Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12526 LG3 17809537 17810930 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, photomorphogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, photomorphogenesis, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding
SNP Position Effect Amino acid change
T/A 17809743 intron_variant
T/A 17809782 splice_region_variant&intron_variant
A/G 17809786 splice_acceptor_variant&intron_variant
C/T 17810027 synonymous_variant p.Phe97Phe
C/A 17810184 missense_variant p.Pro150Thr
A/G 17810521 missense_variant p.Gln262Arg
A/G 17810703 downstream_gene_variant
G/A 17810707 downstream_gene_variant
C/A 17810734 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12526.1
MVFSSIPVFVDPPNWHQQPNHPQANGSDNTQLLPPLPPQQTHVGASVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSDKQTLSGSSGALPSGGNTHELIGQLPQPPNLPFMASLQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGSGNSSAGGGMDQWRLQQIPFFNGFESASAGSYHFQNESIETPSGLVGDLATNSRVSQMPSVKMEESGALNLSRSPLNFHYHQLTEINADMVELISSSL*


CDS Sequence:
>Vu_12526.1
ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCACCAGCAACCCAACCATCCTCAGGCCAATGGCAGTGACAACACTCAGCTTCTTCCACCTTTGCCACCGCAGCAGACTCATGTGGGAGCTTCTGTGGGATCAATCAGGCCAGGTTCCATGGCTGATCGAGCTAGGCTGGCTAAGATACCTCCTCCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACTAAATTTTGCTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTCTGCAAGACTTGCCGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGCTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCAGCATCATCTGACAAACAAACACTGTCTGGTTCTTCTGGTGCACTCCCCTCTGGTGGAAACACTCACGAGCTTATAGGCCAGTTGCCGCAACCACCGAACCTTCCCTTCATGGCATCACTCCAGAACCTGAACCGTTATGCTGTCGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGTTTTCAAATTGGTGGCAGCGGTAATTCCTCTGCTGGTGGAGGAATGGATCAGTGGCGTTTGCAGCAGATTCCTTTCTTTAATGGTTTTGAATCTGCTTCAGCTGGTTCCTACCATTTTCAAAATGAAAGTATTGAAACACCTTCTGGTTTGGTTGGAGATTTAGCAACGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCACCACTGAACTTCCACTATCATCAGTTGACAGAAATTAACGCAGACATGGTAGAATTGATATCCTCTTCTTTGTAA


Promoter Sequence:
>Vu_12526::LG3:17807537-17809537(+)
ATTATGTCTTATTATTTTAGTGCTTAAAACAATTCACTTTATTAAACAATTCACTTTATTAAATAATTAATAAAAAATGTTCATTGCACATAATCTACTTTGGTAATGAAAAATTTGTATAATATGTATGCAGTTCTAGTTTGTATGGTCAGTGAGAACTATTATAATTATTTTAAGAGCATGAATCTATTTTTGCACAGTGGTGGATGGAAAATTGTACAAGAAAGTGGAACAAATCTTGGTCATTTGAAACAATATAGAAAAGCAGAAGAACAGTGATGTAACTGTGTATGCTAAGTTATCCTAAAAGAGCATGAGTGCATGATGAAGGTTAGAAGAAAATTTCTTATCGATGAAGAAACGACATTGATATATAGATATCCCATAATCATGTCATGGTTGCATTTCATTCCCTACTAATGTGAGTGCGACTGAGGCCCACTTACAAAAAGAATATGTTGTTTTTCACTCTACCAAATTTGGGGTCTCTGCACCCAAAAAAAAGCAAAAAATAGACAAAAGAAGCACGTTAATTAATCGACACCCTCAAATCTCAACTATTAATTATTGAACCATTAAAGCTAAGAGGCAACTAGAAGATTTTGTCTTGCGACTTAAAAAGATTTTCATGGATAAAAAAGTTGGATAAACACAGCATTTCATGTATACTCAACTCATAATGTTGGTGCTGTGCCCAAAAAGGATCTGACCACAACTTTAAGCCTTCAATTTACTCTATGGTGCTCAGCTTATCAAAAAGTAAAGCAATTAAAGAATACCACCAAATCAATTATATACATATATATATATATAACTAATGCATTATATATGACAATTTTGCAAACTTTCTTTCCCCTTTCGTGCTTTCTTTCTGAATTACTTGTCTCATCTTTTCTTTAATTACTCCACTTGCCGCATCCTTTGCAAATTCGCATTCCAAAAAATCTGACATATTAGTGGCTCACTCAATGCTGTGTTTCATTAGCAGACGCAAGATCATGGGACTGAAAACTGATATATATCTAAACGCAATGCATTTTTCTTTGACTGCTACTGTTTCTAAAATTATCCTTTAACTAAAAATTAATCTTTCGTAATATCTTAAGTACATGCATGCATGCTAAATTTGTTCAAACTTATCACTTCGATTATCTAGGCAAAGATTACTAGTTTTATGTAATCTGGGTCTTGTTAAAGAATTCATTTTCAGGAAGTTAGAAACTGTCAAATAGTTCATTTTGTGGAATTAACATTTTGCATGTCAGTCTCTTAAACGAGTGAACGAATTCTTTCCATTTTTTTTTTCTCATCTGGTACTTCCCAGTCATCGATAATTGTTGGGAAGAGATGCACTTTTTCTGATTGTTTTTAAGTCGCCTTTACAGTGCAGGGATGGTTTAATAACTTAACTTTATTGTTTATTTCTGAATACTTGGTTTTTTTTTTATGATGAAGCTATAGAAAGCTTTGGATCTTCAATCAGTTAATTAGGGTTTTTAAGTATATAAGCATGATGATAGAATAAGATTTAGTGGAAGGTTGTAGTCTAATTATGGTAATTATTTGAGGGTTAAGTTAATTAATAGAGGTTTGGAATTGATTATGTAAGCGGATTCCACCATGAGGCAGGAATAGACAGTGATTAGCAATATGAAAACTTTATTTTTAAAATTTGGGTTCCATGCATGGGAGCCACTATGCCCTTTTGATGAAGAAATTTACAGAGGAAGCCATTAAAAAAAGAAGCTTATAGGTTAAGAAACATCGTCCACTGAAAACCCTAAAAATAAATAAAACAAAAAGAGATGAGAATGAGGGAATAAGCGCAAAGTAAAGAAATTAAAGCCTCTTCCTGCTTTCTTTCCTCCACCCTCTTCCTCTTTAATGCTCTTTTTCCCTTTCTTTCTCCTCTCTGGTATTCCCTTGGTGTGATTCTCCACCATCTCCCTAAAGAGCCATCAAACTTTATAAAAGAAAAACATAAAAGCATTTGAACACCA


