Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13035	LG3	22420279	22422051	PREDICTED: serine/threonine-protein kinase-like protein At3g51990	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	response to water deprivation, phosphorylation, protein phosphorylation, response to abscisic acid, root morphogenesis, root morphogenesis, protein phosphorylation, protein phosphorylation, developmental growth, response to abscisic acid, phosphorylation, response to water deprivation, tissue development, response to water deprivation
Cellular Component	is active in	plasma membrane
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
T/A,*	22420345	missense_variant	p.Ser23Thr
T/A	22420457	missense_variant	p.Leu60His
G/A	22420508	missense_variant	p.Arg77His
C/T	22420548	synonymous_variant	p.His90His
C/T	22421118	synonymous_variant	p.Ala280Ala
T/C	22421235	synonymous_variant	p.Ser319Ser
C/T	22421287	synonymous_variant	p.Leu337Leu
G/A	22421347	missense_variant	p.Glu357Lys
A/G	22421439	synonymous_variant	p.Gly387Gly

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13035.1

MGYLYLSCRAESAVSTSDSVASSKATGEKDKEKERSGIKIQEFQYRDLEAATNGFSDRKLLGKGSHGYVYKAVVRGRPVAVKRPSRPHHHGVVPRPVSSSAPLEITNEVDNEIDILSKIQSPRLVNLVGFTNDSRDRLLVVEFMSNGTLYDVLHSSPRPPNWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRSYNARLGDFGLALRGHVDDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWAIPLIKKGKLLAVYDPRIAPPKDPVVRKQLAVIAAKCVRSCRERRPSMKEVVTWLCGLCKLVPLHSWNGFNNPCMMVETVGRPVEARNGEFNSRLAGVEEGNIEALDGRLSKSAMRSS*

CDS Sequence:
>Vu_13035.1

Promoter Sequence:
>Vu_13035::LG3:22418279-22420279(+)

TATTAATGTATTGTCTAATAACAACCTAATAAAATCAATATGATCAACAAACAATAAATTTCGTTATGATAGACTCTAAATCATGATTTTGATGTTAGAAGTGAACTTCAAATCTAATTTAATTATATAAGATTAATTTGTAAAGTGGAATTTACATTTTATATATATATATATATTCTAAATTAGATCTACCATTAATTAATGTGAGATTTCTAACATAAAGTCGTGTAAAATGCATTTTATGTGTAGTTATGCCAACTACACATACAAAATTATATTATAATTCATTGTTGAACTCTATCTTAAAATAAAGATAATTTATGTACTTTTTGTTTAAAAAAAATATTTTAAATGTATATAATTTTGTTTGAAGAAAAGGAATTTTTTTAAATGATTTAGAAACGGAAAACAATTTAATCTATAATTATTTAACCTAAAAATTTTAAAAATTGGAATGGAAGATAATGACTTTGAGACTTTGTGAGATTGTCTTGTATTATCTAAAAACAAGTGAATCATGTAGTGTTAAAGAGATTTTATTGCCATCCTACTTCATAGTAGAGATATTCTATTGATTTGGTCTAAGTTTTTCTTCTTATTCTTGCATAAAAGAGGTTGTGTAAGTTAAAATTAATTTCTTATTCTCTACTTATTATTTTCTTGATCTCATTTTAAGTTATATAGATGAAGAAAAACTTTTCAATTGCGAAGATTTTCTAATACTCTCGCTACATTCAATTGTAACATCTTTAAATTATAAATTCCACCCAAATGTTTAAATTAAGGTTGAAGTAATTCATAAGAAGGACAGCTTGTCATTAGATTTAAGAAACATAGTTGGTTGGTGAGAATTAAGATATATATATGATTAAATTGGTTTTTATTTATAAATTTAAATTGCGAAATTTAAATTGGTTTTTATTTATAAATTTATGATTAACACGTTTGAGAAATCAATAAATTTGTCTGAAGGTGACCCTGGGTCATATATTATGATTTTGAGTAAATTTTTAACAGACGTTAGACATCATATCACAGATAAATTAATAAACTAATTAATGTTTTTAAGAAACAATTTATTTGGTGTTATTAAGTTATAAATTTCATATTAAAATATACGAGTCTCTACAAGTGTTAGAAACAAGTAGCTTATTAAATAAAAGAAACCGATGTCTTAATAAATAAGTAAACAAAACGTTTGAAAATAACGTGTTCAAGAATTATTGATAATTATTTTTTCTACGTTATCAGCAAAAAATAAATTAAATCTCAGTAAATTGAATATGTTTTTTCCTATTGTATTGGCTGGAAAATGAAAGAAAAAATAAAAAAAAGTTGAAGTACATCACATGTGAAGGCAACCCGTGAGTTTTCTTAATTGGTATGACCCAATTTAAGGGCACACCAAACCTTGATGAACAAACAACGATACAAACACCAAAATCATCTCATTTTCCTTTCTGTACTTTCTGGAAGAGAAACGTGAGATGTACGTTAATTTTGTACAATATTTTATCTGTATAAAAAACTATATGTTAAAATAAATAACCATATTATTATTATTTTATGAATAAATAAATGATGGACCTTGAGATTCTTGCAAGGGGTGGGTGGTGGGTCCCTACTTTCTCTTTTTCTCTGTCTAATTTTTAGAGAGAGACACATTCACATCTTCCAAGATACACACAGAGCATTTAATTTTAATAATAAATGATGAACGTTTGCACATTTTTGCAATCCCATAATAAACACAACAGACATAAACAAACGTATTCTGATGCTACTATTGATTTTTGGAACACTCAGGAAGACATTAATCTGTTGCGCTGAATCTTTTCTCTGCTTTTTTGTTGGGGTTGGTTTCTTCTATCTATCTATCTATCTATCATCTTCTTCTGGTTCATTTCCATCTCCATCTCCATCTCCACTCCCACTTCACTCCCTTTGGTTCCTTCTTCGGTTCAGATATTCCAAAAGGGTAGACACAAACGCAATTCATA

