Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13147	LG3	23221076	23224321	PREDICTED: transcription factor bHLH122-like isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription by RNA polymerase II, cuticle development, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cuticle development, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein dimerization activity, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific

SNP	Position	Effect	Amino acid change
C/A	23221334	missense_variant	p.Pro82Thr
A/C	23221715	missense_variant	p.Lys183Asn
A/G	23221723	missense_variant	p.His186Arg
C/A	23222188	3_prime_UTR_variant
G/A	23222579	3_prime_UTR_variant
G/T	23223633	splice_donor_variant&intron_variant
T/C	23223643	missense_variant	p.Phe178Ser
A/T	23223668	stop_lost	p.Ter186Tyrext*?

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13147.2

MQPKSAARLPSFRSIPASWLESVLLKEEEEQEEEEEEQEEIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKLLQKQIETLETLQELTEHQRRCRCMVQE*

>Vu_13147.1

MQPKSAARLPSFRSIPASWLESVLLKEEEEQEEEEEEQEEIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKICWMRR*

>Vu_13147.5

MQPKSAARLPSFRSIPASWLESVLLKEEEEQEEEEEEQEEIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKVLFPSYLNIIISFLNPLSAACISPFTQLIGRKPKHPPK*

>Vu_13147.4

MQPKSAARLPSFRSIPASWLESVLLKEEEEQEEEEEEQEEIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKLLQKQIEVHFFVWLHISL*

>Vu_13147.3

MQPKSAARLPSFRSIPASWLESVLLKEEEEQEEEEEEQEEIQQAEEEPLTFTQLLSTIAAPSPSQRYDTQDYPPTTMSMSIPNSIAPKELYASAPHLKVDNMFTFEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKLLQKQIEELTEHQRRCRCMVQE*

CDS Sequence:
>Vu_13147.2

ATGCAACCCAAATCCGCCGCCAGACTGCCCAGCTTCCGCTCTATTCCGGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGAAGAACAAGAAGAAGAAGAGGAGGAACAAGAAGAAATCCAACAAGCTGAAGAAGAGCCCTTGACCTTTACCCAGCTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAGGATTACCCTCCCACCACCATGTCCATGTCCATCCCCAATTCAATCGCACCCAAGGAACTTTATGCTTCTGCCCCCCACCTCAAAGTGGACAACATGTTCACGTTTGAGGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAACACTGCAGATATGTTGGATGAGGCGGTAGCATATGTCAAGCTTCTACAAAAGCAAATTGAGACTCTTGAAACACTGCAGGAACTGACAGAGCACCAACGGAGGTGCAGATGTATGGTTCAAGAATAA

>Vu_13147.1

>Vu_13147.5

ATGCAACCCAAATCCGCCGCCAGACTGCCCAGCTTCCGCTCTATTCCGGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGAAGAACAAGAAGAAGAAGAGGAGGAACAAGAAGAAATCCAACAAGCTGAAGAAGAGCCCTTGACCTTTACCCAGCTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAGGATTACCCTCCCACCACCATGTCCATGTCCATCCCCAATTCAATCGCACCCAAGGAACTTTATGCTTCTGCCCCCCACCTCAAAGTGGACAACATGTTCACGTTTGAGGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGGTTCTATTTCCGTCTTATCTTAACATCATTATTTCATTTTTAAACCCCTTATCTGCTGCATGTATTTCACCATTCACACAGCTTATAGGAAGAAAACCCAAGCATCCTCCAAAATAA

>Vu_13147.4

>Vu_13147.3

Promoter Sequence:
>Vu_13147::LG3:23219076-23221076(+)

