Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12534 LG3 17894176 17896139 "PREDICTED: protein kinase APK1A, chloroplastic-like isoform X2 "
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   meiotic cell cycle process, protein phosphorylation, negative regulation of metabolic process, protein phosphorylation, protein phosphorylation, protein phosphorylation, response to inorganic substance, meiotic cell cycle process, meiotic cell cycle process, negative regulation of seed germination, negative regulation of seed germination, protein phosphorylation, response to blue light, protein phosphorylation
Cellular Component   located in   mitochondrion, mitochondrion
Molecular Function   enables   protein serine/threonine kinase activity, protein kinase activity, ATP binding, protein serine/threonine kinase activity, ATP binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein kinase activity, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
A/T 17894327 missense_variant p.Glu51Val
C/T 17894335 missense_variant p.His54Tyr
T/A 17894461 missense_variant p.Ser96Thr
T/C 17896137 missense_variant&splice_region_variant p.Leu410Ser
G/T 17896138 missense_variant&splice_region_variant p.Leu410Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12534.1
MYIISGLNSKNVSAYAKDFSSPSSKVIKELSSTISKVSEVSVPQTLQSEGEILHPSNLKSFSLTELTAATRNFRKDSVLGEGGLGSVFKGWIDDHSLSATKPGTGIVVAVKRLSQDSFQCHEEWLARQGMTQEESLKVPYLIHVSLLNKTQAFNMNRDRLLVYEFMPRGSLENHLFMRGSYFQPLSWGLRLKVALGAAKGLAFLHSAETKVIYKDFKTSNVLLDSHYNAKLADLGLSMEAPTRDKSRVSSRIMGTYGYAAPEYLATGHVSAKSDVFSFGVVLLELLSGRRAVDKNRPSGQHNLVEWAKPYMANKRKLLRVLDNRLEGQYDIDEAFKVATLCLRCLATESKLRPNMDEVVTDLEHLQVPHVHHNRSVNTSRSRRKSADDLTNGRSAKASLSPLSHDIANTRP*


CDS Sequence:
>Vu_12534.1
ATGTATATAATCTCAGGGTTAAACTCAAAGAATGTGAGTGCCTATGCCAAAGATTTCAGCAGTCCAAGTAGTAAAGTTATAAAAGAACTCAGTAGCACAATTAGTAAGGTCTCAGAGGTTTCTGTGCCTCAGACTCTTCAGAGTGAGGGTGAGATCTTGCATCCATCCAATCTAAAGAGCTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGTAAGGACAGTGTATTAGGAGAGGGTGGTTTGGGATCGGTTTTTAAGGGTTGGATTGATGATCACTCACTTTCTGCAACCAAACCTGGCACTGGGATTGTTGTTGCTGTGAAAAGACTTAGCCAAGACAGTTTCCAATGTCACGAGGAGTGGTTGGCAAGGCAGGGTATGACTCAGGAAGAAAGTCTCAAGGTGCCTTATCTTATCCATGTTTCTCTTCTAAACAAAACTCAAGCTTTTAACATGAATAGAGACCGTCTTCTGGTATATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTGCGTTTGAAAGTCGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATAAAGATTTCAAGACCTCAAATGTCTTGCTGGATTCACATTACAATGCAAAGCTTGCTGATTTGGGGCTCTCGATGGAAGCACCTACACGTGACAAAAGTCGTGTCTCCAGTAGAATAATGGGAACCTATGGATATGCAGCTCCAGAATATCTAGCCACAGGTCATGTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTTCTGCTAGAACTGTTATCTGGTAGGAGGGCTGTGGACAAGAACAGACCATCAGGGCAGCACAATTTGGTGGAATGGGCAAAGCCATACATGGCAAACAAGAGAAAGCTTCTGCGTGTGTTGGACAACCGTCTTGAAGGTCAATATGACATAGATGAAGCTTTTAAGGTAGCTACCCTCTGTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAAACATGGACGAAGTTGTCACAGATTTGGAGCACCTGCAGGTTCCGCATGTGCATCATAATCGTTCTGTGAATACCTCTCGTAGTCGTAGGAAAAGTGCTGATGATTTAACTAATGGTAGAAGCGCTAAAGCTTCACTTTCGCCTCTCTCACATGACATTGCAAATACACGTCCTTGA


Promoter Sequence:
>Vu_12534::LG3:17892176-17894176(+)
TTGTCAATTACCATAGTATTGTTCGTTAGTCTTGTTTGTCACAATTTTATCTTCAAAAAACATATCGGAGGATGAAAAGTGAAAAGATATATAAAGCGTCTTAAACTTTGATTTTTAAGCATTATGAAAATATTATATGTAGTAGAAACAATAGCAAAATCTAATGACTTTAAAATTTTTAAAAAATATTCAGTTATTTTAAAAAAATATAATTTTGATATACTTAGAAGAAGTAGTACAACCATAATTTTTTGGATTTATATGAAGTAGTACAATCACAACTTATTATAATAGTGGTTAAAATTATGTGTAATTGATTATTAAAATAATCCAAAATAAAATTTTGACGTTTGGAACAGAGAAAATATAGAAAATGGCACGAGGGTATTATAAAATTAGGATATTCCGATATGGGACATGGATAATGAGAAGTGAGCGTGTTGAGCATCACTTGCGTGAAGTGTGGTTAACATTAAATCAGCAAGTGGAAAAAGCTGAAGGGGTCCATTTCTGTTCAACAACATGCAATGCTACAAAACAATGAAGGCTTCTTCCAACTTGATGTAAGACCCTACCCTCTTCAAATCATTCATACCCACAAACAGAACAAAAGCCAAACCATGAAACATTCTATCTCCTTATCTTATATATCATAAACAAATGCCAACCCAACAAAATAATAATCCAACTCATTCACAATTACTTTTTCTGTGGTTTCTGCACAAAGTGAAATAACTAACCAAGATTCTACCCTTATGCAGCATATTTTTGTAAAATCATATTGCTTATGGAGTATTTTTTTTCATTGTTTTATTTAATAAACTAAGTATGGTTTATAAACTACAAGTTAATGAATTAGTACAGATTTTTTATTTTCTCATTTTAGTGGATAATTCTAGAACATTGCTAGCAGATTCATGCACTGATGTGACATTCTTTTGTCCACAAAAGGATTTCGTAAAATTAAGTTAAACTGTTATATTCGATCATAATTTTCTATATACTGAAACAAATCATTTGTCATTCACTGATAATACAGAAGAATAAACAATCATTAAATAGTAGGAAAATATCTAAACATTAATTTTTGAAATTAAGTTTAACTGTAAGTTCAAAAAATCTGGACCAAAAGGAGTCCCTTACATTACATCAGGCCATGCAATGCTACTTGAATGGCCATACCCACCTTCCTTCGTCACTTCAATATCTCTATCTCTTTGTCTTTACTAATCCATCCAAGCTTTTATCTGAAACTTTGGTCAACTTGCTCTTTAACTTCTGAATGGTCTTTCTGTTCTCTCTCTAGGGACCACACACAAGTTAACACTAAATTAAGGTTTAACATGTCAGCAAACTCGTGTCTCTCGCTTCCTGCATCCCCTGTAAAGGCTAGCTGTATGTACTTCCTTCTATTCTCCTTCTTTCTGTAACCTCTGATTCAGCTTTACTTTGAAAACAGGTTTGCTTGGAATTTTTGTTTTCTTCTTCTTTCCATTTAATTTTTTCTTTTTCTCCTTCTTTACAATTCATGATCATGGTTTTTGCTGAACCTGATCTGAATGAACTTACTTTGTTGTGATCTACAGGAAACAAGGCTCAAGGAATTAGTATTCCTTCTATCATGGGAGTTTGTTTGAGCACCAAAACTAAAACTGGTATATATTCAGATTTTTTTTCTTCACCTTTGTTTTAGCACCGTACTAGCTACATGCTTATGAAAAAAAGTTTAGATCCATGTGCTTCTTCTGTGTTGATTGGTTTTGGTGTTCTCCACTTTTATCTCACTCAACTTCATCTCCTCCTCACCCCATGTGGTTTTAGAAGACTACATGGGAAATTTTAATAGACCAAAGTTGTTTTTAACTAAGACTAAGCCTGGCTTCCTTGCTATAGCTCTTGTTTAATGAGTTTGGTTTGCCTAACTAACATCCAATTTTTTCAGCTGAATGAATGTGATATATGCCATGTAGTTTATGAAAGTTGAACTTTGATTATATAGA


