Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12597 LG3 18593196 18595290 PREDICTED: zinc finger protein WIP2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cell fate determination, fruit replum development, transmitting tissue development, regulation of gene expression, pollen tube growth, regulation of transcription, DNA-templated, fruit replum development, primary root development, pollen tube growth, regulation of transcription, DNA-templated, pollen tube growth, fruit replum development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, pollen tube growth, anatomical structure development, pollen tube growth, transmitting tissue development, cell fate determination, transmitting tissue development, fruit replum development, pollen tube growth, regulation of gene expression, primary root development, pollen tube growth
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/G 18593234 missense_variant p.Cys13Trp
A/T 18593297 synonymous_variant p.Pro34Pro
G/C 18593400 missense_variant p.Asp69His
C/T,A 18593402 missense_variant p.Asp69Glu
G/A 18593445 missense_variant p.Ala84Thr
A/T 18593456 synonymous_variant p.Val87Val
A/T 18593473 missense_variant p.Glu93Val
T/C 18593476 missense_variant p.Leu94Pro
G/A 18593477 synonymous_variant p.Leu94Leu
C/A 18593641 missense_variant p.Pro149Gln
A/C 18593770 splice_region_variant&intron_variant
C/A 18593771 intron_variant
A/G 18593966 intron_variant
A/T 18594157 intron_variant
T/C 18594266 intron_variant
C/T 18594282 intron_variant
A/T 18594290 intron_variant
A/T 18594316 intron_variant
A/G 18594328 intron_variant
G/T 18594508 intron_variant
C/T 18594511 intron_variant
A/T 18594571 intron_variant
A/G 18594800 intron_variant
G/T 18595261 missense_variant p.Ala325Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12597.1
MTNSYRSNDLNFCLDLNSPCLLSSPSSSPPPINPSFYFPSNYHTYTSPPPHQTKLLPFLHLRHQQQQQDDDEEEEECLESSFSAMEVDKKKKELSTSSSSKCLDEEDAVTVALHLGLPSTAASADLASSLYSAEVSDKGEKTTDASGLPSDRINRGQYWIPTSAQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFVCRKCCKTFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAHGNDCMNLDQDDDQAGSEIEQEN*


CDS Sequence:
>Vu_12597.1
ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGCTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCTCCTCCTCCCATCAATCCATCATTCTATTTTCCTTCCAATTATCATACCTACACTTCTCCTCCTCCTCATCAAACAAAACTCCTTCCTTTCCTTCATCTAAGACATCAACAACAACAACAAGACGATGATGAAGAAGAAGAAGAATGTCTTGAATCTTCATTCAGTGCCATGGAAGTAGACAAGAAAAAGAAAGAGCTGAGTACATCATCATCATCCAAGTGCTTAGACGAAGAGGATGCTGTCACTGTGGCTTTACACTTAGGGCTTCCAAGCACTGCTGCATCTGCTGATTTAGCTTCAAGCCTATACTCAGCAGAGGTTTCAGACAAAGGAGAAAAAACCACTGATGCTTCGGGGTTACCGTCAGATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCCCTCAAAGATCATATCAAGGCATTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA


Promoter Sequence:
>Vu_12597::LG3:18591196-18593196(+)
GCTTTGAGGACCCAAGTCGACCACAGCGTGCAAGCCAAAGCAAATGCTTCTATTCAAATCCATTAAAGTATTTTTTTTTTTCCGATGATGTCAAACAAACAAACTATGTTTTCCTCGGAAATACTAATTACCAGCACTTCTTTCAATTGCTTAATATCATACACACGGTTACATTCTCAAACTTCTTATTTAATTATTAACATAACATAATACTTTTTCATAGTAATTCTCTTAGATAATTTTAAAACCATAGTTACTTTCAAGTAGTGTAACAAAGTACAGAGCATGAAAGTTGACTGTGATCTATCATTGAATTATTGAAATTCAAATATGATTCTAAGTTTCATGTTAAATAAAAATAAAAATAAAAATATTATATAAAGTGAAAAATTCATTAATTTATTGTCTTAATATTTTGAATAAAAAATAAAATTAATTTTTTTATGTGATTAAACTCTGATTTTATTAGTATTTATATTTCTTTAATAAACCTCTGTTATAAACTCAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGGTTTGCTAACGCGCGTACGTCTATTTTTCAGTTGGTACATTTTAGCAATGTGTACCGGATTTTAGTAGACAAAAATATCCTTATATATTATGGATTCCAAGTTTTAAGGTTAAGGGTATTTTAATAATTTTCATTCTCAAAACTTAAAAAAAAAAAAGAAGAAACCCCCCAAACCCTTACTCACCTCTCTCATTCCTCTCAATCCTTTCTCTTTCATCTCTCTCACTCCAACCTTTTCTTTGTCATCTCTACTGTAGTCCCAATTGAAAAAAATCAGAAACACATGCCTTTAAAAAATTTTCCTTTGTAAAGAGTTAAGTCATTGACATATTCACCTTCAAGGCAAAGGTTCATTCAAGATCTCTTCAATTTCACCATCTTCACTAACCTCTCTAATTTCATCATCTGTATTTGTTGAATCATCATCTCTAAAAAACCCTCCAGGCCAATTACCAATTCTTTCGGATGTCATTATGCTTGTGAAAATTAGATAAAATTAGATTAGACAAAAATTATAAAATAAAAACTCATTATAAAATCATTTTTTGTAAGAAATTGTTTAACAGCGAGTATTTCTGATTTTTTTTCCAGGTCAATTATCAATTCCTTTATGCTTGTGAAAATTGGATAAAATTAGATAAGACAAAAATTATAAGATGAAAACTCATTATAAAATCATTTTTTTGTAAGATTGTTTAACAGCAAGTGTTTCTGATTTTTTCAATTGGGGTTACAGTAGGGATGACAGAGAAAAGATTGGAGTGAGAAAGAGGAAAGAGAAAGAGTTGAGAGGAATGAGAGAGGTGAGTAAGGATTTGGGGGGATTTCTTTTTTTCCTTTTTTAGTTTTGAGAATGAAAATTATTAAAATACCCTTAACCTTAAAACTTAGAATCCATGATATATAAGGATATTTTTGTCTACTAAAACCCGGTACACATTGCTAAAATGTACCAACTGAAAAACAGGCGTACGCGCATTAGCAAACCCCATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTGGTAAATGAATGTTAGTGAATGTTAATTTGAAATATTAAAACGAAGCATGATTATGAAAAGCTAAATGACAAGTGCATATTTTTAATAAACCAAATTTTATATTGAATCTGTTGAACTTTTTTCCAAGTGATTTCTTGTCTCCCTCAACTTTATTGGTCTTGCTTTACCAACATTGAATTAATTTGTTCACATCCTTTAACCCTTCACCTAACTCTTTCATTGTAGCTATTTTGCTTGTTAAAAACTGAAACTATCTTCTGCACATCTCAACCCTCACTCCACTACCCTTTCCCTTTATTCTGTGCACTCAGTTGGGTATAATTAATATCACAACCCTTTCTATAGCTGATCATACACCTTTTTCTTTTCACCCCCTCATCA


