Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13134	LG3	23133976	23136033	PREDICTED: serine/threonine-protein kinase-like protein CCR4	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, defense response to fungus, defense response to bacterium, response to molecule of bacterial origin, systemic acquired resistance, response to osmotic stress, response to water, defense response to bacterium, immune system process, systemic acquired resistance, defense response to bacterium, response to water, response to molecule of bacterial origin, systemic acquired resistance, regulation of defense response, response to salicylic acid, response to molecule of bacterial origin, response to chitin, defense response to fungus, protein phosphorylation, defense response to fungus, response to osmotic stress, protein phosphorylation
Cellular Component	located in	extracellular region
Molecular Function	enables	kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein kinase activity, protein homodimerization activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity

SNP	Position	Effect	Amino acid change
C/T	23134213	synonymous_variant	p.Val607Val
G/T	23134707	missense_variant	p.Leu443Met
G/A	23134716	missense_variant	p.His440Tyr
G/C	23135739	missense_variant	p.Leu99Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13134.1

MGCWRFSANATNVPYKRIYDGPLLQDIDSSHSHVCGLVNNGSSSLKLECWQWHDFNSSSGSVRNMSMSSMAVGENFVCGLSPTGDVNCTGTGRVSSSRLVVDVPAPGGNYSFLAAGFRHACVISGDGGLVCWGDMEGEKPQGRFVSMALGENRSCALGHDRRVVCWGSDNFTMPTTLQDTFFESIVAEKSVFCGVVSSNFSLLCWGSPFFESDSKVFEDVLPGPCRKNCPCGPLPNSAKLCQSPDVICQPCYPQVVQSSSPPPSPPPSPSPSQPSLPSNHSRWSSRMVAFLVVGCVGCSSLLLVIAFFLHRYCKSKRRGSRVHDSGRLDESSHSQPQPDAEAGSRVLQKRLSHVISMGNGSPLEEFSLGTLLQVTNNFSEEKRVGVGSFGSVYRATLEDGKEVAIKRAEASSSTYTVLGAQVDKDNAFMNELESLSRLHHKNLVRLVGFYEDTKERILVYEYMDNGSLGDHLHKLQTSALMSWPVRIKVALDAARGIEYLHQYATPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGYRAIHKNENGVPRNVVDFVVPFIYQDEIHRVLDKRVPPPTPFEIEAVAFVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAQPTLSRSTTYSSSH*

CDS Sequence:
>Vu_13134.1

ATGGGGTGCTGGAGATTCTCTGCCAATGCTACTAATGTTCCCTATAAGCGCATCTACGATGGACCCCTTCTCCAAGATATTGACAGTAGCCACTCCCACGTTTGCGGTCTTGTAAATAATGGTAGTAGTAGCCTTAAGCTTGAGTGTTGGCAATGGCACGACTTCAATTCGAGCAGTGGGAGTGTGAGGAACATGTCAATGTCAAGCATGGCCGTGGGAGAGAATTTTGTGTGTGGCTTATCACCGACGGGGGATGTTAATTGCACAGGCACGGGGAGGGTTAGTAGTAGTAGACTTGTTGTTGATGTTCCTGCGCCCGGCGGGAATTACAGTTTTCTCGCAGCTGGCTTTAGGCATGCCTGTGTTATCTCCGGTGATGGTGGTTTGGTTTGTTGGGGAGACATGGAAGGTGAGAAGCCTCAAGGGAGGTTCGTTTCTATGGCGTTGGGAGAGAACCGTAGCTGCGCACTCGGACATGACAGAAGAGTTGTCTGTTGGGGGTCCGATAATTTCACCATGCCGACCACCTTGCAAGACACTTTTTTTGAGTCAATCGTGGCAGAGAAAAGCGTTTTCTGTGGTGTTGTATCTTCCAATTTTTCCTTGCTCTGTTGGGGTTCTCCATTTTTTGAATCAGACAGCAAGGTGTTTGAAGATGTCCTCCCTGGACCTTGTCGGAAAAATTGCCCTTGTGGGCCCTTGCCCAACTCTGCCAAACTATGTCAGTCTCCAGACGTCATTTGCCAACCCTGTTACCCTCAAGTGGTTCAGTCTTCGTCTCCACCTCCATCTCCACCTCCATCACCATCACCATCACAGCCATCGCTACCATCAAATCACTCTCGTTGGAGCAGCCGAATGGTTGCATTTCTTGTGGTTGGATGTGTGGGGTGCAGTTCCCTGTTGCTAGTCATAGCTTTCTTCCTTCACAGGTACTGCAAGTCTAAACGCAGAGGAAGCCGTGTCCATGATTCTGGCCGGTTGGATGAGTCATCCCACTCTCAACCACAACCTGACGCTGAAGCTGGATCTCGTGTTCTTCAGAAGCGCTTGAGTCACGTGATCAGCATGGGAAATGGGAGCCCTTTGGAGGAGTTTTCTCTGGGGACACTGCTTCAAGTCACTAACAATTTCTCTGAGGAGAAGAGAGTTGGAGTTGGCAGCTTCGGTTCAGTGTATCGTGCCACTTTGGAGGACGGCAAGGAGGTTGCTATAAAAAGAGCCGAAGCTTCATCCTCCACCTACACAGTCTTGGGTGCCCAAGTGGACAAAGACAATGCTTTCATGAATGAGCTAGAATCTCTCTCCAGACTCCACCACAAGAACCTGGTCCGCTTGGTGGGGTTCTACGAAGACACTAAAGAACGCATTTTGGTGTATGAGTACATGGACAATGGGAGCCTCGGTGACCATCTCCACAAGCTCCAAACTTCAGCTCTAATGTCATGGCCGGTGCGCATCAAGGTGGCTCTGGATGCTGCCAGAGGCATAGAGTACTTACACCAATACGCCACTCCTCCGATCATTCACCGTGACATCAAGTCTGCAAACATATTATTGGATGCCAAGTGGACTGCCAAAGTCTCTGATTTTGGACTCTCCCTAATGGGACCTGATCCTGAAGATGAGGAGGCTCACCTTTCACTTCTAGCAGCTGGCACTGTTGGCTACATGGACCCTGAATACTACAGGCTTCAACATTTGACCCCCAAGAGTGACGTCTACAGCTTTGGAGTGGTTTTGCTGGAGTTGCTCTCAGGATACAGGGCCATCCATAAAAACGAGAATGGGGTGCCAAGAAATGTGGTTGATTTTGTAGTGCCATTCATTTATCAAGATGAGATTCACAGAGTGTTGGACAAAAGAGTGCCCCCTCCCACGCCGTTTGAGATAGAGGCTGTGGCGTTTGTCGGTTATTTGGCAGCAGATTGTGTCAGGCTGGAAGGTCGTGACAGACCAACGATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCACAACCTACACTCTCTAGGTCCACCACATACTCTTCTTCGCATTAG