Gene Sequence:
>Vu_12534(+)
ATGTATATAATCTCAGGGTTAAACTCAAAGAATGTGAGTGCCTATGCCAAAGATTTCAGCAGTCCAAGTAGTAAAGTTATAAAAGAACTCAGTAGCACAATTAGTAAGGTCTCAGAGGTTTCTGTGCCTCAGACTCTTCAGAGTGAGGGTGAGATCTTGCATCCATCCAATCTAAAGAGCTTTAGTTTGACAGAACTTACAGCTGCCACAAGAAATTTCCGTAAGGACAGTGTATTAGGAGAGGGTGGTTTGGGATCGGTTTTTAAGGGTTGGATTGATGATCACTCACTTTCTGCAACCAAACCTGGCACTGGGATTGTTGTTGCTGTGAAAAGACTTAGCCAAGACAGTTTCCAATGTCACGAGGAGTGGTTGGTGAGTTTAATCTATTTCTTTAAACTTCAAACACTTTGATGTGGTTTACTTCTGCTAACTAAGAAGAAAACACTCACTCTGTTAAATGCTAAACTATGAATTCATCTTTCAGAATATTTTTCCTTTGTAGGCAAGGCAGGGTATGACTCAGGAAGAAAGTCTCAAGGTGCCTTATCTTATCCATGTTTCTCTTCTAAACAAAACTCAAGCTTTTAACATGAGTACATACTGAACGTGTAGTGATTTGTATGGTGTAAATAATGAGCATATAATATATGTATTCATGCAGTGTAAAAGTTGTTTGTACTGACATTCAATTACAACTTTTCTCATGCACGATGAGTTTATGATTTCTGATTTATTGATTATATAAAAACATATATACTCACACTGCAAGCCTTTTGAATAACATTGTTATGAAAAGTTGGAAAATGAGGATTAAGTGCTACCCTTACACGGGTTTGCCTTACAGTGTTTAAATTTGTTGTGTTAGGATGAAGTAAACTGTCTAGGGCAGCTTTCTCATCCTCATCTAGTGAAATTAATTGGATATTGCTTTGAAGATAGAGACCGTCTTCTGGTATATGAATTTATGCCTCGTGGTAGCTTGGAGAATCACTTGTTCATGAGTGAGTTCTTCATGTCCTATCTTTTCAAATCGTTGACCTTGTGAAATGTGCCTAAAATCAGCCACATTGTTGCAACAGGAGGCTCATATTTTCAACCTCTTTCTTGGGGCCTGCGTTTGAAAGTCGCTCTTGGTGCTGCCAAAGGGCTTGCATTTCTTCACAGTGCTGAAACAAAAGTGATATATAAAGATTTCAAGACCTCAAATGTCTTGCTGGATTCAGTACGTGCCCTTTACAGACATATGGCTATCAGGTTTCAAACATAGAGGAAGTTATTTAGATACCATATCTGAAGATTCCCTTGCTCATTTGTTTCAGCATTACAATGCAAAGCTTGCTGATTTGGGGCTCTCGATGGAAGCACCTACACGTGACAAAAGTCGTGTCTCCAGTAGAATAATGGGAACCTATGGATATGCAGCTCCAGAATATCTAGCCACAGGTATTGTGCGTTTAAACAAATATTTATATACTCTTCAAAATTGGCACTTCTAAAGTTATTTCAAATATGATTTTGGTGAAGGTCATGTGAGTGCTAAGAGTGATGTCTTCAGTTTTGGAGTTGTTCTGCTAGAACTGTTATCTGGTAGGAGGGCTGTGGACAAGAACAGACCATCAGGGCAGCACAATTTGGTGGAATGGGCAAAGCCATACATGGCAAACAAGAGAAAGCTTCTGCGTGTGTTGGACAACCGTCTTGAAGGTCAATATGACATAGATGAAGCTTTTAAGGTAGCTACCCTCTGTCTGCGATGCCTTGCAACAGAATCCAAGTTGAGACCAAACATGGACGAAGTTGTCACAGATTTGGAGCACCTGCAGGTTCCGCATGTGCATCATAATCGTTCTGTGAATACCTCTCGTAGTCGTAGGAAAAGTGCTGATGATTTAACTAATGGTAGAAGCGCTAAAGCTTCACTTTCGCCTCTCTCACATGACATTGCAAATACACGTCCTTGA