Gene Sequence:
>Vu_12526(+)
ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCACCAGGTAAGGTTTTCCTCAATTTTCAGCCACAGCTTCTCATCCCTAAAAAGAAACTAAAAAAATAATAATAATTGCAAAAGATATAATTATTCCTATTCCCTGTAATATCTCCCTGAATATACCAGATTTTGTTTTCATCATACTAATTTCTCTCCTCCTTCTTTTTAATTCCTTTTGTTCTTGATCTGTTGTTGTTGTTGCAGCAACCCAACCATCCTCAGGCCAATGGCAGTGACAACACTCAGCTTCTTCCACCTTTGCCACCGCAGCAGACTCATGTGGGAGCTTCTGTGGGATCAATCAGGCCAGGTTCCATGGCTGATCGAGCTAGGCTGGCTAAGATACCTCCTCCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACTAAATTTTGCTATTTCAACAACTATAGCCTCTCTCAGCCACGCCACTTCTGCAAGACTTGCCGGCGTTATTGGACAAGAGGGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGCTGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAGTCTCCAGCATCATCTGACAAACAAACACTGTCTGGTTCTTCTGGTGCACTCCCCTCTGGTGGAAACACTCACGAGCTTATAGGCCAGTTGCCGCAACCACCGAACCTTCCCTTCATGGCATCACTCCAGAACCTGAACCGTTATGCTGTCGGAAACATGGGTCTCGGGTTGCGTGAGATTCACGGACAGAACGATCACATGGGTTTTCAAATTGGTGGCAGCGGTAATTCCTCTGCTGGTGGAGGAATGGATCAGTGGCGTTTGCAGCAGATTCCTTTCTTTAATGGTTTTGAATCTGCTTCAGCTGGTTCCTACCATTTTCAAAATGAAAGTATTGAAACACCTTCTGGTTTGGTTGGAGATTTAGCAACGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAGTGGAGCTTTGAATTTGTCAAGATCACCACTGAACGTCTCAGAAAATAACCACTACTATTCATGGACTGATATGTCAGGTCTTTCCTCTTCTTCTGCTACTCATCTCTTGTAACTTTGACCATATCAGCATATACATATATATATATATATATATATATGTATTCACATATATATGGTCAATAACCCCATCATCCCAACTGAACTTCTTTGCTTGAATTGTTAACTACTTCGAAACGATCTCACACCATGGATCAAAGAAATTCTCAAACGAGATTTGGATGTTCCACCGAACACCTTGCCTTGACTTCATTCCAAGTTCCACTATCATCAGTTGACAGAAATTAACGCAGACATGGTAGAATTGATATCCTCTTCTTTGTAA