GAAATTCAAAACAAATAAATAAGAGTATAAAATATGCAATAAAAATAAAAGTATTTTAAAAATATTCATATATTTATTTGTATGATAATTGAAAACTCTAATTATATTCACTAACTAATACTTGGGAATTATTACAATTAATAAAGCCTGTTAAATAGTCCTAACTCATAAGAAAAAGTTGACCGTCTGTATAATGAATAACATTTGGAATTGATGAGCATGAAACTGTATGCTCAAGATAGTCAAAATTCCGATCGTTGTACACCTAAGATGTTACTGTCAATGATAACTACATTCCAATCATTTCATTACTTTCACTTATATTTTAATGATAAGATAATATAACTTTTAAGGATTAAGATATTTTTTTTACTATTTATGTTATGGATGAGTACTTAGAGGGAAAAATGATTTAGATCATTGCTCATTATTTTAATGATTTATTTATTACATGATTACAATAAAACTAATTAACTTGTTATTCTATTAATTTAGATATTCACTTGTTTTTTATTTTAACTGTTAAATTTAGTAATGAATATAAATTACTGAAATTTATTAAGCATGACAGTTAATTTTAAATAAAATGAGATTCAAATAAGAAACAGCATATATCCTAGCATATGATGATAAAATTCGAATTCAAGAAGTTAAGTACAGGTGTCAACAGAGCCTAATTAGAGTCATTTGGGCTGACTGACTGATGAGCTCCGAGCCCAGTCAGAAATGATTTAAATGAAATAAAACCAAATATATTGGGAAGAATCATTACTATCATCAACTAAACTATTAAGAAGTGGGGTTTGTGAATATGAACAAATGGCGAATTGAAAGGTAGAAAAATAATAGGGTTTAGTGGGTGGTTTTGTAATAATTTGTTTTAACACATCTTATTATTAAATAAAAAATAAAAAAATGAACAGGAGTGAGTGACCAGAATGTAGACGAGGGAAGCGAGTACGATGGTCCGGTAGCGGCCGAGACGAGAATCTGCAAGAAAAGCCCCGGCGAGAGGAAGCAAGGAAGCAGTTCCCGACCAAACGTTGACGTTCTCTGCGGCGGCGGCGGTGCTCTGATGAAGAGGCCCCGTGAGATACGATATCATGTTCCCCTGAATCCCGTAATACGCAATCCTCTCCGCCACTTCCACGCCTGATTCCATTTTCACACATGTTACGCTCCTTCTTAATTCAACTATAATCAATCACTGCCTTACCTTACCTATGATAAACCAAGCGGATCTCCACGACCCAGATTTGGATCTTACGGCGCATCCACCTCTGTAGTCAACCGCACCAACCACCACATCGTCCCTCTCCTCCTCCTCTTCTGCTACCACTACTGCTTCTTCCAACTCATTCCCCATCCTACTAATCTCTTAACCTTACTTTCTCACCCTTTTCTTCTCCCCTCTTCCTAATAAATACCACTCTCTCTCTTCTACACCTCTTCCAATTTATCACCCTCAATAAAAATAATCTAATTCATTTTAGTCTAAAATACCTAATCATTCCGATAACAAAGACAAAAAAAATATTGAAAGACAAATAATTGATTAAAAAATATATATTTGTCTTCTTTTCATAATTGATTAAAACAATAAATAGAAATGCAAGGGCAAAGTTCAATTTTTGTTTGGTATGGCAACTGAAGTACACATCTATCTGTTTGAGAACAAACCTGAATCAACGAAGTTATCTTGTGGGGGCAGTGGATATAACAAAAGTAGAAAATTAATATTATTTTCACATTAGGGTTAAAATAGAATATCACCTGTGAGAGAGGGTGAAGGTGAAGGGTGGGTCCCTGACATTGCAGAAGTTTGCTGATGAAGTGGATTGGATGAGAGAGATGGAAGGTGAGGTCCAATCCACTAGTCCACTAGTCCACTTGGAGAGAACAGAGGCTGTGTTCTGCTATGCTCTGCTCCACCACAGGGCTCACAACACAATCACTCTATCCTCTATAACAATCAACCACCAAGGATCAAGGTAAACCTG

Gene Sequence:

>Vu_13147(+)

