Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12640	LG3	19051585	19054772	PREDICTED: probable transcription factor PosF21	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	response to salicylic acid, cellular developmental process, negative regulation of metabolic process
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/C	19051624	synonymous_variant	p.Gln223Gln
G/C	19051633	synonymous_variant	p.Thr220Thr
T/A	19051953	stop_gained	p.Lys171*
C/T	19051954	synonymous_variant	p.Lys170Lys
G/A	19052220	upstream_gene_variant
A/T	19052272	upstream_gene_variant
T/C	19052280	upstream_gene_variant
C/G	19052294	upstream_gene_variant
T/C	19052473	upstream_gene_variant
G/C	19052569	upstream_gene_variant
G/C	19052669	upstream_gene_variant
G/A	19052772	upstream_gene_variant
T/C	19053163	downstream_gene_variant
G/T	19053209	downstream_gene_variant
T/C	19053213	downstream_gene_variant
A/G	19053270	downstream_gene_variant
C/T	19053302	downstream_gene_variant
A/T	19053304	downstream_gene_variant
A/G	19053354	downstream_gene_variant
T/C	19053377	downstream_gene_variant
C/T	19053487	downstream_gene_variant
G/C	19053590	downstream_gene_variant
G/T	19053729	downstream_gene_variant
T/C	19053862	downstream_gene_variant
A/T	19054112	downstream_gene_variant
T/A	19054333	missense_variant	p.Glu147Val
C/T	19054358	missense_variant	p.Ala139Thr
G/T	19054628	missense_variant	p.Leu49Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12640.1

MERDKDNKSPPLPPSSSSSQPFSHDIVGMPDNPIKNRGHRRAHSEIITLPDDLTFDTDLPLDDDFLALVDHFNSPPLPEDDNKIIVNNNDYSSNNHDNNVGNERPRVRHQHSHSMDLSIQPEMLVSGADDVSGVDTKRAMSTDKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTDATSLSAQLTLLQRDTNGLNAENGELKLRLQTMEQQVHLQDGKAVLL*

CDS Sequence:
>Vu_12640.1

Promoter Sequence:
>Vu_12640::LG3:19054772-19056772(-)

CGTTTGTGCACAATTTGTCACTCTAGTGAGTGGCTTGGTTGTTGAGTTTTTATTCTTCTAAGTTGGACTTGCACTATTTCCCTATATATATAACCGATCTCTATTTAAATCTTAGTGTAGTTATATTGGATTTCTTGCGTTATTGACTTTATCAGTTCACTTTTTACCCTCCATTCACTGTATATATATGATATACATATTTAGTAATGTAATTATAATCTATTGTGATGTGAAGGATGGTGATTGTTAAAGCAAAGGAATGTCAGAGAATCAGATTCATCAATCTGCTTTTTGATTTCAAAAGTGAAAGTTTTATTATTCTAGTTCTACCTAAAAGAAAAACAAAACAAAGTTGATGTATAATGTATTATTATATTTATATTTATTCTCTGTAAGTGCTTCGTAAACCCTTGGCTTAAGATTCACTGCTTAAACTGTTTGTTCAACCTTTAATTATAAAAACTATATCATTAAAGCTTAACAATGTACAATAATATTCTTTGAAAATAGTATGTAATTTTTTTAAATTACAGATATTTTACTTTTTTATTTTTGAGAGAAAAAAAATCTAAATAACATCTAAATATTTTTTTAAGGAAAAACCTTTTTCAACGGTTGTGAATTCACACGCATTTTTTTACCGTAGACTGGACACGAATTCGGTTTTTTAATTGAACCCGGTCTTGTTTTCTAAAGTTATATATTATTATTTAATTTGAAGATGTAATGTTGATGATATTCTTACAATAATTGATTTTTCATTCGAAGTTAAACTCATTGACTATATTAATATATAATTACACGTATTTCAATTTTATCTTTTCTACTATTATATCAATTATATTTAATAGGTAGTTTATTTAATATGTAAAGAAAGTAAACTATCACAATATTATCGTACACAGTGAGTCTCGGTTGAATAACAATTTTTCTGTCCATATTCTAACTATGGTGATAATTAAAATAAATGTTTAAAGTGATCGTTTACTTTAGAGTATATAAGAATAATGCTCTTAGTTTTAAATATTAAAACTAATCAGTGTATAAATATACTAAAGTGGCAGTATTTAATGTGTAGAATTTGTCGTATATTTAATATTTAATGTGTAGAATATATGTTGCTGATATAATAATACTACTTCACTTAAACTATTCCATCAAACACTTGTATGATTAGAAAGGAACTGTGTGAATATAACTTTTGTAAAAGCATTAAGTATTTATTAATTTTTATTTCCAAACATGTAATAAATATTTAATTATTCCAGCAAAAAAAGAAAACAGTAAATGAAGTAGAAATTATACCTTATTTTAATTTAATTTAATCTCATTACTGTTAAGCGTTTAGAGTATCAAATAATACTAAAATATTTCTGAGGTTTGACCACCCCCACAGGACTTGAAATTTAGAGGACCAAATATCAATATTATATAATAGTTTATTACTTTATTTTGAATGATATAGTTATTTAAAAAATAATAATTTTGTTGATATCTGAAAAGACAATAACATTGAATAGAAGAAAAAAAAAGGATATAAAAAGAGAAGGAGAGAAAGAATGAGAGAAGGTCTGGTGTGTAGTTTGTGCTAACACAGAACCTGCAATCTCTGATAGGATTTCGGTTGAGTTTTCTCACTCCTCTCTCTCTCTCTCTCTATCTTTTCTGTTATGAGCGTTGTGATGTGTGCGTGATATGATCCAATCTGATTGAATAGTGTTATGGTTTTCGCATGTGATGTGATGTGAAATGGAAAAGGTGTTAGCAATTGTTGTTGCATCTCTGATCTAACGTAACATTCTTCCGCTTCATCTTCCATCAAATCCAAAGGTACTACCATACATACAATGCAATCATCATTTCCTTTCAATTTCATCTTCACCAATGTTAGTTATTCGTGATTCAGCAATCGATTAATCCATGAATCAAATGTTCAATGTTTCCATTGTTGTTATTGAATTTGATTTAGTTGGAATTGTAGTGTAGTGTTGTGTAGGGTA

