Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12481 LG3 17418967 17421480 PREDICTED: receptor-like protein kinase HERK 1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of unidimensional cell growth, response to brassinosteroid, brassinosteroid mediated signaling pathway, regulation of unidimensional cell growth, regulation of unidimensional cell growth, pollen tube reception, pollen tube guidance, protein autophosphorylation, brassinosteroid mediated signaling pathway, pollen tube guidance, unidimensional cell growth, pollen tube guidance, unidimensional cell growth, unidimensional cell growth, regulation of unidimensional cell growth, brassinosteroid mediated signaling pathway, pollen tube reception, post-embryonic development, response to brassinosteroid, pollen tube guidance, pollen tube guidance, protein autophosphorylation, regulation of unidimensional cell growth, protein autophosphorylation, brassinosteroid mediated signaling pathway
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane, plasma membrane, plasma membrane, filiform apparatus, extracellular region, plasma membrane, plasmodesma
Molecular Function   enables   protein kinase activity, transmembrane receptor protein tyrosine kinase activity, protein binding, protein kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein binding, protein kinase activity, protein kinase activity, kinase activity, protein kinase activity, protein binding, protein binding, protein kinase activity, transmembrane receptor protein tyrosine kinase activity, protein binding
SNP Position Effect Amino acid change
T/C 17419144 synonymous_variant p.Gln779Gln
A/G 17419288 synonymous_variant p.Ala731Ala
T/A 17419306 synonymous_variant p.Ile725Ile
T/A 17419467 missense_variant p.Arg672Trp
G/A 17419844 missense_variant p.Ser546Leu
A/T 17419847 missense_variant p.Leu545Gln
G/T 17420010 missense_variant p.Leu491Met
T/C 17420088 missense_variant p.Met465Val
G/A 17420269 synonymous_variant p.Ser404Ser
T/G 17420379 missense_variant p.Thr368Pro
G/A 17420563 synonymous_variant p.Phe306Phe
C/G 17420617 synonymous_variant p.Val288Val
