Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12609 LG3 18713208 18717156 PREDICTED: transcription factor bHLH130-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, photoperiodism, flowering, regulation of transcription, DNA-templated, photoperiodism, flowering, cuticle development, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, cuticle development, photoperiodism, flowering, photoperiodism, flowering, regulation of stomatal movement, photoperiodism, flowering
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein dimerization activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/A 18713308 5_prime_UTR_variant
A/C 18713309 5_prime_UTR_variant
A/G 18713471 splice_region_variant
G/A 18713482 5_prime_UTR_variant
C/T 18713710 5_prime_UTR_premature_start_codon_gain_variant
A/T 18714155 missense_variant p.Gln102His
T/C 18714605 intron_variant
A/T 18714708 intron_variant
T/C 18714733 intron_variant
G/A 18714780 intron_variant
G/C 18714818 intron_variant
G/T 18714824 intron_variant
C/T 18715046 intron_variant
C/A 18715060 intron_variant
C/T 18715229 missense_variant p.Ala214Val
G/C 18715458 synonymous_variant p.Pro290Pro
T/A 18715559 missense_variant p.Asp295Glu
A/G 18715628 synonymous_variant p.Ala318Ala
T/C 18715634 synonymous_variant p.Ile320Ile
A/G 18715682 synonymous_variant p.Ala336Ala
G/A 18715734 intron_variant
A/C 18715767 intron_variant
C/A 18715977 intron_variant
C/T 18716166 splice_region_variant&intron_variant
A/T 18716433 intron_variant
C/T 18716439 intron_variant
C/G 18716462 intron_variant
A/T 18716526 intron_variant
G/A 18716540 intron_variant
C/T 18716563 intron_variant
G/T 18716587 intron_variant
T/C 18716919 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12609.1
MESDLQQHPPMFLDHQQPTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADADAADAADAEDALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQHQQQQQSNINNYGSSAPQNFYQNIGRPPLPNQIETGRRSASNLIRHGSSPAGLFSNFNIESGYAAVRGMGTMGAANNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKNNTQNNAENEGFADSQGNEFIPGFPVGSWDDSAIMSDNMTGLKRHREEDVKPFSGLNLPESQNDAGGQPSTALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSENRDKCTCSHNQQHQQQQQ*


CDS Sequence:
>Vu_12609.1
ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCAGCAGCCGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCTTATTTTTCGAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCTGATGCTGCTGATGCTGCTGATGCAGAGGATGCGCTTCCTACTCAAAATCCCTCTACCGTTGTTGCTGTTAAAGAAGAGGTTAATCAACAGCCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCTCTTGTTCTCCAACAACATCAACAGCAGCAACAAAGTAATATCAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACATTGGACGACCACCTTTGCCAAACCAGATTGAGACCGGTCGTAGAAGTGCTTCAAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACTTTAACATTGAAAGTGGTTATGCTGCTGTAAGAGGCATGGGGACTATGGGAGCTGCTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGATTAATGTCGTCAAGGGCTGAAATTGGAAACAAAAACAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGACAGCCAGGGCAATGAATTCATCCCTGGTTTCCCCGTTGGTTCATGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGACACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACCTACCGGAAAGTCAGAACGATGCAGGAGGCCAACCTTCCACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCAAAACGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTATCGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGAAAATCGCGATAAGTGTACGTGTTCACACAATCAGCAGCATCAGCAGCAGCAGCAATAA


