Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12543 LG3 17961908 17965246 PREDICTED: scarecrow-like protein 14
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, response to photooxidative stress, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to xenobiotic stimulus, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   cytosol, nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 17961972 5_prime_UTR_variant
A/T 17961978 5_prime_UTR_variant
C/A 17962284 upstream_gene_variant
C/A 17962615 synonymous_variant p.Val31Val
A/C 17962659 missense_variant p.Asp46Ala
G/A 17962691 missense_variant p.Val57Ile
T/A 17962754 missense_variant p.Ser78Thr
C/T 17963499 missense_variant p.Pro326Leu
A/G 17963500 synonymous_variant p.Pro326Pro
G/C 17963509 missense_variant p.Leu329Phe
G/T 17963633 missense_variant p.Val371Leu
C/A 17963646 missense_variant p.Thr375Lys
T/A 17963660 missense_variant p.Cys380Ser
G/A 17963681 missense_variant p.Asp387Asn
G/A 17963696 missense_variant p.Ala392Thr
C/A 17963708 missense_variant p.Leu396Met
G/A 17963737 synonymous_variant p.Pro405Pro
G/A 17963774 missense_variant p.Ala418Thr
G/A 17964038 missense_variant p.Gly506Arg
C/T 17964056 missense_variant p.Arg512Trp
G/A 17964119 missense_variant p.Gly533Arg
T/C 17964163 synonymous_variant p.Phe547Phe
G/T 17964191 stop_gained p.Glu557*
C/G 17964211 missense_variant p.Asp563Glu
T/C 17964812 3_prime_UTR_variant
A/T 17964833 3_prime_UTR_variant
C/A 17964886 3_prime_UTR_variant
A/G 17965039 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12543.1
MDPRFESNFINGFKPNNQVSNTVVVEDQFLVPVNGMMRPFEFGFGDNSLILPPDPNVAQNHVSFATDEECPLDEIDFSATVLRYINQMLMEEDLEAKSCMFHDSLALQAAEKSFYEAIGETHPSLVKTHHNVDSPEDSSFSDYGSSGTTTSNGNSIESHWGNVDLTDYKPSILQTTFPTDFVFQATSIQSSMNTTSNFSVTDSGFLHSSTAAGILDPTLFSKSESVLQFERGVEEANKFLPKGNPLVVDLEKPSLRMVPHIQEEIKVERDEIFAELRGRKNHGREDEEADSQDGRSNKQSAVYIDDSEISELLDKVLLGTGCRKEPAPLCICYADLPNGASSSAQKKLEETNKSGGGKSRVKKQGNTKGVVDLRTLLILCAQAVSSDDRVSANELLKQIRQHTSPLGEGTQRLAHCFANALEARLAGTGTQIYTALSYKRNSAADMVKAYQMYISACPFKKLSIIFANHTILQLAMEVESLHIIDFGIRYGFQWPALIYRLSKRLGGPPKLRITGIELPQPGFRPAERVQQTGRRLARYCDRFKVPFEFNAIAQKWETIRVEDLKIKENELLAVNTMFRFQNLLDETVVLNSPRDAVLSLIRKANPTIFIHGTVNGSYNAPFFVTRFREALFHYSTLFDVLDTNVSREDPMRLMFEKEFFGRRVMNALACEGCERVERPETYKQWQVRNMRAGFRQLPLDKHLINKLRSKLKDIYHSDFMLLEDANFMLQGWKGRVVYASSCWVPA*


CDS Sequence:
>Vu_12543.1
