Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12979	LG3	21975923	21978948	PREDICTED: transcription factor MYB39-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	response to abscisic acid, response to abscisic acid, response to water deprivation, response to water deprivation, response to water deprivation
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
G/T	21975930	missense_variant	p.Gly3Val
T/A	21976053	missense_variant	p.Leu44His
A/C	21976183	synonymous_variant	p.Gly87Gly
T/C	21976195	splice_region_variant&intron_variant
G/A	21976278	intron_variant
A/T	21976296	intron_variant
T/A	21976306	intron_variant
T/C	21976594	synonymous_variant	p.Cys174Cys
G/A	21976621	synonymous_variant	p.Leu183Leu
A/C	21976665	missense_variant	p.His198Pro
T/A	21976734	missense_variant	p.Phe221Tyr
G/T	21976838	missense_variant	p.Val256Phe
C/G	21976873	missense_variant	p.Phe267Leu
C/G	21976935	missense_variant	p.Pro288Arg
C/G	21976946	missense_variant	p.Leu292Val
T/A	21977656	intron_variant
G/A	21977814	intron_variant
A/T	21977848	intron_variant
G/A	21977865	intron_variant
T/C	21977976	intron_variant
A/G	21978021	intron_variant
A/G	21978030	intron_variant
T/C	21978036	intron_variant
T/C	21978037	intron_variant
T/C	21978059	intron_variant
A/C	21978348	intron_variant
A/G	21978367	intron_variant
G/A	21978405	intron_variant
C/A	21978419	intron_variant
G/A	21978438	intron_variant
G/C	21978482	intron_variant
G/A	21978922	missense_variant	p.Arg410His

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12979.1

MMGRAPCSDESGLKKGPWTPEEDNILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEQQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDQLNLLSSLQQLLTATNIFTNTLDINALRLQSDATELAKLQLLYNMLQVLVAGPASNLDLLNPFGSSLPDEILGLDQSKLQNLYNSSTGFLSQNQSNFFQSFEAPPQQQALPTGYNHMNGGSNRSCMKSEKVDEQLHVPYSFSTALDSLPNLVSATPECSTGKQMENMVNPNEFSDPSSTSTTFEMLGDFMYEEVTDAYWKDLIEIVGGCCRSSRASIFFDQLGRKSVIFCKGLRCGLPEFASLHCASTATSAGQPPLQFNLPSASFIGLNLTCGLQTPAVETSLAR*

CDS Sequence:
>Vu_12979.1

Promoter Sequence:
>Vu_12979::LG3:21973923-21975923(+)