C/G 17420823 missense_variant p.Val220Leu
T/C 17421039 missense_variant p.Lys148Glu
A/T 17421044 missense_variant p.Val146Asp
A/T 17421046 synonymous_variant p.Pro145Pro
A/T 17421059 missense_variant p.Val141Glu
A/C 17421313 missense_variant p.Asn56Lys
C/T 17421423 missense_variant p.Val20Ile
C/A 17421446 missense_variant p.Cys12Phe
A/G 17421455 missense_variant p.Leu9Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12481.1
MRDCREIWLFFCGLTILPLVCFSANFVPLDNYLIDCGASTDTVIDNRNFTADSFYNNFLSTQQDVLASTSLKSIASSSDSPLYATARIFTAPSKYTFPIKKRGRHWIRLYFFPFAYEKYDLSAANFAVSTQDYNLVSDFSVQKNPVMKEYSLDVNSDTLVITFAPSANSIAFVNAIEVVSVPDGLIVDNGFSLYPSGSYSGLLTKALETVFRVNMGGPSVSSGNDTLQRTWVADEKFLIQPNLATNFSNIGAVKYVNGGPTANTAPPSVYGTLTRMNSAGDPRSNFNVTWQFDVEPQFQYLVRLHFCDILSKSLNELYFNVYINSLLAAKDLDLSTENDNVLATPLCKDLVTAPSASTKMLVSIGPSTVNNNYPNAILNGLEIMKMNNSASSFSSSTAPGTGSSGSGSKKVGLIVGVSLGAFFAVVMVLVFFLLCRKRRRLEKEKQGHSKTWVPVSINDGTSHTMGSKYSTGTSGSAASNFGYRFPFVTVLEATNNFDESWVIGIGGFGKVYKGELNDGTKVAVKRGNPRSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEKNEMILIYEYMEKGTLKSHLYGSGLPSLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDDNLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWTMKWQKRGQLEQIIDPTLAGKIRPDSLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQEAVVQGDPEENSTNMIGELSPQLNNFDHEVSVSAAQFEASSLDDLSGVSMSRVFSQLVKSEGR*


CDS Sequence:
>Vu_12481.1
ATGCGGGATTGCAGAGAAATTTGGTTATTTTTCTGTGGTTTAACAATCTTGCCCTTGGTATGTTTTTCTGCCAACTTTGTTCCTCTGGATAATTACCTTATAGACTGTGGAGCATCAACCGATACTGTTATAGATAACCGCAATTTCACAGCCGATAGTTTCTACAATAATTTCCTTTCCACCCAACAAGATGTTCTTGCAAGCACCTCCTTAAAATCAATAGCTTCCTCCAGTGATTCGCCTCTTTACGCAACCGCAAGAATTTTCACTGCACCCTCAAAGTACACGTTTCCGATTAAGAAAAGGGGGAGACATTGGATCCGGCTTTATTTCTTTCCATTTGCATATGAGAAGTACGATTTGAGTGCAGCAAATTTCGCTGTTTCCACCCAGGACTATAATCTTGTGAGTGATTTTAGTGTGCAGAAAAACCCTGTTATGAAGGAGTACTCTTTAGATGTAAACTCAGACACCCTTGTGATCACCTTTGCCCCTTCTGCAAATTCCATTGCTTTTGTGAATGCCATTGAAGTTGTTTCGGTTCCTGATGGCCTCATTGTTGATAATGGTTTCTCCCTATATCCATCAGGGTCCTACTCTGGCTTGTTGACTAAAGCACTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAAGTGTCTCCTCTGGCAATGACACGCTTCAACGAACTTGGGTTGCTGACGAAAAATTCCTCATACAACCTAACTTGGCCACTAATTTTTCAAATATCGGTGCTGTGAAATATGTAAATGGTGGTCCAACAGCAAATACTGCTCCACCTTCTGTCTATGGTACTCTAACAAGGATGAACTCAGCTGGTGATCCCCGAAGTAATTTCAATGTGACTTGGCAGTTTGATGTGGAGCCTCAATTTCAGTACCTTGTTCGACTTCACTTCTGTGACATACTCAGCAAAAGCCTCAATGAGCTCTACTTTAATGTTTACATTAATTCCTTGTTGGCTGCTAAGGATCTTGATCTGAGCACCGAAAATGATAATGTTTTGGCTACTCCATTATGCAAGGACTTGGTTACAGCCCCATCTGCCAGCACCAAAATGCTTGTAAGCATTGGCCCTTCTACTGTGAACAATAATTATCCTAATGCTATTTTGAATGGACTGGAGATAATGAAAATGAACAATTCTGCGAGCAGTTTCAGCTCATCAACTGCGCCTGGGACAGGTTCTTCCGGTTCAGGTTCTAAAAAGGTTGGCTTGATAGTAGGTGTGAGTCTCGGGGCATTTTTTGCAGTGGTTATGGTTCTTGTTTTCTTTCTACTATGCAGGAAAAGGAGACGTTTGGAAAAAGAAAAACAAGGGCATTCAAAGACATGGGTTCCCGTATCAATCAATGATGGAACTTCCCACACCATGGGAAGTAAATACTCTACTGGCACATCAGGAAGTGCTGCTTCAAATTTTGGGTATCGTTTCCCTTTTGTGACAGTTCTGGAGGCTACAAATAATTTTGATGAGAGTTGGGTTATTGGAATTGGTGGCTTTGGAAAAGTATACAAGGGAGAGTTAAATGACGGTACTAAAGTTGCAGTTAAGAGGGGGAATCCTCGGTCCCAGCAGGGGCTAGCAGAATTCCGAACTGAAATTGAGATGCTGTCACAGTTCCGCCACCGCCATCTGGTATCACTGATTGGATATTGTGATGAAAAGAACGAGATGATTTTGATATATGAATATATGGAAAAGGGAACTCTCAAAAGTCATTTGTATGGTTCAGGTCTCCCAAGCTTAAGTTGGAAGGAGAGACTTGAGATTTGCATTGGAGCAGCTAGAGGACTGCATTACCTTCACACAGGATATGCTAAAGCCGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTGCTTGATGACAACCTCATGGCCAAAGTTGCTGATTTTGGGCTATCAAAGACAGGGCCTGAAATTGATCAGACACATGTGAGCACCGCTGTGAAAGGGAGTTTTGGGTACCTTGATCCTGAGTATTTCAGGAGGCAACAACTTACAGAAAAGTCAGACGTGTATTCATTTGGGGTGGTTCTGTTTGAGGTTCTTTGCGCTAGACCTGTTATAGATCCAACCCTTCCTAGAGAAATGGTGAACTTGGCAGAATGGACTATGAAATGGCAGAAAAGAGGGCAATTGGAGCAGATAATAGATCCAACGCTTGCTGGGAAAATCAGACCAGATTCTCTTAGGAAGTTTGGAGAAACTGCTGAAAAATGTTTGGCTGACTTTGGTGTTGACAGGCCTTCTATGGGAGATGTGTTGTGGAATTTGGAGTATGCTCTCCAACTCCAAGAGGCTGTTGTTCAAGGTGACCCTGAAGAAAACAGTACTAATATGATCGGTGAACTGTCACCACAGCTCAACAATTTCGACCATGAAGTTAGTGTTTCCGCTGCACAATTTGAAGCTTCAAGTCTGGATGATCTGTCTGGTGTTTCTATGAGTAGGGTATTCTCACAGCTGGTGAAATCTGAAGGGAGGTGA


Promoter Sequence:
>Vu_12481::LG3:17421480-17423480(-)
