Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12906	LG3	21318989	21320195	PREDICTED: protein FEZ	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	leaf morphogenesis, regulation of transcription, DNA-templated, inflorescence morphogenesis, inflorescence morphogenesis, leaf morphogenesis, regulation of transcription, DNA-templated, inflorescence morphogenesis, regulation of transcription, DNA-templated, inflorescence morphogenesis, regulation of transcription, DNA-templated, negative regulation of cell size
Cellular Component	located in	nucleus
Molecular Function	enables	DNA binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/C	21319498	intron_variant
T/A	21319537	intron_variant
G/A	21319579	intron_variant
T/G	21319612	intron_variant
A/T	21319621	intron_variant
G/T	21319888	missense_variant	p.Gln102His
C/A	21319921	synonymous_variant	p.Ala113Ala
T/G	21319922	missense_variant	p.Ser114Ala
C/A	21320098	synonymous_variant	p.Ser172Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12906.1

MATMEDMSMSGEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPVLCKIYRKATSLKVLEERAEREMKQMVGSPASPPSSTDTMSFSSPQEEANVPLPLPLLQHVLKKESESEETMACVVPKQEKTSSSNNNNKGSCGASSLQMPFGKDNLPDLQLPMLTDWTQDTFWAQLNSPWLQNLTPSNILNFY*

CDS Sequence:
>Vu_12906.1

Promoter Sequence:
>Vu_12906::LG3:21316989-21318989(+)

TTTTCTGTATAAATGTTGAATACTATGAGAAAGAAAAATGCAAGTTTCATATTACTAAAAAAAAATACTATATCATATTTGCAGTATAAAAGTGAGAGAAAAAATATGTTATTATAAAGTTGAATAGGATCCAAAGTCGTATTTTATAATGATATCAGAGGTTAATTAACATATATTTGTTAAAATTGTCACTTACACCTAAATTTTCCCATGTTGATTTAATGGCTAATGTCGTTGATAAGTTTGGACAATTTCAATTGGCAATTAGTCTTGTTTTGTTTCCAACTTACGAGGCAAAAACTGTGTAAGAGACTCATTATTCTTCTAATTTCGATTCCACCTTCAACTTTCAAGTCACACCAAAGAATCAAAATTTTCATATTACTCCCAACTATTCAAGCTCCTATTAGTATTTGAGACGAGGACGTTTAACGGGTCAAAGTACGTAATCACGGTTAATGAATTGAGTTAAGTAATAAAACTGTCACACAAATTTTTACTATAAAAAAGTTACTACTTTTACTTAATGCTTGGGTTAGAAATCTCATTTGATTAAAAACACATGTAGGTAGTCATAGTCCTGACAATCAAAGATAGTTTAGTAGTCAACCAACGAATCCAACTGATTACCCAAATAAGTTGGACAACCATGATCAATCGTAAAAGTTATTCCACAACTCGGAAAACAAAGCATCAAGCCCGACCAAATACTAAATAGGCCAACTAATCATACATTAGTTTGGATAGACGTTTCACATACTGTAGTGCAAGCCATTGAGTCTGACCAGTCACCAAACTAATCGACCGATCATGTACAAGTCTGGATAGCCAATCACCAGTTCGATGAACAAGACACCAAGCCCAATCAACTGTGCACCAATTTGGTTAGCCGTGCACCAGTTCGTATAAGTCAAGCATTAATTCGAATAGCAAGTCATCAAACCTAGGTGATCATTAAACATATTGTCCAATATTGAATTGGACTGGTCATGATGAACAGTACTAGAATAGACCAACTTTAAAATTGATCAACTTAATATTAAAGTGTCATTAATTACAATTGAGTTATAATTAGACTAATATTAATCAAAAATCTGCTACGAAACTTATAAATAAATATTTAAGGTAAAAAAGTGTATTACATACATTAATTGTTATATTAATTACTATCTGACAAATGTTAAATAATACGAAAGATTATTACTTAAACAACATTTAAACTTCGGATAACACATAAATCTGAACCATTAACTTTTACCCCACATCTAAAACAAATTATAATATGTGAACGAAATGTGAATACTTTTGTGGTTATATATAATTTGGAATTCCATTGGTAAACAAAATAAGATTATGTACGTATGTAGATAGGAGGAACTTTCCAGAGGTTGGAGTTGAGTTAGCAAATTTTGTTATGTTCTATATCGAGTCGTTGCATGTTAGTACGTATTTGGTATAACTGGAATGCTCTTTTAACCTCTCACATTTTTCCACACACAAAATTGCAATTAAACTTCAAATTTAAAAAAAATGGTATATGGATGAATTAGCATGAGGAATTTCCGGGTAAAATTCCAGAACCGAAAGAAAAAACAGGTCAAGCCATAACATATTAACATGTAACATCTGTCCCCACAGCACAGTTTAGTCTCTGCAGACTTTTTGTCAAGCCGCGTGGGTCCCACCACATAAATCTCATAATCATGTGCAGAGTCGCATTTACAAGTCCATATTCTTTCAAGATTTCTTAAAGAGACTTTTGTGCCTCAAATGCCTCCACGACCAAGTCATACCCCAAACCTTAGTAATATTACATCGTAAATAATGAAAAAACACAGTTAAATCCACAGTTGTGAAACCAACCATGCAGCATAGCTTATAAATACCCTTCCATCACATTCATTTCAGTGTATCAACCACCTTCGTGTTCCTCTGAGAAAAACATAACCACTGCACTAGCTTAACAGTACGTAGTCACATAAGCAACTAAATTGATGATA

