Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13436 LG3 28482120 28484192 PREDICTED: lectin-domain containing receptor kinase VI.3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   abscisic acid-activated signaling pathway, protein phosphorylation, defense response to oomycetes, defense response to bacterium, defense response to bacterium, protein phosphorylation, defense response to oomycetes, abscisic acid-activated signaling pathway, protein phosphorylation, abscisic acid-activated signaling pathway, seed germination, abscisic acid-activated signaling pathway, defense response to oomycetes, defense response to bacterium
Cellular Component   is active in   plasma membrane
Cellular Component   located in   extracellular region
Molecular Function   enables   transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity
SNP Position Effect Amino acid change
G/T 28482281 missense_variant p.Pro523His
G/C 28482282 missense_variant p.Pro523Ala
A/T 28482330 missense_variant p.Leu507Ile
G/T 28482334 synonymous_variant p.Ile505Ile
C/T 28482408 missense_variant p.Ala481Thr
G/T 28482412 synonymous_variant p.Ser479Ser
C/A 28482804 intron_variant
T/C 28482837 splice_region_variant&intron_variant
G/T 28482840 splice_region_variant&intron_variant
G/T 28482884 missense_variant p.Leu437Ile
C/T 28482907 stop_gained p.Trp429*
T/A 28483153 missense_variant p.Glu347Val
C/A 28483227 missense_variant p.Leu322Phe
A/G 28483513 missense_variant p.Ile227Thr
T/C 28483611 synonymous_variant p.Ala194Ala
G/T 28483755 synonymous_variant p.Ser146Ser
T/G 28483803 synonymous_variant p.Thr130Thr
A/T 28484131 missense_variant p.Leu21His
C/T 28484168 missense_variant p.Gly9Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13436.1
MPKSLSIIGLLSLMASQALVLVFLLFPFSLHQVVASSSNGLIFEGFDENSDISLEGSSIIKTSRLLKLTNRSTNIIGHAFYKTPFQMLNKTDPPLEPSAFSFSTYFVFSIVSPSSGSGGFGLAFTIAPSTQFPGAEAGHYLGLFNSANDGNDTNNIFAVEFDTVNGYKGDSDSEGNHVGVNINGMDSRITEPAAYIKEGTESVKEDFRMAKVDAVHAWIEYDGEKRILNVTIAPWELSRPSTPLIKNYNVDLSNVMKENMYVGFSASTGQETSSHYLLGWSFAVNGVAMNLSNLPEPPPKEEDPSSFPWVNVVIGILSALTLSLLCLLILLTCYKRYMDFEVLEDWEMDCPHRFRYKDLHLATEGFKESQLIGIGGFGAVYKGVLPTSGTEVAVKRIVRSPFHGMREFAAEIESLGRLRHKNLVNLQGWCKKKNDLLLVYDFISNGSLDCKRPLDSDQFFLVEWAIENYHLGQILEVVDPKLNSVYDEEEVELVLKLGLLCTQRRSDYRPTMKQVTRYLNFDDPLPDIGDLGYGGSNSSSRMNSGFLEVTPSLRTVETSGYLSSISMSTKSLDAGR*