GCATATTTTCTAAAAGTAATGATACGTTAACACAAATTTTTGACAATATTTTGATACCTTTGTATTTTTCCATTAAATTTAAAATATGTTATTAGTACAACAATAAATAAATAATAAACTAGTGAAAAAATATTACATTATATTAAAATATTGTAAAAAAAATCTGTATCATTTTTCCATTTTCTAATTACAGGAGATGTGCAGTACGCAATCTTGACTGCTTTCATTGTTACCTAATAACATTGAATAATTAGCCCTAGCTTCTATCATTTGTTTCTCTTTCAATCAATTTCATTCAAGACACACTTTACTTTTCATTTTTCATTCCCATTCACAACAATTTTATTAAATATAAAAATTATAAATTAATTTGTAGTCATGCATATATAAATGGCAATATACTATAATCACATTATATTATTAATACAAAATATTAGAGTTTCATGGACATTTATTTTTAGTATAAATTTTTTATATTGTTAATTTTTTCCATGACTTTATAAGTTAATTATTATAAACGTAAAGTAGCTTAATGCATGTTATTATTTAATGGCGGTATAATAATATTTATCTGACAAATGACTTCATTTATAAACGTGTTAGGCATTGTTAGGTAAAATTGATCTCCTAGACTATATGAGAATTAAATTTTTAATATAAATACTGATTGTGACTATGTATTAGTTGTATATAATGCATTTATATAGTTAAATTACTAGTATATGCTATTGTATGGCTAATATATATATAAACATGGATTCCCAAAATCATTAATTATTTCACTAAGTTAAACAAAGATTTCACTAATAGTTTGATTTTTCTTTTTCAAATAAAAAATTTAACAATCCTAACGATTTCAGATTTTTTTTTTCTTTATACATTATTCTTTTTTACATTGACACGAAATTATGTATTCGTTAGGGTTTTGTGGAGTACAGAAAAAACTGCATATATTTAATATTTAATTAGAGTACAAGATGAAACAATATAAATGGCATAGTTATGCTATATACATATATATATAGATGGTCGATATTTTGAGAGTGAGGTTTCTTTTCAATGTGGGACATGAAAAGTGAGGTTGAAAGTTGCTGAGAAGCTGCCACGTGGTTACCTACCCTCGTTGGTAGTTTAAGTTTGTTGCTTCCCTTCTTGGTGCAAAGTATATGGAGAAGGTGGCCATTGTCATACGTATGTGCCAGATTGTGCCTTGTTCTTGTTGGACAAGCCAAGCTCACGTTGAAAATTTCTGCATGTTTTATCCCTTTATTCCTCCATTTTCGTGTTTTCTGCATATATAAACAACGTGTCATGGAGTCAAATTTCACACTTGACGTGGCTAATCTCATGGATATGCTCCTCAATGTAACTAAGGAAAAGACAAACTAAAGCAAAGAAGAACATGCTATTAATGCAGTTTTTAATAAATGCGTACCCTATTATGTTTTCCTCCATTTTTGAAAAAGTTAATAATAACTGATATAAATATGAAACTTTCCTTTTCAGTTAGACTGCTGATGCAAATTATCAGTTTTTAAAAATGGATGAAAAAACTAAAATGGGTCGTCAAAGGAAAAGCATTTGCATAAACTGTTTGATAAAAAAATGAAAATCTATGACTGGCTAATCATGTTTGCGTCTACCCTTTGAAATCACAAACACTACAATTAGAAGCAACATTACTCTAAGGAGTGTCTTTCGATGCTCTTTTTCAGGGTCGTTATCTTATCTTTGTTTATGTACAACACGGGACAAACTTGTAAATTTCTACCACAGCATAGTAAACAAGCTTTGAAACATGTTCTATATTATATACATATGTTTATATATATAGATAGATAACAATCATGTCTCTGGTAACTTCCAATAGGTCTATGTACTTTCATTACTCGATCCAACAAGGTTTGGATTTTTTTGCTCTGACTGGTTTTGAAGGAAACTAACACAGAAGGAAATGAGTTCTTATACTGTTTTATTCTCAACATTTTTATGCAGTGTGA

Gene Sequence:

>Vu_12979(+)

ATGATGGGGAGAGCACCATGCAGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACCCCAGAAGAGGATAATATATTGGTGGATTACATTCAGAAACATGGGCATGGAAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGGAAAAGTTGTAGGCTAAGGTGGACAAACTACTTGAGACCTGATATCAAAAGAGGAAAGTTCTCTGAGGAAGAACAGCAACTCATCATCAATTTACATGCAGTTCTTGGAAATAAGTAAATTACTATTCATTTAGTCTCATTTGATGCATAATCAGAATGAAACATGCTTTGGTAGATCTATGTAACTATGTTTACTTTTTCATGGTACTTTACAGATAATAAACTGATGTTTTTTTGTCTGTGTGCGTTATTTCCATGGTTAGGTGGTCAGCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTGGATCCAGTGACTCATCGTCCAAGATCAGATCAGCTTAATCTTCTATCCAGTCTTCAACAGTTGCTGACTGCTACAAACATTTTCACAAACACTTTGGACATTAATGCTCTAAGGCTGCAATCAGATGCCACAGAACTAGCCAAACTCCAATTGCTGTATAACATGCTTCAAGTCCTTGTGGCTGGTCCTGCCTCAAACTTGGACCTGCTCAATCCTTTTGGATCATCACTGCCAGATGAAATTTTGGGATTGGATCAGTCCAAGCTCCAAAACCTTTACAATAGTTCAACTGGTTTTCTTTCTCAGAATCAGTCAAACTTTTTTCAAAGCTTTGAAGCTCCTCCTCAGCAGCAAGCTCTACCAACTGGGTATAACCACATGAATGGAGGAAGCAACAGGAGTTGCATGAAATCTGAAAAGGTCGATGAACAACTTCATGTCCCTTATTCATTTTCAACAGCATTAGATTCTCTTCCAAATCTGGTTTCAGCCACACCCGAATGTTCAACTGGCAAACAAATGGAAAACATGGTAAACCCAAATGAATTTTCTGACCCTTCTTCCACTTCAACCACCTTTGAAATGTTGGGAGATTTCATGTATGAGGAAGTAACTGATGCTTATTGGAAAGATCTCATAGAGTAAGTAACTTTTGTGTCACGATTTTTATATTATTGCACTATTCTTTTAGCTCCACTTGTGCTTATTTTATACTTTCTCTTCTAAATTCATTTATTATACTGATTTTTTCATACCTATATTTGCAGCCAAGATTGTAACCTGTAGCAGACAACTGCGATAATAGGAATTATCATTGATCTCTGTGATCAACACATGGTGTTCATTTAGAAATAGTTGTTTGGTTCCTATGAAATTGAAGATGGATTCATCTTTATACAAGGTTCCATTGTATCGTAGATAAGTTCATGCAGCATGCAGATTGTAATTTATTTTGTAGTATATATATATATATATATATATATGTATGTATGTATGTATACCTTCTTTCTTGAACAATATTATTTGTGATGAATGGAAGAGTCATTATGCTTTGAATGGTTGAAAATGAAACAAATTTAAAGTCAGAAGTAAGGGTGGCAGATTGCTGTTTATGACGTGAGGCATCAACTTTTTCTTAAAGTCTTTTCTATTTGTATGATTATATTATCATGTGTTTACAAAACTATAAAAGAATTATATACTTTGCAAAAAAAAAAATTAATATTTAAATGTTAAAATAAGTATTTAACTTAATTTTGTAAGTCTCTTCATTTCATATATTAATATTTAAAATTTTTAGTTCATTATAATTTTTGCATTGAATTTTATTGTTTCCCATATTTGCGAGAGGCGGAACAGTAAAACAGAGAAAAGAGGAAGAAGACGTATGATTCTGCATGAAACTCTTCTATTACTGTATATATTCAGCCTAATATCATACGTAAGCTTAATCATCTTTTCATCTTTAATTAAGTTTTCCTCTAAGTCATCTAATTGCACTAAAGATAATAATTATAGCTAATTCTAATGGTTTCTTATATTTAAATTTAAAGTTACCTTTTCTAATCTCTTATTTGTTCAGTATTACCGCCATTAAATTCCACAATTAGAAAAATTATCATTAATTCAAAAAAATCGTTTTAACTTGATTCCTGTTTCCGACTAATACCTTGAAATCTTTTAGAAAAATAATCACTTTATTTAATTCTCTAATGGTAATTACATTTTAATTAAAAATCTTTATCTTAATTATTGTTTTGAATTTCCACAACGACAAAAAATAATTAATTTTGTAGAAATAATTTTGTGATGATTTCATCTTTTTACTCTTATGTAATTGTATTTTCATAAAAAATATAATTTTTTTTCTTCCTAAACCTTCCAAACAAAATCCAGATAAATCAAAGCTTATTCGTTCTAAATTACTTCAGGAAAAGGGTTACCTACCGGCGGAATATTACCGACGGGCTAACTATTCCGCCGGGCTTAACACACCTTCGGTGATGCTTTGGTGAAATAAATGACCGACGGCTCTTGACCGTCCGTAATATCTTCGATGATTTAGGCTCAAGATGAGAGTATTCCCTCTCACATTTTCATTTTGCACGAAAATCCTTATTCCCTCAACCCCTTCTCTGATTTCCCCAATCTCAGAATCCTCACACTCATCTTCTCCAAGGATCGTAGGTGGTTGCTGCCGGAGTTCACGTGCCTCCATTTTCTTTGATCAATTAGGGCGAAAGTCAGGTATTTCCTCTCACATTTTCATTTCGCACGAGAACCCTAATCCCTTCGTTTTGTGATTTCCCCAATCTGATAACCCTGGCAGTGATCTTCTGCAAGGGCCTTAGGTGTGGGTTGCCGGAGTTCGCCTCCCTCCATTGTGCTTCAACCGCGACGTCAGCTGGACAACCGCCATTGCAGTTCAATCTCCCCTCCGCAAGCTTCATTGGGCTTAATCTCACTTGCGGTTTACAGACTCCCGCTGTCGAGACTTCACTCGCGAGGTAA