Gene Sequence:
>Vu_12597(+)
ATGACCAATTCCTACAGATCCAATGACCTTAACTTTTGCTTGGACCTCAATTCACCATGTCTTCTCTCTTCTCCTTCTTCATCTCCTCCTCCCATCAATCCATCATTCTATTTTCCTTCCAATTATCATACCTACACTTCTCCTCCTCCTCATCAAACAAAACTCCTTCCTTTCCTTCATCTAAGACATCAACAACAACAACAAGACGATGATGAAGAAGAAGAAGAATGTCTTGAATCTTCATTCAGTGCCATGGAAGTAGACAAGAAAAAGAAAGAGCTGAGTACATCATCATCATCCAAGTGCTTAGACGAAGAGGATGCTGTCACTGTGGCTTTACACTTAGGGCTTCCAAGCACTGCTGCATCTGCTGATTTAGCTTCAAGCCTATACTCAGCAGAGGTTTCAGACAAAGGAGAAAAAACCACTGATGCTTCGGGGTTACCGTCAGATAGAATTAACAGAGGACAATATTGGATCCCTACTTCTGCTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCTCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGGTTTGTCACCTTTGGTCATTTTGATGATCAATTCCCTCGATAGAGGAGAATAATAAAATATTCAAGATATACGATAATTAACTGTGAATAGAATTATAGAAAGAAAGAGAATATCTTTCCTTTTCCCAGCTTTTTCCTGTTTTTCTTACTCTCCTATACCCCTACTTTCACAGATCCCGTTTTCAGAAAAGTTGTCCCAAAGAAAATCAATTCTTCTCAGTTCTATCTATAGTATCACTTCAAGTTTTCACCTGAAATATTCCTCAAAGGAGGAAGATTTTATCCGCAGTGTGCATTATAATTTAGGGTTTTCCTGGTTAGCCTGTTACGTTTCTTTTCCTTTTATTTGAGCTTCAAACTACTCGATCTATCACCCTTTTTCTGCTAAGATAAAAATGAGATCTCTCACTTCTTCTGTGAAGATCAGTATCCAAATATATGGTTAATGATATTCCTTTTTGCATCTACAAGGTTTTTCTCTCTCTCCATAAGTTAATTATAAGTGTAATTAGTTTATACCAAAAAACATAAACACACCGACAAGGGAGACATAAATTGAAACGACATCAATTGAGTTACATAAAAATGAATATAAATATATTTAACTGTACAAATATTCTCTTGCTGGGCTCCTGAACTTTTTCTTTAACAGGATGCCCTACACTGGCACCTATTTCTTTAATCACACAGAGCGTTGTTGATGAACAAGCTCTAAAACTTGTTAAAAGGAAGCAGTTCCTAGTTAGCACGTTTCGGTGTTAAGATTTGTAAAGAGAGAGAAGATAGTACAAAATTTTCTTCTTTGATAAATATTCCAAATTTAATGTTTTCTGAAAAATGAGCATTATATTTATTTATTTTATATAATTGTACAATCCTCCTTTCTCCATCAAATTCCTACTGAAAGACCTGGCCGACATATGGTAAAGTAATTCAAATTCAAATTCTAAATTTTTTCATAACAACATGCAACAAATTAAAGACCTAGTTTCAGGTTTGTCTTTTATAGTTTATTTTTCTTCGTTTCCTTTCCAAGTATTGACTATTTGGTGTTATTATTACATCATAATAATATTGGTGGAGGAATTTTCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGGCTCCCTTGCTATTGCTGTGCTCCAGGATGCAAGAACAACATCGACCATCCGAGAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGACAAAGCCTTTCGTGTGCAGAAAATGTTGCAAAACCTTTGCTGTGAGGGGTGATTGGAGAACTCATGAGAAGAACTGTGGGAAACGCTGGTATTGCTCTTGTGGCTCTGATTTCAAGCACAAAAGGTCCCTCAAAGATCATATCAAGGCATTTGGATATGGACACACGGCTCATGGAAATGACTGCATGAACCTTGACCAAGATGATGATCAAGCAGGTTCTGAAATTGAACAAGAAAATTAA