Gene Sequence:

>Vu_13035(+)

ATGGGGTATCTATACCTTTCTTGCAGAGCCGAATCCGCAGTTTCAACTTCCGATTCGGTGGCTTCTTCCAAAGCTACCGGAGAGAAAGATAAAGAGAAAGAGAGAAGCGGCATCAAGATCCAGGAGTTTCAGTACAGGGACCTCGAGGCTGCTACCAATGGCTTCTCCGACCGCAAGCTTCTCGGCAAAGGGAGTCACGGTTATGTCTACAAGGCGGTGGTTCGGGGCCGTCCCGTGGCGGTGAAGCGGCCGTCGCGGCCGCATCATCACGGGGTTGTTCCTCGGCCGGTGTCTTCTTCCGCGCCGCTGGAGATCACGAACGAGGTGGACAATGAGATCGACATCTTGTCGAAAATCCAGAGCCCCAGGTTGGTGAATTTGGTGGGTTTCACGAACGATTCAAGAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAATGGCACCCTTTACGATGTTCTTCATTCCTCTCCGAGGCCTCCCAATTGGGGTAGGAGGATTCGTTTGGCTCTGCAAACTGCTAAAGCCATTGACACGCTTCACTCCTCGACCCCTCCTGTGATTCACCGTGACATAAAGTCTGCGAACGTTCTCATCGACCGCAGCTACAATGCGAGATTGGGGGATTTTGGTTTGGCTTTGAGAGGCCATGTTGATGACTACAGACTCAGGTCCACTCCCCCTGCAGGCACCATGGGCTATCTTGACCCTTGTTATGTAACTCCTGATAATCTGAGCACCAAAACTGATGTTTTCAGCTTTGGGATTTTGCTGCTGGAGATTATAAGCGGAAGGAAGGCCATTGACATCACTTATTCACCACCTTCTATCGTGGATTGGGCCATTCCTCTCATCAAGAAAGGGAAGCTTTTGGCTGTTTATGATCCCAGAATTGCACCTCCCAAGGATCCGGTTGTGAGGAAGCAGTTGGCTGTGATTGCTGCCAAGTGTGTGAGGTCTTGCAGGGAGAGGAGACCTTCCATGAAGGAGGTTGTTACTTGGCTCTGTGGGCTGTGTAAACTGGTGCCTCTTCATTCTTGGAATGGTTTTAACAACCCTTGCATGATGGTTGAGACTGTGGGGCGCCCTGTTGAAGCAAGAAATGGTGAATTCAATTCTAGGCTGGCAGGTGTGGAAGAGGGAAATATTGAAGCTTTGGATGGAAGACTTTCCAAGTCTGCAATGAGGTATTCCAGGAGGGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGACTTGATGGCTACCACTGAGGAGCCTGAATTTCTGAGAGATGCTGATGGGATGGATCATAGTTCTAAATCTGCTGAACAAGTTTCTAGCTCCAGGTTTGGCAGTGGAAGGTATTCCATAAGAGGGAGGAACCTATACAGGCCATGTGGCAGTGACAAGGACGCCTTTGGCTTCAGTAAAGGTCGGATTGTAGGTCAGACTGAGACCACTTCAAAACAGGACGAGGTTTCTGGTTCAAATTCGAAGAATTTGAATTCTCTGGTTGCTGAGGTTGTCTAGTTAATTAACTGCTGAAACATTTTATTGGATGATGATGATGATGATGATGCCAGGCTTGTGAGCTTTTCTTGCTTGCAAAATTGTGTAGATTTGTTGTTAGTTCATTATTTGTGGATTTCAGAAATGATCTCTTCAGTTTTAGTAGGTTTTTGGGTTGAAGGGCGCATTACTGATGTCCCCTTAACGTTGTTCAAAAAGCTTTTGTTTCCTCCTCATAAACAAATGCAAAAGCCACTGTATGAATGATTCAGGAGCTCATGA