Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12603 LG3 18644329 18647159 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root meristem growth, root development, root development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, pattern specification process, meristem maintenance, root meristem growth, root development, root development, stem cell population maintenance, root meristem growth, telomere maintenance, telomere maintenance, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 18644370 missense_variant p.Ala527Val
T/G 18644512 synonymous_variant p.Arg480Arg
C/T 18644517 missense_variant p.Cys478Tyr
G/C 18644576 missense_variant p.Phe458Leu
A/T 18644580 missense_variant p.Val457Asp
C/T 18644869 missense_variant p.Gly361Arg
T/A 18644917 missense_variant p.Ser345Cys
T/A 18644944 missense_variant p.Arg336Trp
T/A 18645065 missense_variant p.Arg295Ser
T/C 18645111 downstream_gene_variant
T/G 18645424 downstream_gene_variant
G/A 18645573 intron_variant
T/C 18645650 intron_variant
G/A 18645786 intron_variant
T/G 18645803 intron_variant
T/A 18645880 stop_gained&splice_region_variant p.Arg249*
T/C 18645919 missense_variant p.Lys236Glu
A/G 18646143 intron_variant
T/C 18646183 intron_variant
T/C 18646202 intron_variant
A/C 18646227 intron_variant
A/T 18646235 intron_variant
A/G 18646438 synonymous_variant p.Phe179Phe
C/T 18646631 missense_variant p.Ser147Asn
G/T 18646894 synonymous_variant p.Ser59Ser
G/C 18646895 missense_variant p.Ser59Cys
T/G 18646943 intron_variant
G/A 18646956 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12603.1
MNNNWLSFPLSPTHSSLPSHDLQATQYHQFSLGLVNESMENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFTNNSLVPLQNPVVDTPSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDISSHFSHQDPLHQGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNHPALLQGMMNMGSSSSSSVLENNNNNNSSVGGFAAGSGFGMASNPSSGNAVGAAEELGLVKVDYDMPAGGYGGWSAGAAESMQTSNGGVFTMWNE*


CDS Sequence:
>Vu_12603.1
ATGAACAACAACTGGCTTTCTTTCCCTCTTTCTCCCACTCATTCTTCCTTACCATCCCATGATCTTCAAGCAACTCAGTACCACCAATTTTCCCTTGGGCTGGTGAACGAAAGCATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAACAGTCTGGTACCTTTGCAAAACCCCGTGGTGGACACACCAAGCAATGAGTATCAAGAAAATGCTAACAGTAACTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCTACATGTGAAACCAGTGGTGAAAATAGTACAAACACTGTCGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGTCAGAGAACATCCATATATCGTGGAGTAACACGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATAAGAAGGAAAAGTAGTGGTTTCTCTAGAGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGTTATGACGTGAAAGCTATTCTCGAAAGCAACACTCTCCCGATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGTGAAGAGATGATTGCACTGGGCTCATCTACCTTCCAATATGGAACCTCAAGCTCTTCCAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATAAGCTCTCACTTCTCTCACCAGGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGCGGCTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCATCTGTGTTGGAGAATAATAACAACAATAATAGCAGTGTTGGTGGGTTTGCAGCAGGGAGTGGGTTTGGTATGGCTTCGAATCCATCGTCGGGTAACGCAGTGGGCGCGGCGGAGGAACTTGGCTTGGTGAAGGTTGACTATGACATGCCAGCCGGAGGTTACGGCGGTTGGTCGGCGGGGGCGGCGGAATCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA


Promoter Sequence:
>Vu_12603::LG3:18647159-18649159(-)
TGATTAGTGTTTATGCTCTGAAAATTGTATATTCAATTACGGAGTCGTTCTTTTCTATAAATATAGCTGCGCTTTTAATCTTCTGTCTCCATGCATCAAACAAATGTGTAGCCATGGTATACCTTATATAACAGGAAAGTTTATGTGAAAAAAAATTGTTACTTTAATATTATAACTCAGCTTGTTGATTTGCTACATGTCCACACAAGGATAGCTTATAGCTCTCTCACGAGATGTTCCTTTTATTTTTAAATAAATCAAAATGTATAATATTATTCTAGCATTGTAATTTCATCCCTCTCAACAACACATTATTGTATGTCACATTTACATGATATCAGCGATATAAAAATCATTGTTTGTGTGTATAATTGTACTGAACATTTTAACGTTGTGCTTAAGCTACCAAATATATGCTCATAAAAGATATGCGTGTGCGTGTGTTGTGCTGTAATTGCGGTATATTACGAGATCCAAGCTTTGCCAAGCTAGTAACTTATATTATTCCCTATCTCTACTAGCTGAATATACTATAAACTATTGAGTGATAACTTAGACATTCCATAAAATATGAAATATTTGTGCCATGTTCAGTAATGATTATTCGTTCGGATACGTGAAGATGCATTAGGGTTAACATAGGATGGTGAGTGCGGGCAAGTTAAGCCACTGTACATAAACGGTGGTTGGGCAGATCGCAGATCTTTTTATAATTTGTATATATCCTATAAATGGTGTTTTTAGGAGGAAACTTAACCTAAGCAGAATACAAGCTTCTGGTGTTAGTGCAGATAAATGATAGCATATGTCTAAGTTAAATTAAACTAATTGAAGCTAGTGGGCTTTTGACGGGTGAGGAAATCGAGTAGGTGGTCAACATATTTTTACTTGGGGAACAAAAAAAACCCTTCAAATTATATTTCTTAAATGCTGCTCAATTGAATCACGTTAATTAAATAATATTAATATGCAATACAGCTTGGTCTCATTTTGAACAAAAAGTAATTCTTACTCTTTCATTCAGTACTTTTAATTTTTAATATGTCGGATTTTCACCATATAATAATGCATGACCGTACTCATGCATCTTTAACACATGCAGGACTCGGGAATCCATAGATTGGTTTTTCTTTCTTAATTTATATACCGAATTCCAGAGTTTCTCTACAATGGACTTGATCTTCTACCTGATGTTTAAATATCCCGTTTCAGATCTTTATTTTGGTTTCCTTCATTATATATATATGTATGTATTCATGTGGCTTGAATATACAAGGAGAGAGAGAGGTCGGTAGTCTAACTTTACGTAGAGTCGTTGATTTTGAGACCGAGAGATGATTTGTAGTGTGTGGGAATGCTGGGCTTTTGGGAGTCATTGTTTTCACAGAACGAGGACGAGAGTTCCAATAAACCAAGTGGGTGGAGAGAGAAAGAGAAGAGGTGTATGGCATTGTATTTTTTCCAGTTAGAATGGTGGTATTGTCTCTGGTCAAAGACTGAAGGATTTGAAGGATAATAGTTTAATAACACACTCGTGTCCCTGATAATATCTTATTAGATAGATATTAATTATTTAATAATGATTGTAGGCAGATTTTAACTTTGTTTGCTAGTGTTGGAAACTGGTGGAGAAGAGTCAGAGTCTACAAAATCGACCATAGCTAAGAGGGTGTCACAGTCACACATCATTTTAACTATTATACCTGGTAGGACAGAGAACGGGGAAGAAGGGAAGAGCTTTAAATAATGCTAAAATGTTCCTTTCTTAGCCCTTTCTCCTCTTCCATTGTCTTAAGCTTGGAAGTTGAAAGGCTTGGGAGATACAAACTGTTCATTGCTAGAACCCTTGGTAAACCTATATATGTTTCTTTGCTCTTCTCTTATTTTCCACATCTTTGGTTTCCCTTTTGCAAATATTCTTCATATCTTCTCCATATCTAATGTGTTAGATGCAGCTGTTTTTGATTTGTTGAAAGGTAAAGCAAGCAAATAAGGGCTCG


Gene Sequence:
>Vu_12603(-)
ATGAACAACAACTGGCTTTCTTTCCCTCTTTCTCCCACTCATTCTTCCTTACCATCCCATGATCTTCAAGCAACTCAGTACCACCAATTTTCCCTTGGGCTGGTGAACGAAAGCATGGAAAACCCTTTCCAAAATCATGGTAACCTTCTCTCTCTTCTCTCTCTTCTCATTCTATATTTATTTGCCTTGCTAATCTTTCTTTTCATCTATTTAATTAATTCCACAGATTGGAATCTGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCACAAACAACAGTCTGGTACCTTTGCAAAACCCCGTGGTGGACACACCAAGCAATGAGTATCAAGAAAATGCTAACAGTAACTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCTACATGTGAAACCAGTGGTGAAAATAGTACAAACACTGTCGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGTCAGAGAACATCCATATATCGTGGAGTAACACGGTTGGATACTCATTCTGTGTTTCACTTAATCAATATTTTTTGTGTGTGCAAGGTTTGTTTATTTATTGTTCTAATTAAATGTATATATAAACAGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGGTGATTAAACTTCATATCAATTCATTTTTAGTTTTATTTTTGAAGTTTTTTAGGTGATATTTATTGATTGAGAGTTCTATTAACACATTTCTCTTGATGTTTTGCTTTTGTTCATACTTCTCATCAACTTTCCTTCAGTTTATTTGGGTAAGTGTTTCCATTTCAGTCTATTTTCCAGCCCCTTTTCATTTTCTAAGTTCCTGGAGATAGAAAATCAAACCACAAAATGTATTGTTTTCCTTTTGTTATTTATAATGTCAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAGTAAGTTAATGGTGTACTTTCTCAATGCTTCTCAGACTCTATCTAGTTCAAGGAAATCTTGTTTGTTTTACTTTAATTTTTCCACAGATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATAAGAAGGTGACTAATTCAAAGACAGCGTGCATAAAACATGTACAATACAAGTCTACAATAGTGCAATAACGGAGACAAGTAAAATTAATTTTTGAATCCAGTCCACTTTGTTACACAAACACACTAGCATAGTTTAATTAGAGTCACTTGCTAAACTTTTGACAACTGAGAACGCAATTAAATTACGAACTTGATTGTGGCAAACATTAAAATACACAACATGGCTTCGTTTTGATGAGTTTGTATCTGATAGTTATCGAAATAGGTTAAAAAGTTTATAACACCATTTCATAATATTCTTACAACTCTTTCAAATGCTTATTAATAGGCATATTGTGGTGGTGATTTGCAGGAAAAGTAGTGGTTTCTCTAGAGGTGCATCAATGTATCGCGGAGTTACAAGGTTTCAAATGGAGCAGCCATGCTTTCTTCTTCTTCTTCCTCTCATCCCATGCATTCGATCCTTTTCTTTCTACTCTTTTCTTAGCAGAATATTATTATTCTTTGATCAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTAAGCCACCCACATAAATTTAAACATTGAAAGTTACACTAATCAGATTTTCAAATTAACCAACGTGAAACAATATTTATTAGGAAAAAAACATTACCCCATATGTTATAGTATCTCGAACGATTAAAGTCTTTGAATTTTGAACCCGGATGTCTTATTAGATTCATGAAAGAAAAACAAATATATATAGGTGAAATATACATTATTTCTCGTTGCAGGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGTTATGACGTGAAAGCTATTCTCGAAAGCAACACTCTCCCGATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGTGAAGAGATGATTGCACTGGGCTCATCTACCTTCCAATATGGAACCTCAAGCTCTTCCAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATAAGCTCTCACTTCTCTCACCAGGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGCGGCTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCATCTGTGTTGGAGAATAATAACAACAATAATAGCAGTGTTGGTGGGTTTGCAGCAGGGAGTGGGTTTGGTATGGCTTCGAATCCATCGTCGGGTAACGCAGTGGGCGCGGCGGAGGAACTTGGCTTGGTGAAGGTTGACTATGACATGCCAGCCGGAGGTTACGGCGGTTGGTCGGCGGGGGCGGCGGAATCCATGCAGACGTCAAATGGTGGGGTGTTCACAATGTGGAATGAGTGA