Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12907 LG3 21328000 21330255 PREDICTED: scarecrow-like protein 23
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, bundle sheath cell fate specification, leaf development, leaf development, endodermal cell fate specification, regulation of transcription, DNA-templated, bundle sheath cell fate specification, endodermal cell fate specification, regulation of transcription, DNA-templated, bundle sheath cell fate specification, endodermal cell fate specification, regulation of transcription, DNA-templated, endodermal cell fate specification, endodermal cell fate specification, regulation of transcription, DNA-templated, endodermal cell fate specification, leaf development, endodermal cell fate specification, endodermal cell fate specification, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, bundle sheath cell fate specification, regulation of transcription, DNA-templated, leaf development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, sequence-specific DNA binding
SNP Position Effect Amino acid change
T/A 21328152 3_prime_UTR_variant
G/A 21328716 synonymous_variant p.Ile423Ile
T/G 21328760 missense_variant p.Asn409His
G/T 21328822 missense_variant p.Ala388Asp
G/A 21328902 synonymous_variant p.Thr361Thr
G/T 21328938 synonymous_variant p.Ile349Ile
G/A 21328944 synonymous_variant p.Cys347Cys
C/A 21328968 synonymous_variant p.Thr339Thr
G/A 21328971 synonymous_variant p.His338His
G/T 21328973 missense_variant p.His338Asn
G/A 21328980 synonymous_variant p.Leu335Leu
A/G 21328981 missense_variant p.Leu335Pro
G/T 21328982 missense_variant p.Leu335Ile
G/C 21328990 missense_variant p.Ala332Gly
C/T 21328994 missense_variant p.Gly331Ser
A/T 21328998 synonymous_variant p.Gly329Gly
A/G 21329001 synonymous_variant p.Asp328Asp
T/A 21329142 missense_variant p.Leu281Phe
A/G 21329223 synonymous_variant p.Ser254Ser
C/G 21329280 synonymous_variant p.Gly235Gly
G/C 21329313 synonymous_variant p.Gly224Gly
G/A 21329685 synonymous_variant p.Phe100Phe
C/T 21329753 missense_variant p.Val78Ile
G/A 21329761 missense_variant p.Ala75Val
C/A 21329762 missense_variant p.Ala75Ser
G/A 21329778 synonymous_variant p.Gly69Gly
G/A 21329790 synonymous_variant p.Leu65Leu
G/A 21329796 synonymous_variant p.Thr63Thr
G/A 21329797 missense_variant p.Thr63Ile
C/G 21329806 missense_variant p.Gly60Ala
G/A 21329811 synonymous_variant p.His58His
G/T 21329819 missense_variant p.Gln56Lys
G/A 21329821 missense_variant p.Pro55Leu
T/C 21329833 missense_variant p.Gln51Arg
G/A 21329838 synonymous_variant p.Asp49Asp
A/G 21329847 synonymous_variant p.Ala46Ala
G/A 21329857 missense_variant p.Ala43Val
C/T 21329891 missense_variant p.Asp32Asn
G/A 21329896 missense_variant p.Pro30Leu
A/G 21329904 synonymous_variant p.Ala27Ala
G/T 21329916 synonymous_variant p.Pro23Pro
C/T 21329953 missense_variant p.Arg11His
G/A 21329955 synonymous_variant p.Pro10Pro
G/A 21329957 missense_variant p.Pro10Ser
G/A 21329958 synonymous_variant p.Ser9Ser
G/A 21329963 stop_gained p.Arg8*
G/A 21329990 5_prime_UTR_variant
G/T 21329993 5_prime_UTR_variant
G/T 21330023 5_prime_UTR_variant
G/A 21330033 5_prime_UTR_variant