Promoter Sequence:
>Vu_13134::LG3:23136033-23138033(-)

CGTCTTATTAAAGATGAGAATAAAAGTTTTTTAGATGATATTAAAATTATTTAAAATTTATCTTATTAATTTTTATTAGGTTTACCGTCTTTCATTATTAGGTTTTCTTTATTAGATTTATTTAGTTCAATTTAAAGTTCTTATTAGTTATACATTTGAGATATATGGTTTTTGGTGTAAAAAGGATGCCTTAAAGATCTTAAATCACTAGAGATAAAGTCAACATAAATCTTATTTTATTAAGTCAAATTGTAAGATTAAATTTCACGTTTTTAAGATATAATATATATATATAAAATATTGTGGGATGATGGTTTAAATATTTAATTATATATCTAATACTGGACTTATATGATAAGACTTGTAAATTGTGTTTAATTATTCTAATAAATCATATACATATTCAAATTATTATAAATAAGTAATATAATTTTTTTGCCATATTAAAATTGCAAAAGTAGAAATTATTTGCTTTTAACGTGATAGAGAATCCAAAATTTAAAATGCTTCTAGAGACAAAAACATATAATTAACCTTTTTTTAAAAATTTGTTATTCTCAACCATTGTTTATTTTAAGTAGTACCATTTGTCGAAAGCAATTTCTATTGGAATAAATGTAAACAAACTTAAACCCTTGTGTTATTTTAAAATAAATTTTCTATATGAAAGTTCCTTCCTATATCAAGTTATTAGAACAAATTTTAAATTTGACCAGAGATTTTGTTGGTTCGTATTGTTGATGAATCTTTGACTTTGAGGTATATAACAAGAATTTGCCTGTTGAATGATTTGATATCTTCTTAACAAACCTTTTTAATAATCTTTCTAATTACTGGTCACCATGTGTATTATTGTTAGCTTTGCTTACTTCCATATAAGTTTGGTTTGGCTGAAAGGTCAGATATATTAGTTATTTGTATATCTTAGAATTACCGAGTAATAACATTATTTGGTTGAAAGGTTAGAGATAAAAGTCATAATCCCTTACTCATCAAATTATCATAAACATGTTCGGTTTATTGCTTCTTTACAAGAAAGTTTATTAGAGAAACACGGACACCAATAAAATATAAAGTGAATCATACAAGAGATTGACAATACTATTTTCTGTATCTAAATAAATTATTAAATCTTTCATATTTATATAATATTTTACTTTCTTATGTTTTTCATTTGGTATACAACTTAAACTTACACTCGTCGTGTTAAAAAATATTACAGTTTCTAGTTCATAGCCCAGTAAGAATGGTACCATTTGAGTAATGAATTAGTATAATGTGAAGTGATGCTATGTGAATTTGTTCTTATCCTTGTTAACCAAATTGCATTGAGAAAAAGAAACTACGTAGCAGTGATCCATCAAATTTATGTTATTATAATATAATTGTCAAGTAATTATTTTAATTATAAAAAGAAATATCTTTTTTCAGTGAAATGACCAAGTAGCATATAATATGGAGAAGGAAAACCGAGTCAGAGAACATAGATATGTAGACTCGGTCATGCATAGGTTGCTGAGTCCTAAAAACGACAGTGTTGTTTCTGTGTCTGAGTGTGACTATTGTGAAACCGCGTATAGCGTTTTGCCATTCTCCTTCTCATAAAAACCTCTTCTCACTTCCATTCTCTAATCACACTAATAGCTTCACCATGAAATTAATGAATTCTTTTACTATTCATTTACAATTCCATGGCAGCTTTACTCCTTAATCGCTCCTTCTTCTGCCACCTATTCCTTTTCCTTTTTTGTTGTATTCCATCTATAAACACACTCTCCACTGTTTCCATTTCTCAAACCCCCCATTCAAACCAAACATTTATTTGCGTCTTGCAACATCCAAATCAACAAGGACAATCAAATCTCAACTGTACTACCTTTCCTCGGACTCAGACTCCGCCTTTTACGCTTGATGTCAATCCTAACGTTACCTACTCTCAGATTGTGGGCGGCAACGGCTTTGTATGTGCTTTGGGGCCATCGTCTTCTTCCATCTCCATC

Gene Sequence:

>Vu_13134(-)