ATGGATCCACGTTTCGAGTCCAATTTCATCAACGGTTTTAAACCTAACAACCAAGTGTCCAACACGGTTGTTGTAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGACCCTTTGAGTTTGGATTCGGGGATAACTCGTTAATTCTTCCACCTGATCCAAACGTTGCTCAGAACCATGTTTCCTTTGCCACCGACGAGGAGTGTCCACTGGACGAGATTGATTTTTCTGCTACTGTCTTACGTTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGTCGTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCGTTCTATGAGGCCATTGGTGAGACACACCCTTCTTTAGTAAAAACCCATCACAACGTAGACAGCCCTGAGGACAGTAGTTTCAGTGATTATGGCAGCAGTGGTACAACCACTAGTAATGGTAACTCGATTGAGTCTCATTGGGGTAACGTTGATCTTACTGACTATAAGCCTTCTATACTGCAAACCACTTTTCCCACTGACTTTGTTTTCCAGGCCACTTCAATCCAATCTTCTATGAACACCACAAGCAACTTCAGTGTTACCGATAGTGGATTCTTGCATAGTTCTACTGCGGCTGGAATTTTGGATCCAACCTTGTTTAGCAAGAGTGAATCTGTTCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAACAAGTTCCTACCTAAAGGGAATCCTTTGGTTGTTGACTTGGAGAAACCCTCTTTGAGGATGGTTCCACATATCCAAGAGGAAATTAAGGTAGAGAGAGATGAAATTTTTGCTGAGTTAAGAGGAAGGAAGAATCACGGGCGGGAAGATGAAGAAGCAGATTCGCAAGATGGGAGAAGCAACAAGCAGTCTGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTTCTGCTGGGCACTGGATGCAGAAAGGAGCCAGCTCCTTTGTGTATTTGTTACGCAGACCTTCCTAATGGAGCATCCTCGAGTGCACAGAAGAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAGCAAGGCAACACAAAAGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGTGTCTGCTAATGAATTGCTGAAGCAGATAAGGCAACATACTTCTCCGCTGGGTGAGGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCTCTTGAAGCACGTTTGGCTGGGACAGGCACTCAGATTTATACTGCTTTATCATACAAAAGAAACTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCGGCTTGTCCATTCAAGAAGCTATCTATCATTTTTGCAAACCATACAATTTTGCAGCTAGCCATGGAAGTTGAATCTCTTCATATTATAGACTTTGGCATCCGTTATGGCTTCCAATGGCCAGCTCTTATTTATCGTCTATCAAAACGACTTGGGGGACCTCCCAAGCTGCGGATAACAGGGATAGAACTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGACGTCGCCTTGCAAGATACTGTGATCGGTTTAAAGTTCCATTTGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAGAGTTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATACTATGTTTAGATTTCAGAATCTACTTGATGAGACAGTTGTGTTGAATAGTCCCCGGGATGCTGTTTTAAGTTTAATAAGGAAGGCAAATCCCACTATCTTTATACATGGTACTGTCAATGGGAGCTACAATGCTCCATTCTTTGTAACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACTAATGTGAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGTCGGAGGGTAATGAATGCTTTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGACCCGAGACATACAAGCAATGGCAGGTTAGGAACATGAGAGCTGGATTTAGGCAACTGCCCTTGGATAAACATCTCATCAACAAATTAAGATCCAAGTTGAAAGATATTTACCATAGTGATTTCATGCTTCTTGAAGATGCCAACTTTATGCTGCAAGGTTGGAAGGGCAGAGTAGTTTATGCTTCATCTTGTTGGGTGCCTGCATAG


Promoter Sequence:
>Vu_12543::LG3:17959908-17961908(+)