Promoter Sequence:
>Vu_12609::LG3:18711208-18713208(+)
AATTTAATTACATAAAAAATTAATATCATTTTTAACTTAAAATTTTAACACAATAAATTATTGTATTTTTATATGATATTTTATTTCTTATTTTTACTTAACTAAAATTTTATATAATTAACTTCACAAACTTAATTTATAAAATAAATTTTACATGTATTTATATATTATAAATTTTTCAAAATTTAATTGATTGGTTACTTCTAATAATATGAAATTCTAATAATATGAAATACAGGGTGTGATTTAAGAAGAAAAACTGGAAATTTGAGTTGGGTCAACTTCTTCTGTCTTCTTGAAAAACTTTTGTTTGTTGTTATAGAATAAGAAATAATTTATAAGAAAAATGACACATATATTAGGGGTCCATGGAAATAATATTTTAACGCATCTTTGAGCACGAACGTACGCGTGGAACCATTGGTCCCCATGCACAACAGAGAAATATTTTCTCTTTTTCTTCCACTCCCACCAACACCAATATTCCAAGTACATCTGTTGCGGTTATCTTTTTTTTTTTAATCATTCAGATTTGTCTCAGATATTGTGTCTTTATTTTATGGACTTCATTTACCTTCCTTTCTGATGTAATTCGTGACGACCACTGGCTAAACTATTACTACTCCACCTCACATGCTACGAACCCTAGCTGGACAACATCTTTTTTTTTTTTTTTTATCTTTTCAAGACTATTTATTACATATAAATTAAACAACACGTGATCTTGAATCTGATTTATTAAATATGGAGGTTCAGAATTCACTACAAAACTAAGATGGTAAGAAAGTATACAAGAAAAAAAAATGCAGATCACTTCTTCGTATATATTCGTTTTTTGTAGATGTGCTATGTATTTTTCAAGAGAAAAACAATCATTTTTTTTATTGGAATATTCAGAGGCACTGATATGGACCAAAAGAATCATAGAACATTACCCAAATCAGAGTGTCGATGTCTAATATTTGTTACTTAGCTAGTACATAATATTCATGGATTAAAAATACTATAGGATTTAGAATTATTCTCATGTTCTGTTGGTTTAATCCAGTTAAATCCTTAGTATTATATATGTTTATTTATCTTTGTATAAATAGTAATTAGTACGAGACATGTTAAACACTTTTAAGGGATAACAAATTAAGAAAAATGTGTGGCCGAAAATAAAATTAAAAAAGGTGGTATGAAGGCGTTGACAAAACAACACACACGACTGGAAAAAAGATAATGTTTTCTATAAATGGAAAACGATGAAACGTCATGTGAAAAGTTTAGCAACATATAATTGGAGTCTTTTTTACATAAATTTGGAAAAGAAACATTTGTAGTTTATTGAGTGACTCAATTATTATTCTTACTAAACATAAATACAAGCAACCTTAAGCCAAATGTTTTTATGTTACACCTTAAACCGAAGGGGTTGTACTGTAGCCATATTTACCTTTTTACTGAACACTAGAGCAAAACTACTGCAACCCTGACATCCACATATTGACAAAAATTATTTGAATGCTTGAAAGATAAGCGAAGTGATGTCAAGTTAAGAAATTTTAAAGAAAGTCAATGGAGAGAATTAAAAGTTTAATCTGTGTTGATTTTTATTATGTAAATAGTTTTTACTAATAAAAGAGGAAAAATATAAGATCCATCCATCTATTATGTGTGATGTGTGTTGGAAATATTTGTGCTGGAAAATGAAATGATAGTTAAATGATTTCATTGATGATGATGACGACGATGTGAATGAGAGATGAGGATGCGGTGGGGGAGAGGGAAGGCAATAAAGTCATTTCACCTCGTATATTTCCCATTTTATCAAAAACCTACCTTTTACTACTAAATATAGGATTAACTTGAGTTCTTTCTCCCTTTGGAACCCCCTCTGCCATCTTCCTCACCCCTTTGGTTTCACCAAAAAACTGAGGGTATTTTCGTAAAAGTCCAACTCAACACGCACCACAAATCTCAGAGCTGGATTTTTGGTTCTGTTCACTTCCCATTGG


Gene Sequence:
>Vu_12609(+)
GCTGCACCTCTTCACAAACCAACTAAATCCATTGCTATTACTTTTCTAATCGCTTTCTCTTTCTCTTTCTCTTGAACCTTCTCCCACCCATCTCCACCACCACTCCATACAACCTTAAACACCCAAAACAACACACACAAACACACTCACACACCAACACCAGGTACATACATATGTTCTCTCCAAACTTCCTACTTCCATCCTTTGCTCTTTTTTTGCCTGTCTTGTCCCCGTGAGCTGACTTGTTATTTTCACTTTCAGGAACAGAAAAACCGGTTACCGTTAGTTTCTATGACTTTCGATGTTATGTGAGTGTGATAGATAGAAAGTAGAAACTACAGCTCATATTATTTCTTTTTTATTTTTCTTAGCTTGTTCCTGATTTTGAGGCAGCCCAATTAGAGTTCTGAGAAGAATTATCTTTCTAGATTTGGTTTGAGGTGGTTTGCTTTGTTGGGTTTAGATCTTTGGAATTGTTCTGCTAAAAGCTGGGACAAAGATTCTGTTTTTCTGTGGAAATAGAGGTTCCAAGAGGTTGGTGTGATCTGATGAGAGTGGTTAGAAGTTAGAAGAAAGTCTAAGGGGAAAAGGAAGGTTTGGTTGTGATTGGGGGCACGTGTGGATTCAGAAGTTAAGAGGGTAATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCAGCAGCCGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCTTATTTTTCGAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCCGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCTGATGCTGCTGATGCTGCTGATGCAGAGGATGCGCTTCCTACTCAAAATCCCTCTACCGTTGTTGCTGTTAAAGAAGAGGTTAATCAACAGCCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCTCTTGTTCTCCAACAACATCAACAGCAGCAACAAAGTAATATCAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACATTGGACGACCACCTTTGCCAAACCAGATTGAGACCGGTCGTAGAAGTGCTTCAAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACTTTAACATTGAAAGTGGTATGTCCGATTTCTTTTCCTTCCTTTTTTGCTATTTATTTATTTATTTCATTTCACCTTTTTTTCCCTTCCTTTTTAAAGAAAATGGAACCATTTTTTTCATCGAGATTTTATTGTTTGTTTCCATCCCGGTTTTCTTTTCTTTTATTTATTTTTAAAATCTTCCCATGTTCGCGTAAGGGAGAAAAATCTTCTGGGAAAAAAATTATATCACTCCTTGGCAGTTCAGGTATAAATACCTTCAAATTTGTTGTTTTGGACACATTTTGCTGCCAGAGCAACTGGCAGATAGAAAAGGTCGGGAGAAAAGAAAAAGCAAAATTTCACTATTTTAAATGGATGGATTTTCTTTATAGATCAAACAAAGGAATTATAGCTATTAAGAAAATGCAGTTTTAAAAACGTAAAATAAAAAATGAGAGTAAATGCAAGTGTATAATAAATTATATCATTCTTTTTGTGGGTATGTAAAAACATGATAGATACTTATATTTGATGTTTTCCTCTGGTATCTCGTCAATTGATTTTCTAAATGAATTTCTTAAACGAGGTAAATCCTTGAATATGTTCTCGGTAGAATTTGGTGGGAATGTCATCATTTTGTAAAGAGGTTGGTTGAGCTAAACATGGGTACAGTGATCGATATTTCCTGGTTTAGGCTTTCATATTTATTACAATCTTCATTTTCTTACTCCATGAATAGGTTGTCATAATGACGCTATGCTAGATTGATTAACAGGTTATGCTGCTGTAAGAGGCATGGGGACTATGGGAGCTGCTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGATTAATGTCGTCAAGGGCTGAAATTGGAAACAAAAACAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGACAGCCAGGGCAATGAATTCATCCCTGGTTTCCCCGTTGGTTCATGGGATGATTCTGCAATCATGTCTGACAATATGACAGGTCTGAAGAGACACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACCTACCGGAAAGTCAGGTATGTACCATCGGATCGTGGTAATATATGGTGTGTAGTTTTGAATTGTAATGTCACTCTGATCTCTGTTTTGTTGCATTGATCAGAACGATGCAGGAGGCCAACCTTCCACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCAAAACGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTATGGTTTGGTTCTAGTTCTAGCCAAATTATTGGATTAAGTACTCTCGTGTGATGCATGTTTTTTTCTCGTTGTTTTTGGAAAATGCTTGCCTGTTTTTGAAAATTGTTTGGGAGTGATTATTTGTTTAATATATAAAGAAAGAAAGATACAAGACATGATAATAGGACCCACCATGATTTGTGTTGGTTCCATTCCATCAATGTTTTCTCTCTTGTAACAAGACACTGTTGCTACTCAAGCTTCCAGATCCCAAATTATTTCCTTTTCTTCTTCACTCGTACCTGGCTTCTCAATTCTAAAATAGGCAGCCGAAACTTTTGCTCAATAATTTTTGGTGACACGGAAAGGACCAAACACTTTGCATTGTTGAGTTTCGGTTTCATTGCATATGCCTAGGCATAATTGGGCAAATTTCAAATAGTCATCTGTTTCAACTGCCCTTCAGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGGTAACATTTTGACTTGTTGCACACAGTCACACGCGTCACCTTTTATGTGTGAGTGGTGGAGGACGCATATACCAATGTTGTTTTCCTCTATCTGCAGCAAACAAACACGGCAGACATGTTGGACTTGGCTATCGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGGTATGTTACAAACCAACCTCTATCATCTATCACTCCTATGTCTGCCCAGGTGCACCCCAAAATAAAACGATTTTGTTTGAAACAAAAACAGAAAAACCATTTACCACTTTGAGAAAACACCAAAACTACACAACCGTTTGCATCACCTCATAAATATACGTGTGGTCAAAACATTTACAGACGTTCAGGTACTCATTTTGTATATATGTTTGTGTATACTTGGTTAGACTCTTTCAGAAAATCGCGATAAGTGTACGTGTTCACACAATCAGCAGCATCAGCAGCAGCAGCAATAACGGAAAAAGGAGATACCCGCGTCATTCCGTGTACATACAGCTTAGTAATAATTTGGTCTGGAAACCAGTGCATCTTTCCGATAATCATGTAGCCACAACATTTCTTCAGCGGTTGGTTCTTTAGGAGTGGTGGCAAAATTACGCTTATAAAAGTTGACTTTATGATCAAAATTCGGTGCCACATATTCAAAGCATGGTGTACAATTTTTTTTCTGATATAGTCTATATGCCTTTAATCTTAGGGGGACCCATTACTCTTAGGGTGGGGGTGGAAAATGGAAATTTGCATTTTTGCAACTTGTTCGTCAATAACGTTAAAAGGGGATGTTATGTTATGTATGGGATTGAGTCCACATTGAATGACATGGGAAACATGGGGGGACCCAAGCCGACATCGTTTTGTTGGTTATATATAAACCCGTATGAGTATGAGCAGTGTGTTTTACTTTTTATTTT