GCAGAGGAGAGGGCCATGCAACCCAAATCCGCCGCCAGACTGCCCAGCTTCCGCTCTATTCCGGCCTCCTGGTTAGAATCAGTTCTTTTGAAAGAGGAGGAAGAACAAGAAGAAGAAGAGGAGGAACAAGAAGAAATCCAACAAGCTGAAGAAGAGCCCTTGACCTTTACCCAGCTGCTTTCTACAATCGCAGCTCCCTCTCCTTCCCAACGCTATGACACACAGGATTACCCTCCCACCACCATGTCCATGTCCATCCCCAATTCAATCGCACCCAAGGTGCTTTCATCTTCTCCCTTCTATTATTCCTTCTGTGCCTCATCAGCTCCTCTTAACGATGCATATGTGTGTTCAGGAACTTTATGCTTCTGCCCCCCACCTCAAAGTGGACAACATGTTCACGTTTGAGGACTCGGTACCCTGTAGAGTTCGGGCAAAGCGCGGCTGTGCTACGCATCCCAGGAGTATTGCCGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGGTTCTATTTCCGTCTTATCTTAACATCATTATTTCATTTTTAAACCCCTTATCTGCTGCATGTATTTCACCATTCACACAGCTTATAGGAAGAAAACCCAAGCATCCTCCAAAATAATGATATATATGACTGCTGGAATCCAAATTAAAAGGAACCGGTTGATTGTGCAAAACAAGCACGTCAGAAATAAACTTCAAGGGACTAGCATGATCTGTAATGATCACTGGATTGTGATCTTAACCAAACCTGCCCTGAATTTCTGTTATGCAGAAATAGTATCTAAACTCTGAAGAAAAGCACCATATCCGCTTAGCAACTATTTTCCTTTTAAAGACTAGGAATTCACTAAGCAATTTTTTTCTGAATAACCAGTTAAGGAAACAAAAGTAAAAACTATTATGAAAATGAACCTAATTATTGTGTCAATAACTCAGACCATTTCATAATTCTAAGTATCTAACAGAGTTTAATCGCTGCTCCTTAACGGCCGTGGGCACTCAATAACAAAACCCTTAAAGTTAATGTAGTTTTTGGAATTGATATTAGATAAATTCCTTAACAAAAGCCCCTCCTTCAAAGGCTGACCATCAGACATTGGGTTCGTTGCATGGCTGTGATATCATTTGTTACGAAAAGGCTAACGGACACAAAATTCCTTAACATCTGATTAAACCAACTTAGCCTCAGTTCTCAGATGTTAGCTTCTGCTATGCATTTCTCATTAGTTCTCCCAAGTTCTTCTAGACACTTGGATTCAGTTAAGTAACTCCTGAACACTTAAGTTTATCCTCATTCAGCCCTCATATACAGATCTAGTGTCTCTTATTTTGTTTTAGTGAGGACCTATGTCGGGAAGAGTCTTCTCTACCGTATATTTACCCTTGACTTTGTTGTCTTTCTACTTCATTGTGCTCCGTATCTCTCTTCCCTTCCATGGTTGGCTTTTTCGTTTGTTAACTGTATTACAAAACTTCGATTTTCGCAGAAAGCTTAATGATAGAGGGGCTCAGTTCGTCATGATACCCTTATTTCATTCGTTTCTTTTATCCCAGAAACCAATAAAATAACTGGCTCTTGGAATAATCCGGTTCATATACCTCAATATATATTATGCAGTGTCTGATTCATAATACTTCACTCCTGCATTTAGTTTTCTCCATCACTTTTTTGAGAGTGAAGTTTTCCTCTAAGGTTAAGATCCGTGTTTGGACTAGGGCACTCGATTGGATTCAAAACTAAGGATATGTTATGGTCATGAAAACAGCATACTCCCTGGTCCCCTGATGTAATGTGTTTTCCGGTATTATTGTCAAGTAGCATGGCTATTTGGAGTAAGCACTGCATACTTTCTGTGGGAACTTTAGGGTTGGCCTGCTACCTTAGGACCTGTTCACTCTACACGCTATTATACAGAGGTTTTTGGAGGAAATAACAAACAAGCTTTAAGGAGCACTGCTTATTTTGTCAACTATTGGTGCCCTCGTCTGGGCATAATACCGGAATTTCTTCACATCATTTCCAGCTGTTATTCTCTTGCTGGATGGATTCCTGTTCCTGGTAACATCATTGGTTAAAGCCAAAGGTTTACGGGATTTTTTTTTTATTATTTTGTAAAGTGACTAGGCTGCTTGTTAAGCTGTTTGATTTCTTTTCTTGTAGCTCTTTTCTCTCTGTTTCTTTGACGTTTTTGGTATGTACTCGTTCTACCCCACGTTATCTCTTTCTTCCTATCACGACCTTAATTCTTGTTGGGTAGTACAAAAGTAGCGCAACAGATACTTAACAATCCTTCAGAAGAATAAGTATTCAAACATGTTCGGAAAGATCCAATTATATAGTGTTAAATGTAAATATTGGAGTTCGAGTTTACTTTCATTTTAATGTTTCTTTGGGTGGTAAATCAGTTCGTAGCTGTGTTTAATGTGGCGTTTGCTTTTGTTGTAGCAAACAAACACTGCAGATATGTTGGATGAGGCGGTAGCATATGTCAAGCTTCTACAAAAGCAAATTGAGGTACACTTCTTTGTGTGGCTGCATATAAGCTTGTAACTTTAACATATAAGCTAAGCTTGTAAAAGTTTGTAACTTTAATTTCGCTCTGGAGCTTTCACTCAGTATGTTGATGATAATCTCTCCTTGCCCGTGAGGTTTCGACTAACTAACTTTCATGAACTGAGACTCTTGAAACACTGCAGGAACTGACAGAGCACCAACGGAGGTGCAGATGTATGGTTCAAGAATAAAATGCCGACAGTACATGCAGTGGTTGGCCGCTGAAGATTTATTTTATGAATTATCAGATTTTTTGGTGATCAAGCAGACACTCCGGATGCTAATTATATAAATTTTAAACTCTCTGGATACCATAAAGGGATGCTAATTATATTTTTTTAATATCGCTGGATAAATTAAAAGATGCATACAGACATGTTGGGGATGGCATAGGTAGTTTATTTAAAATATAGAAACTGTCCGACAAGCTTGTGAATCCTTGGCTACTTGTGAAGAAAATGGTCTGATGTATTTAAGATGCACCGTCAGTTAAATAATGTTTAACTCTTGAAAGATTGTCATTATCTAAAGAATTATGTCGGTCAGGAATTTTATCGGATGGCAGTGTAAATGTTTCTTGTATTGTAAAAATATTTTATTGAACTGTCCAATGAGTTAATAATTTGGTAACACTGACGAAATTAGTTATC