Gene Sequence:

>Vu_12640(-)

ATGGAAAGAGACAAAGACAACAAATCCCCTCCTCTGCCACCTTCGTCTTCCTCATCCCAACCTTTCAGCCATGACATCGTCGGAATGCCCGATAATCCAATCAAAAACAGGGGCCATAGACGCGCCCATTCCGAGATTATCACCCTTCCCGATGACCTCACCTTCGACACTGATCTCCCCCTCGATGACGACTTCCTCGCCCTCGTGGATCATTTTAACTCCCCTCCGTTGCCTGAAGATGACAACAAAATCATCGTCAACAACAACGATTACAGCAGCAACAATCACGATAACAACGTTGGTAACGAAAGGCCGAGGGTTAGACACCAGCATAGCCATTCCATGGATTTGTCCATCCAGCCGGAGATGCTGGTCTCCGGTGCCGATGACGTGTCCGGCGTGGATACCAAAAGGGCTATGTCGACTGACAAGCTTGCTGAGCTTGCCTTAATTGATCCCAAGCGGGCTAAAAGGTACTCCTTTACTCTTCTTCTCCTTTCTCTCTATCTTTATTTGATGTCAGTCAAATAGCGAAAGTTTAGGTGTAGGTAATGTAAGTGAATAATTGACAATATACAACTTCTCTGAAATAGTTCTATCAGGCTTTAACTGGTTTTTCTTCTGTTAGGGGACATTTGTAGTCTCATGCAAAAAAAATAATTTTGAATGGACAAAAAGAAAAAACTGATTCTCAAAAGGGATTAGAATTAGGTGGCGTTGTTTATATCTATGGAGCAAGGATACATATATTCAATGGCGCGAATTTAAAAACTGTTTTTTCGGCTTCGACACAGCATTAATTAATGAGAGTCTGTTTTTGACTTATCTTCTTTAACGTTGTCTAATTGGTCTCATTGTCGATCTTCTTAAATTCTTCAAGTTTGACATTTGTTACTTTTGACAAACTCTAACTCCCTTTTCTCGAAATCTTCAATAAGTGTGCCTTCGGTCTAGGTCCAGCAAAAGTTTCATAAAGTTTGCATTTAATTTCATATTTTCCACCTCAAGAACAACATACACTTCTTATCTTCGTAGGATATTTCCGTAGACGTTCAGTATTATCATCTGGTTCTTTGGCTTGACTAGAACTAGGATTTAGAATACTCAACTCTACCACAATGTCAAACAAAATAAAAACAAACACAATACATTAAATTAATGAAAAATAAAGAAAAGAGCGTACCATAAACATTTGATCCACCCACGCATAGCATAAAGAGTATTACATAATATTAGCTAGGGAGAGAAAATATAAATTTATACATAGTATAAAAGTATACACAGCGCCAAGAACATCAACAAAAAAGAAAATGTGTTTCACTACAACAAAAATAGAAATTTCATATTATGTTTTGAGTAAAAATGATTAAGGAAGCGTCAAAGTTCACTGTATTCATAATAGTACTTCCTACACAAACTTTAGTGGTAGGTTTCATCGTGTTGTCAAGAATTGAGAAACATGCAATGGTGGGGAAGTGCAAAGGAGACTAACAAGGCATAGATGGCGGTGGTTAGAGATGCCGTCAATTTGAGAGCCAAGAAGGGTTATTTTTTCATTAAGAGCAGAGAAAACTAAAGAATTGCAGGAAAAAGAAAAATTAAATGCAAAATAAATAGTTTTGTTGAAAGATGAAATGGAGAAACTCTTGAAGTCTAAGAAACAGAGACATTGAGTTCAAACCATATGTTTTTGAGACAAAGTAAATGTATTTATATTGAGAAAATGAAGTCAATACAATAAATAGAAGAGATTTGATATCTATGATACAAAAATTAAATTAAAACATTCCTAATAATATATATTCTTGAATATAGTATCCACTCAGCTACTAAAAAAATTACCTCTTCGCTCATTAACATTTGTCACAGCCATGTCCAAGTAATAAAAAAAAACAGTTTTGAAGTTGTACGCTTAAATCTGACACATAGGGACACACCATTGTCCGTGCTTCATGGGCTCATATTGTTCATGGACAAGACAATTCCTTGGTTTTTTCCATCAGCTTTAGTCCAACATGGGAACTGCCGTAATTTTCTTACCGAGTGTTTGTTTCTGAATTGATTTTATACAGAAATATAAAAAGTAATCCTCTCTGGTCGTGACCTTTAGGTTTTCTGCATGATATTTGCGCCTCGTGATTGCTAGACTTGTTTATGTTGCTTTGATTGCTTTAGAGTCTATAAAGCTATGGGCTGTTTGGCACTGTAGGTGAAATTACGTGGTTTGTCTGTAGGTTATTAGTTAAGATCAACTAATAGCCATGTTTTTGCTTCATGTTGCGCAGCAATTACTTTGTTAAATTGAAATTGTGATTTACATTGTTGAATTTAGTGGTATCTGCCACTGTGCTTACTTACCTGTATGGGTTGCGAATTAATATTGGTTTTGGAAGTTCTCTTAGGGTTACGTTGTGAAATAAAGTATCAGGCATGGCTTTTTGTTATTTTTCATTGTCATTTCATTAATCTTTCTACCTTGCGTGGGGTCGCTGATGTATATTATGGAATAAGTTGAGTACATTTTTGCTCTTCTGAGCAGGAACCATGTCCACCTTTCTATTTTAGTAAATCTAAATCAGCATTCCAATATGTGACATTTCTGTATTCCTTTTCCATTGGGGACTATTGTCCCCCTTTGTTCTCAAATTTTCACCTACATTTTAAAATTAGTGGGAATACTGTGATTTTTTCTTGACTTAAAACACTTTCCATGAATCTTTTTATTAAAGGTAAAAAAAAAAAACTTAAAACCATGACTTATACTCCTTATGAGTGTGATAGGATATGGGCAAACCGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGACGCAACATCCTTGTCTGCACAATTAACTCTCTTGCAGGTATTCCCTATTTCGTCTTCATCTTATGTTGTGTACGTTTCTATTCCACTTATGGCAACGTCTGACAGCTATTTAGAAATATTTAACCTTCAGACGGCTACCATGTCTTTCTGATTGAAAACAAATAGTAGGAATTATAATCAATGTATTTTTGCCTCTTTACGAGCAGAGAGATACAAACGGACTGAATGCTGAGAACGGTGAGTTGAAGTTGCGGTTGCAAACCATGGAGCAACAGGTTCACTTGCAAGATGGTAAGGCCGTACTGTTATAA