CAAATTGTACCTTACTTTAAAACAGAAACGAAAACCAGAAACGACCAATAGTTTAGGAACTAAAAACATATTTAACCCTTCATATTATAACCTTCAGAATATAAAAAAAGTGAGAGAAATTTATATCCACGTTTATGCGCGAAAAACCAATCACGAGGCAGAAAAACATCAGTCACTTTTTTGAAACATAGGAAAAGAAGTTGATGTAGTTCACTTTAAAATTTATTAATGCAACACATGACATACAAATAAGTTTCACTCTTAATTAATATATTTTAAAAAAATGGATAAAATTTGATAAGACAGTATATTTTAATTTTAGAAAATTTATTTATTTTCTTATCACACCATTTGGCTTAAAGAAATTTATTTATTGATAATTAATTTTAGTGGAATATTTAGTATGAATTTGCTAACCGATGATAAGATTTTAGAGATGATTCTTTTGTTGAAAGTTTTATATCTACTAAAAATATATATATAAATAGATGTAAATCTTACTTTATAAATCAATTTTATAAAATTGAGTTAAAATTTATTTTTAACACGATATCTTAACAATATTTTTTTAAGTTAAAGACGAGAAAAAACTTAACGAATTTATTATTTAAAATGTGATTTTTTGGAATTGAGAAAAGAATATTTATTTGGAAAATATTTTTATTATTAAATTAAAAGTTTAAAATGTGTAGAAATATAATGAATATGAATAATTATAAAATAAATAGGAAAATACTAATTATAATTATAAAAGGTTTTAAATTATTTCATAATAAAAATATCTAAAAAAGATTTTTGAATTGTGCTTTCTTGAACCGAATAGAAAGAACGTTGAATACGGAGACTTCAATTTGACGATATTTTGACGAGACTTTCCATTTTCTGGCCTTGATTAGACATTTTTTCTCATCAAATTGTCGTGTATGAGATTTCCAGTTTCAATGGGCGGAGTTAAATACAATTCTTCTTTTGTATGTTGCCTTAAGTAAATTCTTTTATTTTCTTACTAAACCTAGTAATGTTACTTTCAAATTACACTAATACATTTATTGCATTATGATAATATAAGCCATTCTGTGGTGTACTTATTTGGTTAGTTGTCGTAGTTAATGATAAGTTGAGTGTGATATTGGATTAGGTGAATATATTAATTTTGAGAGAGAGATAGTGTAAGATTTCTGATATGGTATTATATAAAGGGACACTTTACTTTACCAACTTTTTTCGGTTCATTGATGGACACTGCCAACAAAAGCGAGCCCACAAGTATATGCCAATGGTAATGACAATCACAATGCCATAAACATTAATCTAATTTTCTCTGTTAATCTGCTTGCTAATATCATTACATCACACTGCTATTAACTCTTCTTTTTATTGTTTATATATATATAATGTAAGTTATTACCAACTCAACAGTCTTGATTTATTTATCACTATTATTTTTTTCCCACCATAGACATGGGATTTTGCAACCTCAAAAACCAGGTCATATACCTGAAGCTTGAGCACATTTTGAATTCCAATTTTTTTGTTCAAACCCTTTTGACCCTTTTTCAGTTTTCTCTCTCTCTGGATTTCTTTTTTTGTTTAAAGAAATAAAGTGGTGATCAAAAGAATCTAGGACTATATATATTAATTACAAACGTTGTCATCAGTTTATACCAGCTTGTGCAGAGCTAGATGCGTGTTGAACATGCTTTTAATCTTTTTCTTCCATCTCTTGCATTGAATGTCCTTCGGTGCAGCAAAAGGGTATTCAGATTTGTGCTCTGCTCTATGGTTCTGGGGGAGTTCTGTGGTGTTTGAAGGTATGATAGTGGGTCTTTGTTTTTTGCTGTTCTTTTTTGTGTTTTTAACGCCTGTTGTTCTGTGATAAAGTAGTAGAAATTCATTGCTTTTCTTTTCTTTTCTTGCATGTACCAGTGTTCTTCGTTTGATAAAATCGCAAGGTTGAAAAGAGAGAATTTGAGGGGAAAGGGGAAGATAGTGTTGGAGAC


Gene Sequence:
>Vu_12481(-)
ATGCGGGATTGCAGAGAAATTTGGTTATTTTTCTGTGGTTTAACAATCTTGCCCTTGGTATGTTTTTCTGCCAACTTTGTTCCTCTGGATAATTACCTTATAGACTGTGGAGCATCAACCGATACTGTTATAGATAACCGCAATTTCACAGCCGATAGTTTCTACAATAATTTCCTTTCCACCCAACAAGATGTTCTTGCAAGCACCTCCTTAAAATCAATAGCTTCCTCCAGTGATTCGCCTCTTTACGCAACCGCAAGAATTTTCACTGCACCCTCAAAGTACACGTTTCCGATTAAGAAAAGGGGGAGACATTGGATCCGGCTTTATTTCTTTCCATTTGCATATGAGAAGTACGATTTGAGTGCAGCAAATTTCGCTGTTTCCACCCAGGACTATAATCTTGTGAGTGATTTTAGTGTGCAGAAAAACCCTGTTATGAAGGAGTACTCTTTAGATGTAAACTCAGACACCCTTGTGATCACCTTTGCCCCTTCTGCAAATTCCATTGCTTTTGTGAATGCCATTGAAGTTGTTTCGGTTCCTGATGGCCTCATTGTTGATAATGGTTTCTCCCTATATCCATCAGGGTCCTACTCTGGCTTGTTGACTAAAGCACTGGAGACAGTTTTCAGGGTTAACATGGGTGGTCCAAGTGTCTCCTCTGGCAATGACACGCTTCAACGAACTTGGGTTGCTGACGAAAAATTCCTCATACAACCTAACTTGGCCACTAATTTTTCAAATATCGGTGCTGTGAAATATGTAAATGGTGGTCCAACAGCAAATACTGCTCCACCTTCTGTCTATGGTACTCTAACAAGGATGAACTCAGCTGGTGATCCCCGAAGTAATTTCAATGTGACTTGGCAGTTTGATGTGGAGCCTCAATTTCAGTACCTTGTTCGACTTCACTTCTGTGACATACTCAGCAAAAGCCTCAATGAGCTCTACTTTAATGTTTACATTAATTCCTTGTTGGCTGCTAAGGATCTTGATCTGAGCACCGAAAATGATAATGTTTTGGCTACTCCATTATGCAAGGACTTGGTTACAGCCCCATCTGCCAGCACCAAAATGCTTGTAAGCATTGGCCCTTCTACTGTGAACAATAATTATCCTAATGCTATTTTGAATGGACTGGAGATAATGAAAATGAACAATTCTGCGAGCAGTTTCAGCTCATCAACTGCGCCTGGGACAGGTTCTTCCGGTTCAGGTTCTAAAAAGGTTGGCTTGATAGTAGGTGTGAGTCTCGGGGCATTTTTTGCAGTGGTTATGGTTCTTGTTTTCTTTCTACTATGCAGGAAAAGGAGACGTTTGGAAAAAGAAAAACAAGGGCATTCAAAGACATGGGTTCCCGTATCAATCAATGATGGAACTTCCCACACCATGGGAAGTAAATACTCTACTGGCACATCAGGAAGTGCTGCTTCAAATTTTGGGTATCGTTTCCCTTTTGTGACAGTTCTGGAGGCTACAAATAATTTTGATGAGAGTTGGGTTATTGGAATTGGTGGCTTTGGAAAAGTATACAAGGGAGAGTTAAATGACGGTACTAAAGTTGCAGTTAAGAGGGGGAATCCTCGGTCCCAGCAGGGGCTAGCAGAATTCCGAACTGAAATTGAGATGCTGTCACAGTTCCGCCACCGCCATCTGGTATCACTGATTGGATATTGTGATGAAAAGAACGAGATGATTTTGATATATGAATATATGGAAAAGGGAACTCTCAAAAGTCATTTGTATGGTTCAGGTCTCCCAAGCTTAAGTTGGAAGGAGAGACTTGAGATTTGCATTGGAGCAGCTAGAGGACTGCATTACCTTCACACAGGATATGCTAAAGCCGTTATTCACCGTGATGTGAAGTCTGCAAATATCCTGCTTGATGACAACCTCATGGCCAAAGTTGCTGATTTTGGGCTATCAAAGACAGGGCCTGAAATTGATCAGACACATGTGAGCACCGCTGTGAAAGGGAGTTTTGGGTACCTTGATCCTGAGTATTTCAGGAGGCAACAACTTACAGAAAAGTCAGACGTGTATTCATTTGGGGTGGTTCTGTTTGAGGTTCTTTGCGCTAGACCTGTTATAGATCCAACCCTTCCTAGAGAAATGGTGAACTTGGCAGAATGGACTATGAAATGGCAGAAAAGAGGGCAATTGGAGCAGATAATAGATCCAACGCTTGCTGGGAAAATCAGACCAGATTCTCTTAGGAAGTTTGGAGAAACTGCTGAAAAATGTTTGGCTGACTTTGGTGTTGACAGGCCTTCTATGGGAGATGTGTTGTGGAATTTGGAGTATGCTCTCCAACTCCAAGAGGCTGTTGTTCAAGGTGACCCTGAAGAAAACAGTACTAATATGATCGGTGAACTGTCACCACAGCTCAACAATTTCGACCATGAAGTTAGTGTTTCCGCTGCACAATTTGAAGCTTCAAGTCTGGATGATCTGTCTGGTGTTTCTATGAGTAGGGTATTCTCACAGCTGGTGAAATCTGAAGGGAGGTGA