CDS Sequence:
>Vu_13436.1
ATGCCAAAATCTCTCAGCATTATTGGTTTATTATCTCTTATGGCTTCTCAAGCTCTTGTTCTTGTCTTCCTCTTATTTCCCTTTTCCTTACACCAAGTTGTTGCCTCCTCCTCCAATGGTTTGATCTTTGAAGGATTTGATGAAAACAGCGATATAAGCCTTGAAGGATCTTCCATCATCAAAACCAGTCGTTTACTTAAACTCACTAACAGATCAACCAATATTATAGGCCATGCATTCTACAAAACACCCTTCCAAATGCTTAACAAAACAGACCCTCCCCTTGAACCCTCTGCTTTTTCTTTCAGCACCTACTTTGTGTTCTCAATTGTATCCCCTAGTTCTGGTTCTGGGGGCTTTGGCCTTGCCTTCACCATAGCGCCATCAACACAGTTTCCTGGGGCTGAGGCTGGCCATTATCTTGGTCTTTTTAACTCCGCCAATGATGGGAATGACACAAATAACATCTTTGCGGTGGAGTTTGACACTGTAAATGGTTACAAAGGTGACTCGGACAGTGAAGGAAACCATGTTGGGGTGAATATAAATGGAATGGACTCAAGGATTACTGAACCAGCTGCATACATTAAAGAGGGTACTGAGAGTGTAAAGGAGGATTTCAGAATGGCCAAGGTTGATGCTGTCCACGCTTGGATAGAGTATGATGGTGAAAAGAGAATTCTGAATGTAACAATAGCTCCGTGGGAATTATCAAGGCCCAGCACACCACTCATAAAGAATTACAACGTTGACCTTTCCAACGTTATGAAGGAAAACATGTATGTTGGTTTCTCAGCATCGACTGGCCAGGAAACAAGCTCTCATTATCTTCTAGGGTGGAGTTTTGCAGTGAACGGTGTTGCTATGAATTTGTCTAATCTTCCAGAGCCACCACCCAAGGAGGAAGATCCCTCTTCGTTTCCTTGGGTCAATGTTGTAATTGGCATCTTGTCCGCTTTGACTTTGAGCCTTCTGTGTCTTCTAATTCTTCTGACATGTTATAAGAGATACATGGATTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTCAGATACAAAGATCTTCACCTTGCCACAGAAGGGTTCAAAGAGAGCCAACTAATTGGAATTGGAGGCTTTGGTGCTGTGTACAAAGGTGTCTTACCAACTTCAGGAACTGAAGTTGCTGTTAAGAGGATTGTGAGGAGCCCTTTCCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTGGGAAGGTTGAGACACAAGAATTTGGTGAACCTTCAAGGATGGTGCAAGAAAAAGAATGATCTCCTTCTCGTCTATGATTTCATTTCAAATGGAAGCCTTGATTGTAAGAGGCCTCTTGATTCAGATCAGTTTTTCTTGGTCGAATGGGCGATTGAGAATTACCATTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTGAATTCAGTTTATGATGAGGAAGAAGTTGAGTTGGTTCTCAAGTTGGGTTTACTATGCACTCAACGTAGATCAGATTATAGACCTACCATGAAACAAGTTACAAGGTACCTAAACTTTGATGACCCTCTTCCTGATATTGGTGATTTGGGATATGGTGGTTCTAATAGCAGCAGCAGAATGAACTCAGGTTTCTTAGAAGTCACGCCATCTTTGAGAACTGTTGAAACATCTGGGTATCTGTCCTCCATTAGCATGAGTACCAAGTCCTTGGATGCTGGTAGATAG


Promoter Sequence:
>Vu_13436::LG3:28484192-28486192(-)
AATTTGATTCCAACGTATTAGAACTTCTTTGTATGTATATACATGCAATTATTGATTTGGTCTTGTCATATGACATCATCTCTATCTCTAGAAGTTCTAAATTGATATTAACTTCATGCATTATCATATTTTTAATTTCATCCCTTTGTGCTTAAAGTATTCTTAATTTGGCTATTTACTTTAAACGTCTTTAAACCAACCTAATAGGTACCATCCTTGTATCTTTAATTTATCATAAATGATTACACTTTGCTTTTAAGCATTTTGGGTAAAATATGCTTTTTTTTTTTATTATGACTATTTATATACAAATGATAATTTATCAAATATAAAAAGCGGTGTACTGAAATAATTATATATAAAATAACACTTTTTATACGGATTGTAGTTATAATTGTATGAATGCAGTAACATATTTGTAATAAAAAAAGAAATATTTTTATATTGGTTATAGTTATAACTAATACAAAAAGTGGACGATTGACATTTTTCTAATAAATAAAAAAAATTTCTATACTGATGATAATTATAATTGTATAAAAAGTTGATGTGGTAACATTTTCGTAATAAACAAAAATATTTTTTATTGTTGTTTTAGTTATAACCGGTATAGAAAGTGATTTTTCCCTTGTAGTGATTTTCTACTTTCAGTCCAAAATAGCCTAGGTCTGCAAATGAATCAAAACATTTGAAACAACATTTGTCACGCCTTACCATTATTCATCCTCATCATCATTGGAAATATTTGAATTTGAAACTTTTCTTATCCGGTTTTGCTTCTTTAGGTGATGCACTTGATGTTGTTCATGGTTGCTTGCAGTTATACATTTGCAATGGAGAGAGATATAATTTCTAACTACGTGTGGTTTTGCATCTTGGAAGTTCAGTCTATGTTGTAATGGAGATGTGATTTGGGGTCACCATGGTTTGTGCAATCTGTAGAGGGGATGCTCGTGTTTGTTGGCGCGCGATGCAAGTTCAATGTTGTTGTCTCATGGTGGTAGCGAATCTTGGAAATTTCCTTCTTTGACGAGGTAACAAGGAGGTATGACAATATGTGTCGTGGTAATGGTTACGTTGAAAAGGTATAATGAGTGAGTGATGAAAGTCGATATGTCACTGTTCGAGGTTTGTGGATTGCGCGATTTAGGAACTTGTGATTTGTTGCGTGCTTATTCCTGTGATTAATGACTATGTGTAGGTGTTGCTTCAACGAGGCATAAGAACGTTGGCATGGTGGATTGCAGTGGCGAACAGTTGTTTGAATGTGGTTGTCTTGATTTTGACTCGTGAAAGAAGATGAACTATTGCTAAATTTTTTTATTGTACGTTTAACCGGTGTAAAAAGTTATACTTTCTGGATCAATTCTATAACCAACACCAAAAGTGAATACTTTTTATATTCTTTGCTTTTTCTATACTAATTATATAAAAAATCATTTTTGATAGTTATAAAAAAATAATTCTCTATATGTGAATCATTAACCCTTGCATGGCTCAGTTTCACTCTTTTCAACATAACTTAAACATGTGTTTAAATAAAGGGCTTCTAGTATTGTTTAACATCATATTAACATTAAAGTTATTGAAACAAAACTCTCTTCCATTAAAAGAGAAAAAAATTAGTTGAAAAAGAAAACTTCATCCAAGTTTTGAAAATTCATATGAACATAAATTTAGTATAAAAAAAATCCTAAAATAGGATTTCACATCAACCTTAATTCATATGAACATAAATTTAGGTTTGTTTAACTAATGTGAAACTCAATTTTCTTGAATCTTCTAGCTATCGGTAGGGCGTATGCCATAAAAAATGATATATATGAAAAATATAATTTCAAAAAATTCTGAAGAAAATTACATTCGCATCTGCAGTTGGTTCGTATCATTATCGTTCACATGTGAGAACATGACAAAGAAGACTTTCCTTGCATGTTCTTGGCTTTGACCAATTCAGTACTTAAATAAAGGCCCCCACATGGATTCACTTGTCAATCAAA


Gene Sequence:
>Vu_13436(-)