CATATTTTTTTTTACTAATATTTACTTTAAAGTAAGATATAAAGCTCCCAGGTGTCGACCAAATCATAGTATTTTATTAGTGAGCATTGGTTACATACATGCATCTCTCGTTAGTTATAAACCTTTTTGAAAGTTGAATTTTCTCGGTCTTTTGTCTTCTTTAGATTCTAATTCCAATGTTAAATTCGACCAAATCATTTTCTAACCTCAGAAATAAAAACACTATCTTTTTCACTCTATTACCACCAACCTTGTTTCGACAAGTGCAAGAAAACCACGAATTTTAATTAATCATTAATACTGTGTTCGCATAAACAGATTTAATTGTTCATACGGATTTGCGAGTGAAGAAATTCATTGAGAGCAGTGTTCGTTTTCGGTGATTTGTGAGGGGAAAAATGTGCATATTTGTGGGAGAGGGGTTTTTCTATTACTCGCATAATTGAAAAGATTTGCGGCGAATTAATGGGAAAAGCTTTTTTTGCCCTTAAAACATTTCATAATACCATGCTCCATCCCATGACCCATGATGCTGGAGAATGCAGCTCCATCCCATGCTCCTTCAAGTAATCGACGAAGGTGAAGAACGACATGAAGCAACAGGAAGTGATGGGCGGACGTTGAAGAAGATGAGGGAGGCGTGAGGAAGATGGCGGCTCTGGAGCGACGGCGGCGTCCGATTAAAGGGCGAGAGAGTAACGGTGCACGAGGGTTTGGCGACAAGCGCCGCAGCGGCGACGACGACGACGACGGAGGTGACTTTGCAGTAACCCGCATCCTTAAAGGCGATTGGTCGAGCGGTGGCGTTTTGCAGGTTCTGCGGTGGCGGCGGCGGCGTCCATGACCGGTGATGGTCGACAAATATGACAATAGTGGGGAACGAGCAAGCCGGTGACACGATAGTGACTCGATACTGTTTCAGTTGTGGGAATGACTTTGAAGGTTTGGAGCAGAATGAAGCTTTAGGAGAGAGGCTATTTCAACCTTGGGTTTCAGCGGAAGAAGTTGGCTTTTGCTTGCAGGTTTGCGAAGAAATGGTGAAAGATGAAAGCGTGATGGTTGTTGATGGCTCGAAGATGAGTTCTCGGTGGTCCTTCGTGGAGGTGCTACATGTGGCTATCAAGGTTACGATGGCTGGGTTAAGGTTTGGAAACCAAAAAGAAATTGGAGAATTGGGAGGATGAATCGAAAGCTTTGATAGATGATAGAAACTGATTTCTTTCTTGAATTTCCTTTTGTAGAATGATACTTGAAAGCTAACGGTGCCTGCAGTGTGGTTTATGAAAAATGATACTGAATAATTGGTATAACATTAAATATTAAAATTAATTTTAATTTTTTACTCTTTATAAACTATTTTACAATTAAATATAACATTAACAATTATCATTTTATATTACTTTAATAACTAGAGACATTTTTGTAATCTTTAATTTCTACCAATTAAACAATTTTTTTTATCTATCACATCAATCTAATCCTACACTAATTCTCATAAACTTTACTTATAAACTTTATTTCTAAATCTATTCTCATTTACCTCTAAATTCACTCAGACAAACAATAAAAAATTTATCCTCAAATCCCCTCAAATTCATTCAATCACTCTCAACCAAAATATCTCTCCAAACACCCTGAAACGAAGAAAACCTAATTGATATAGTTTTCAAACGTTGGAACCATTACTATTATTTATTTTCTTTTATGAAATTTCATATTTATAATATTAAAGTTCTCAAAATTTCATTTCTCATAAAAAAAAATAGTACGGAAGCTACATAATAAAAATGATGTGAGGTGACACCAGTTGACATTAGAAATAATTTTTTATTTTGATAAAGATTGTAATTATCTTCTGTGAATAAGTGCATTATTAATTAATGATGACTGCTGAGTGAAGTTAGTGCACTTTAGACATATTTCACAACAATAATCACTTGAAGACAATGTTAAGAATAATTTAAGACCAGATTTAAGATGGTATACAGCACCCACCTTAG


Gene Sequence:
>Vu_12543(+)
GCCACCAAACATTTGCATTTGTATCTGTCACAAAAAAGTTTCAGAGGCCAATCTCTAACATTTGGCACACAAAGGAAGTTTGGTTTTGTTTTGAGTTTCAACATTCTATGATCTGTCTCAATTTGACCTCATGATTCATGTCTTCTCCACCAAAGCCCCAAACAAAAGAAAATCTCAATTCTCCATCTCAGGTTCCTTCTCCCTCTCTTCTACTATTCTATTTATTTCTTTTCTTTCTTGCCTGCTTCATTATAAATCAGTCAATCATCTTACTTTATTTCTTCTGTCCATCGGCTATGCAAAGCAACCTCGCTGATTTTGCTTCCGTGCACATAAATTGCCTCAAAATCTTACTATCCTAGGGTTACCAATGTTCCCTCAAGATTCTTCTTTTAATACATGCATCAAGTTACAACTTTTGATTGCTTTAACATATATAAATCCCTGCTTTTAGCTTTTTCCATACATGTGTTACTACCTCTGTCTCTTCCACTTTCATGGCTTTTTAGAAAGCCATGCTAACGGTTCTGGATTCATGGTGGGAAACAAACTGATTTTTTTTTTCTCACTTTTTCAATTTGCAGTATTGGTTTTGAATTGAAAATTTTCACCTTGATGGATCCACGTTTCGAGTCCAATTTCATCAACGGTTTTAAACCTAACAACCAAGTGTCCAACACGGTTGTTGTAGAGGATCAGTTCCTTGTCCCTGTTAATGGGATGATGAGACCCTTTGAGTTTGGATTCGGGGATAACTCGTTAATTCTTCCACCTGATCCAAACGTTGCTCAGAACCATGTTTCCTTTGCCACCGACGAGGAGTGTCCACTGGACGAGATTGATTTTTCTGCTACTGTCTTACGTTACATAAACCAAATGCTTATGGAAGAGGACTTGGAGGCGAAGTCGTGTATGTTTCATGATTCCTTGGCTCTCCAAGCTGCTGAGAAATCGTTCTATGAGGCCATTGGTGAGACACACCCTTCTTTAGTAAAAACCCATCACAACGTAGACAGCCCTGAGGACAGTAGTTTCAGTGATTATGGCAGCAGTGGTACAACCACTAGTAATGGTAACTCGATTGAGTCTCATTGGGGTAACGTTGATCTTACTGACTATAAGCCTTCTATACTGCAAACCACTTTTCCCACTGACTTTGTTTTCCAGGCCACTTCAATCCAATCTTCTATGAACACCACAAGCAACTTCAGTGTTACCGATAGTGGATTCTTGCATAGTTCTACTGCGGCTGGAATTTTGGATCCAACCTTGTTTAGCAAGAGTGAATCTGTTCTGCAATTTGAGAGGGGTGTGGAGGAAGCCAACAAGTTCCTACCTAAAGGGAATCCTTTGGTTGTTGACTTGGAGAAACCCTCTTTGAGGATGGTTCCACATATCCAAGAGGAAATTAAGGTAGAGAGAGATGAAATTTTTGCTGAGTTAAGAGGAAGGAAGAATCACGGGCGGGAAGATGAAGAAGCAGATTCGCAAGATGGGAGAAGCAACAAGCAGTCTGCTGTGTACATTGATGACAGTGAGATATCAGAATTGCTTGATAAGGTTCTGCTGGGCACTGGATGCAGAAAGGAGCCAGCTCCTTTGTGTATTTGTTACGCAGACCTTCCTAATGGAGCATCCTCGAGTGCACAGAAGAAATTAGAAGAAACAAACAAGTCTGGTGGTGGGAAGAGCCGTGTTAAGAAGCAAGGCAACACAAAAGGAGTTGTGGATCTGAGGACATTGTTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGTGTGTCTGCTAATGAATTGCTGAAGCAGATAAGGCAACATACTTCTCCGCTGGGTGAGGGGACTCAGAGGCTGGCCCATTGCTTTGCAAATGCTCTTGAAGCACGTTTGGCTGGGACAGGCACTCAGATTTATACTGCTTTATCATACAAAAGAAACTCTGCAGCAGACATGGTGAAAGCTTACCAAATGTATATTTCGGCTTGTCCATTCAAGAAGCTATCTATCATTTTTGCAAACCATACAATTTTGCAGCTAGCCATGGAAGTTGAATCTCTTCATATTATAGACTTTGGCATCCGTTATGGCTTCCAATGGCCAGCTCTTATTTATCGTCTATCAAAACGACTTGGGGGACCTCCCAAGCTGCGGATAACAGGGATAGAACTCCCACAACCTGGTTTCAGGCCAGCAGAGAGAGTCCAGCAGACGGGACGTCGCCTTGCAAGATACTGTGATCGGTTTAAAGTTCCATTTGAGTTCAATGCCATTGCACAGAAATGGGAAACCATCAGAGTTGAGGACTTGAAGATAAAGGAAAATGAACTTCTTGCAGTGAATACTATGTTTAGATTTCAGAATCTACTTGATGAGACAGTTGTGTTGAATAGTCCCCGGGATGCTGTTTTAAGTTTAATAAGGAAGGCAAATCCCACTATCTTTATACATGGTACTGTCAATGGGAGCTACAATGCTCCATTCTTTGTAACACGGTTCCGGGAGGCCCTTTTCCATTATTCTACTTTGTTTGATGTGCTTGATACTAATGTGAGTCGTGAAGATCCAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGTCGGAGGGTAATGAATGCTTTAGCTTGTGAGGGTTGTGAGAGGGTTGAGAGACCCGAGACATACAAGCAATGGCAGGTTAGGAACATGAGAGCTGGATTTAGGCAACTGCCCTTGGATAAACATCTCATCAACAAATTAAGATCCAAGTTGAAAGATATTTACCATAGTGATTTCATGCTTCTTGAAGATGCCAACTTTATGCTGCAAGGTTGGAAGGGCAGAGTAGTTTATGCTTCATCTTGTTGGGTGCCTGCATAGGCCTTGACAGTGATCTTCTCAGGGTAGTTTATTAGGAGCAATGTTTCATGTGTTTGTAGGTAGACATGAACTTCCACAAGTTTATTTATATGGCTTAAACTTCACTTATTCTAGAAGCTTATCCCTGCTAATGGAATCACACAAGTTTTAAATGATCAAGTCATGAGCATGACACATTCAAATGTTGAACTCTTCCTTGTTGAGTTCTTGTGATAGGTAAGCCTAAGCTGCAGAATCCTGCAGAATCCTGAGATTGTAGAAGTTGAAATGCTGCCAAATACATCCTTCACTCCACCTGAATTTTAGATTTTTGTGTATTGTCCTTGTATTTTTCAAAAAATTTCACGTCAATGTACTTTAAAAAAAAAAAAACTTATAAATGAATCTGGAATCTCCTTCATTCTTTTCTTATCCTTCAATGTACTATTACAGTGTAGCCTTCGTAATTAAGAAGATATAACTGGTATGCATATTCTCTTTCTC