Gene Sequence:

>Vu_12906(+)

ATGGCCACCATGGAAGACATGAGCATGAGTGGGGAAATTGCACTTCCTGGCTTCCGATTCCACCCCACAGAGGAAGAGCTTCTGGATTTCTATCTTAAGAACATGGTTGTTGGCAAGAAACTCCGTTACGACGTTATTGGTTTCCTCAACATCTATCACCATGATCCTTGGGACTTACCTGGTAATCATCCTTTTAATTGCTTCATTAATCACATCTCACTAACACGTAACAGAGATTTGACAACGTTAAATTGTTACATCACATACGTAGATTTGGCTAAGGTTGGGGAGAGAGAATGGTACTTCTTCGTGCCGAGGGACAAGAAGCATGGAAGCGGAGGAAGGCCAAACCGGACCACCGAGAAAGGGTTTTGGAAAGCAACCGGTTCGGACCGGAAAATAGTGACTCTGTCTGATCCCAAACGCATAATCGGGTTAAGGAAGACCCTGGTTTTCTACATGGGAAGAGCTCCCAGTGGCCGCAAAACCGATTGGGTCATGAATGAGTATCGTTTACCTGACAATTGCAAATTACCCAAGGTACTTTCTTTTATCCACCATGAAAAATTTTGGATTTTGACGTGACCCATGAGAAATTTTTTAATTATATGAACTACCCATTGTTCTAAATTATTGAATTTAAGATAAAATAGTTAAAAAAGAAAAAAGGGTATCTGAAAAAGAAGGAAAGTTTGGTAGAAGGTGTGTGAATGCATTTGCATTGATGATGATGATGATGATTGTGTTATTTGGCAATTGGGTACAGGAAATAGTGTTGTGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGGAAAGAGCAGAGAGAGAGATGAAGCAAATGGTGGGATCCCCTGCTTCTCCTCCTTCATCGACGGACACCATGTCCTTCAGCAGCCCACAGGAAGAGGCAAACGTGCCCTTGCCTCTGCCCTTGTTGCAGCATGTTCTTAAGAAAGAGTCTGAATCTGAAGAAACAATGGCATGTGTAGTGCCTAAACAAGAGAAAACAAGCAGCAGCAACAACAACAACAAAGGCAGTTGTGGGGCATCTTCCCTACAAATGCCCTTTGGGAAGGACAATCTTCCGGACCTGCAGCTTCCCATGTTGACAGATTGGACCCAAGATACCTTCTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTAACTCCTTCCAACATCTTAAACTTTTACTGA