A/T 21330060 5_prime_UTR_variant
A/G 21330123 5_prime_UTR_variant
C/G 21330143 5_prime_UTR_variant
A/T 21330169 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12907.1
MLQSLVPRSPRTSNPNDMKTKRPVDTADSPADQPSFKRTNFSADTATEDDQAFDPQPHAGESTGLKLLGLLLQCAECVAMDKLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSSELLDSTGRRLADFASSLGLPFEFHPVEGKIGSVTELSQLGVRANEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWADELKRAGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD*


CDS Sequence:
>Vu_12907.1
ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGACATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAACCTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCTACCGAGGACGACCAGGCCTTCGATCCCCAGCCTCACGCCGGCGAGTCCACCGGCCTCAAACTTCTTGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGATAAACTCGACTTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTGTCTTCTCCGTTCGGTACCTCGCCGGAGCGCGTCGGGGCTTACTTCGCGCAGGCGCTGCAGGCGCGTGTGGTGAGCTCCTGCCTCGGCTCGTACTCTCCGCTGACCGCGAAATCTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTACAACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGCTATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCGATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCTCGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTCGGAGCTCCTCGACTCTACCGGCCGGAGACTCGCGGATTTCGCGAGCTCGCTTGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTGACCGAACTGAGTCAACTCGGCGTTCGAGCCAACGAGGCGATCGTGGTGCACTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAGGACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACAGCCTCGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGGAACATCGTGGCCGTGGGCGGGCCCAAGAGAACCGGTGAGGTTAAGGTGGAGCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCCGGGGCAACCCTGCTGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGGAGAGGTTATACGCTGGTCGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAAGGACCTTTCTCTGTTGATCGCCTCTGCTTGGCAGCCCTCTGATTTGATTACTTACCCCGATTGA


Promoter Sequence:
>Vu_12907::LG3:21330255-21332255(-)
AATCTCTTGTTCTTCTTTTTCGTTGCATTTGCAAAAAGTATAAATTGTGTTATGTACAAATTTTTTATTTAAATTAAAGTAAAAAGAAATCAGATTTAATCCACCAAAGTGACTTTTAGATCAAATTGAATTTACTTGTCGATACTCAAATGTACTTATTTTAGGGTATAGAGTCCATAATTTCACCTTTATACTTTAAACCTGTTATCCTTATTTTCTTTCTTTTGCAAAATCCAATTCCGAATAGTAAATACGTGTTAAAGATATTACGAGGTTTAAGTTAGTTTAAGTTAGTTTTTATTTACATGAACTGATTGGTCTGTGTACCGTATGATACCTGAATTCACCAACGGTCAACGAGTAACACGGACGACTGTTTGTCGAGCCTTCTTACGATTATAATGTCACGATCGTAGGAATGTCGAACACTTCTTAACGTCAATCGTCTGTTGATGTCGACACATTGGTGATCGACAAGCAAACAGCGATGTCGCGACACATAACACTCACAAGTTTGTGTCGATACACCAGGCGCTCGACAATCAGTGAGCGATTCCTAATTTAGCGGTTAGGAGTAAACGGTTACGAATATCAGTCAATGCCACGAATCACGGGAATAACTGACCCAGTATCAAACACGATCTAACAGTTACAACTTCCAAGTAGTCAACTTCGGTAACTGACCGGATTTTCAGGTAAACGGTTATTTTACTGTTTTAAATATGAAAAGCACAGAGGAAAAAAGGTACGTTTTTTCCTAGGGAGAGATTTTATGATTTTTCACTATTATTGAATGAGGAGAGTTCTACGATTCCCTTTTTTTCCTGACTTGAGCGTCGGAGTGCCTTCGCAGGTACCCAGCCCATTTTCCCCTCAAAGAGCTTAACACAGGAAGAGAGATATCACAGTATCAGCATCACAGGGAGAAGCAACAACGATTCGTTAGGTTCGTATCTCGGTCTCAACATCCATACTGAAACAGTCTGTATAATACAATACGGATTGGATAAAAAATAAGTATATATTAATTCTGAATGAAAAGAAGACACGTCTAAACGAGTGAAACTAAATCCTTAAAAAAAATGATATAATGTGAAAGATAGTAAACAGTAAAATGAAAGGGTAAAAATGTCAAATGCACAAATAAAAGAGTATAGAATATGGTTTAGAGACAAGAAAAGAGTTTCGTATTTGAAAGAAACAAAAGGTTTAAAATATTTATTGTGAGTATGAAAAAGAGATAAATAATAAATAATTATTTGCTTGACAGGAGTGATGTAGTTGAGAAAATGAAAGAGTTTTTCTTTGGACATGGAACTTCACTTATAACAATTATCATCACAGTAACAGTAGAATGAAATTAAAAAAAGAAGTGAAACGTGAGATATTTTATTTATATTAGATTCGGCAAGTTCATTAACAAAAATAAATGGATATTAAATGTAACCACTTTACTTTACTTTGTTATTTAAATTTATATTTATAAATTTTTGAATAAATTAATAATTTTATTTAGTTTAAGTTAATCATTATCAATTTTAATTATTATTTAAGAATAATCTCTCAGTACATCTTATCCAACCAACCGTATTTTATACGATATTTTTGACTGATCAGGCTTACAAATCACAATACAGTACATTAATATTTTTATTAAATGGAAGTCAACGAAGATAAAATATAAAAAAGGATAAGATTTAATATTGATTAATAAGAAGAATGTAATTTAGGTGACGGAAAAAAGAAAGATGGAATGCAAGTAGATAGAAGAATAAAAAAGGAACGGTGTTGATTAAAAGGAGAGATTTCATTTTCTGATGTCCTACGTAGGACATGAGACAATATTAATTTGATAAGTAAATAAAATAAAAGAAAGGCATGACGTGATTATGAAACTAATCATCCTTAATTAATCCCAAAGCTGCATGATTAGCGAGAGAGAATAATTAATGAGGGGAATTAGGGATATAAAACGGAGGTAAGGACAGATTGAAAAGAAA


Gene Sequence:
>Vu_12907(-)
ACGGAGGAACCAAAGAGGATAACATAACACCCAAGCCAAACTAACTTTTATGCCTGCAAAGTTATAACCCTTTCTGTCTCCTTTTATCTCTCTCTCTCTCTCTCTCTAAGATGGTTTATGCAATTCTCTCTCTAAAAAACCAAACACTCATATTCTGACACAGCCTCTACCTATCTGCTAAAACTTTCCTTGTCTTTCCCTCTCAGTTTTGTCACTTTTCCCCCAAAAGTTTCCTCCAAAGCTTTCGATTCTCTCTCGCTCTCCACCGATCATGCTTCAAAGCTTGGTCCCGCGATCCCCCCGCACTTCCAACCCTAACGACATGAAAACTAAGCGACCCGTTGACACCGCTGATTCTCCCGCCGATCAACCTTCTTTCAAGCGGACCAACTTCTCCGCCGATACTGCTACCGAGGACGACCAGGCCTTCGATCCCCAGCCTCACGCCGGCGAGTCCACCGGCCTCAAACTTCTTGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGATAAACTCGACTTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTGTCTTCTCCGTTCGGTACCTCGCCGGAGCGCGTCGGGGCTTACTTCGCGCAGGCGCTGCAGGCGCGTGTGGTGAGCTCCTGCCTCGGCTCGTACTCTCCGCTGACCGCGAAATCTGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCCTTCCAATCCTACAACTCGGTCTCGCCGCTGGTGAAGTTCTCTCACTTCACCGCGAACCAGGCTATCTTCCAGGCCCTGGAAGGGGAGGATCGCGTCCATATCATCGACCTCGATATCATGCAAGGTCTCCAATGGCCGGGATTGTTCCACATCCTTGCCTCTCGCTCGAAGAAGATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTCGGAGCTCCTCGACTCTACCGGCCGGAGACTCGCGGATTTCGCGAGCTCGCTTGGGCTACCGTTTGAGTTTCACCCGGTGGAGGGGAAAATCGGAAGCGTGACCGAACTGAGTCAACTCGGCGTTCGAGCCAACGAGGCGATCGTGGTGCACTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTAGACCTAAACTGATCACGACCGTCGAGCAGGACCTGAGCCACGCCGGGAGCTTCCTGGCGCGGTTCGTGGAGGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGATGGTTTGGGTGCGGACAGCCTCGAGAGGCACACGGTGGAGCAGCAGCTTTTGGGCTGCGAGATCAGGAACATCGTGGCCGTGGGCGGGCCCAAGAGAACCGGTGAGGTTAAGGTGGAGCGGTGGGCGGATGAGCTGAAACGGGCCGGGTTTCGGCCCGTTTCACTCCGGGGCAACCCTGCTGCACAAGCCAGTTTGTTGCTGGGAATGTTCCCTTGGAGAGGTTATACGCTGGTCGAAGAGAATGGTTCCTTGAAGCTTGGTTGGAAGGACCTTTCTCTGTTGATCGCCTCTGCTTGGCAGCCCTCTGATTTGATTACTTACCCCGATTGATTCCAATTCAAAACCCCCATTGTTCTTCTGAGGAAGCTGCCACCGTTGGTTCCTTCCATAATTCTTCTTTTTTATCATCTTCTGCTCCAACACTCCAATCCAACAACGGACATGGCTGGCTAGCAGAGAGGATAATCTCTTCTTAAGTTACTGAATTCAAAGTGATCGATCATTGCAAGTATCAACAAGTATGGTTTTGGAATTGGTTCCTTATATTAAATATTTATTAATTTATTTTTATCAATTGTTTAATTGATTCAGACTCCAAGGAGGAACAGAAGCCAGGGAAGTAATCGTTAGGGTTGGTTGTTTCTCCTATTAGATGGGAATGGAAGAGGGTATGTAATATTTTGTAATGGGGGGTGGGAAGTGATGGAGCGTTGTGTATAATAACAATAATAATCATAAGGGTGAGGTTGGCAATACCAAAGATGGGTCCTTTTTGTTTGTGACGTTTGAGAAGATGGAGGGTATGGTTTTAGGTTGAATTAGTAATGATAGCTTCAGTTGAATTAATAAGGTATGACGTTTGATCCACGTCTAATGGTTCCGTGGAGAATTTGGATGCAACAATTGAATGCATAGCAGAGGTATGGGGATGTGCCTATGCAAACAGAACAGACCCTACTCTAAGCAATAGAATATTTCTGCCTCTCTTCTTCCACCACTCA