ATGCCAAAATCTCTCAGCATTATTGGTTTATTATCTCTTATGGCTTCTCAAGCTCTTGTTCTTGTCTTCCTCTTATTTCCCTTTTCCTTACACCAAGTTGTTGCCTCCTCCTCCAATGGTTTGATCTTTGAAGGATTTGATGAAAACAGCGATATAAGCCTTGAAGGATCTTCCATCATCAAAACCAGTCGTTTACTTAAACTCACTAACAGATCAACCAATATTATAGGCCATGCATTCTACAAAACACCCTTCCAAATGCTTAACAAAACAGACCCTCCCCTTGAACCCTCTGCTTTTTCTTTCAGCACCTACTTTGTGTTCTCAATTGTATCCCCTAGTTCTGGTTCTGGGGGCTTTGGCCTTGCCTTCACCATAGCGCCATCAACACAGTTTCCTGGGGCTGAGGCTGGCCATTATCTTGGTCTTTTTAACTCCGCCAATGATGGGAATGACACAAATAACATCTTTGCGGTGGAGTTTGACACTGTAAATGGTTACAAAGGTGACTCGGACAGTGAAGGAAACCATGTTGGGGTGAATATAAATGGAATGGACTCAAGGATTACTGAACCAGCTGCATACATTAAAGAGGGTACTGAGAGTGTAAAGGAGGATTTCAGAATGGCCAAGGTTGATGCTGTCCACGCTTGGATAGAGTATGATGGTGAAAAGAGAATTCTGAATGTAACAATAGCTCCGTGGGAATTATCAAGGCCCAGCACACCACTCATAAAGAATTACAACGTTGACCTTTCCAACGTTATGAAGGAAAACATGTATGTTGGTTTCTCAGCATCGACTGGCCAGGAAACAAGCTCTCATTATCTTCTAGGGTGGAGTTTTGCAGTGAACGGTGTTGCTATGAATTTGTCTAATCTTCCAGAGCCACCACCCAAGGAGGAAGATCCCTCTTCGTTTCCTTGGGTCAATGTTGTAATTGGCATCTTGTCCGCTTTGACTTTGAGCCTTCTGTGTCTTCTAATTCTTCTGACATGTTATAAGAGATACATGGATTTTGAGGTTCTTGAGGACTGGGAGATGGATTGTCCTCACAGGTTCAGATACAAAGATCTTCACCTTGCCACAGAAGGGTTCAAAGAGAGCCAACTAATTGGAATTGGAGGCTTTGGTGCTGTGTACAAAGGTGTCTTACCAACTTCAGGAACTGAAGTTGCTGTTAAGAGGATTGTGAGGAGCCCTTTCCATGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTGGGAAGGTTGAGACACAAGAATTTGGTGAACCTTCAAGGATGGTGCAAGAAAAAGAATGATCTCCTTCTCGTCTATGATTTCATTTCAAATGGAAGCCTTGATTGTGTCCTATATAACCCCAACAACAGCTTTGTCTTGAACTGGGGGCAAAGATTCAACATTCTCAAAGGCATCAGTGCTGGACTATTGTACTTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGACGTGAAAACTAGCAATATTTTGATAGATGGAAACTTGAATGCACGTTTAGGTGACTTTGGACTTGCAAGGCTCTATAACCATGGTCAAGTATCACACACAACCAGGGTGGTTGGAACCATTGGCTACATTGCACCAGAGTTAACTCGCACAGGAAAAGCTTCTACAAGAACTGATGTTTATGCATTTGGGGTTGTGCTTCTTGAAGTGGTCACAGGTAAGAGGCCTCTTGATTCAGATCAGTTTTTCTTGGTCGAATGGGCGATTGAGAATTACCATTTGGGTCAAATTCTTGAGGTGGTTGATCCTAAGCTGAATTCAGTTTATGATGAGGAAGAAGTTGAGTTGGTTCTCAAGTTGGGTTTACTATGCACTCAACGTAGATCAGATTATAGACCTACCATGAAACAAGTTACAAGGTACCTAAACTTTGATGACCCTCTTCCTGATATTGGTGATTTGGGATATGGTGGTTCTAATAGCAGCAGCAGAATGAACTCAGGTTTCTTAGAAGTCACGCCATCTTTGAGAACTGTTGAAACATCTGGGTATCTGTCCTCCATTAGCATGAGTACCAAGTCCTTGGATGCTGGTAGATAG