Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13819 LG3 35470206 35471631 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cellular response to hypoxia, leaf senescence, cellular response to hypoxia, cellular response to hypoxia, regulation of transcription, DNA-templated, leaf senescence, cellular response to hypoxia, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
A/T 35470634 synonymous_variant p.Ala177Ala
A/T 35470699 upstream_gene_variant
T/C 35470810 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13819.1
MEPDWDLHAVVRSCTTTSSAAAATTTVSTTSSDFGASVPPSTSGSFFSVYNPAVQGGQVVSPLENPYGARPSIEELHELCKPFFIKPQLHTFQPSSPLSPFSYSSVSKSPCSQQEQKQPPQPGSASTPKQKRRKNQVKKVCDVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHDHPAPTHKSSLAGSTRYKPQTGGDTTTTKPVSPATSSEVAQHSTKSECIEEELEDLMKDDEEANEFDSTETVVSDDFFEGLEELTGSAIDPFTATSTIDRWSLANNATTAAGGS*


CDS Sequence:
>Vu_13819.1
ATGGAACCAGATTGGGATCTCCACGCCGTAGTCAGAAGCTGCACCACTACTTCCTCCGCCGCCGCCGCCACCACAACCGTATCCACCACCTCATCTGATTTTGGGGCTTCTGTCCCACCTTCTACTTCCGGCAGCTTCTTCTCTGTTTACAACCCTGCTGTACAAGGAGGTCAAGTTGTGTCTCCTTTGGAGAACCCCTATGGAGCAAGGCCTTCCATTGAAGAGCTTCACGAGCTTTGCAAGCCTTTCTTCATCAAACCACAGCTTCACACCTTCCAACCTTCTTCTCCTCTTTCTCCCTTTTCTTATTCATCAGTGTCCAAATCACCTTGTAGCCAGCAAGAACAGAAGCAGCCTCCCCAACCAGGTTCTGCCTCCACCCCAAAACAGAAAAGAAGGAAGAATCAGGTTAAGAAGGTTTGTGATGTGGCAGCTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTACCGATGTAGCAGCTCAAAAGGATGTTTAGCCAGAAAACAGGTGGAGAGGAACAAATCGGACCCAACAATGTTCATAGTGACATACACTGGTGAACACGACCACCCTGCTCCTACTCATAAAAGCTCCCTTGCTGGCTCCACTCGCTACAAACCTCAGACTGGTGGAGACACAACCACCACAAAACCTGTTTCTCCAGCGACCTCATCAGAGGTGGCACAACACAGTACAAAGTCAGAGTGCATAGAAGAGGAGTTGGAAGATCTGATGAAAGATGATGAAGAAGCAAATGAATTTGACTCAACAGAAACAGTGGTATCAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGGGTCTGCCATTGACCCCTTTACAGCTACTAGTACCATTGATCGGTGGTCACTGGCCAATAATGCTACCACTGCCGCTGGTGGTAGCTGA


Promoter Sequence:
>Vu_13819::LG3:35471631-35473631(-)
ATGGTAAGGGAAGAAAAAAAATGAAATGTGATGTATATTTCTTTTTATTAAGTCATTTTGTTCATTACAACTTTGGAGGTCACATATACTTAAATTTATTTTATACCATATCAAAATTTATTTTCTCATATGATATATTATTGTCTATTCTAGTACTAGTCAGATTTGTTGAGTCAAGCTTATCATATCATCTTGTATTATATGTTTTATGTAAGTGTAAGTTTTATTTTAAAAATCATATTTCTGGAGTGGAGTTAGAGTTCAAATTTATTTTTTAATACAACATTTGTTATATGAGATTTGTGGATTTATCCCATTTTACTGATATTCCTTTTATTTTTCATATTTTTGATAAATTAATTTGTTAGATTAAGTTATATTTTAAATTTCTTTTCATAAAATAATATAAAATTTATTAATACTTATTTTAGTATGATTTATTGAATTATTTGATATTTATATTTTTGAAATCAGGTAATCTAAAATAATGTATTGAAGATTTCTCATTCATTAAATATATAACCAAATATACACATATTAAACCTCAAATTTTAGTCAAACAAATTTTTACTGTCAATTTTTTTTATTCTCTAGCTAAGTTAGCTCTGTAACAGACAACACAAATTTTCAGCATACTCTTCAAAATTATTCTTAATAGTACTCGATAAACTCTGCACATAAACTCACTATAATAAAAAATATTCTAAAATAATATTTTTTTTGCCGAAGTATTTTTCTCTTTTGAATTTTCTCTTTTTTATGTCAAGTTGCATGTTAGTACATGCATCAATCCAATTACTACCACTAAAATGAGATTTTCTTTTTTGCTGAATGTTTTTCACTCATTTTTTCTTTTTATAGCTATTTTTGTATATTGATGAATTTTCCTAAAAGTTCTCATACTAGTTATTTTTGGAGAATATTTAAACTTGAGAAAAAAACTTCGCGACTATAGTCTTCACAATTGAACTAATTACCAATCCTTATTTTGCATAGAAAATAGACTAGATAAAACAATTTTTTTTAATTTTATATTTGTATAAAAAATACCTGTATAATGTTATATTTAATTAACTTTTTAAATAGTTATTTATAAAAATTATTTTCTTGTCTTTTGTCTGAAATAAGATAAATGTTAATTAGTATTCTTAAAACGATTAAAAAATTAGTCATATGTAAAAAAATACATTTTGAATAATTTTTAATTAAAATCCTTCCCTTCAATAGTATGATTTTTGTTTCTCTTCCTTTCATTCTATGTGTTTTTTCACTTTCATCTCAAGAAGTTTTTACTACAATTTTGTCCTGTGTGAGCTGGCAACAGCATTCATATTTAATTATTTGTCTGCATATGAATTACTTTCAGTCACAGTCCCAAAGAGAAGAGATGCGTGCGGAACTGTGATTCTTTGCCATAATCCAAACCTAAAAGTCTCACCACTACCTTTGACATTTTAAAATGTCAACCCAAGTAAATCAAAAACTGGTTCCATAATAAAACAATAATATAACAAAAGAAGAAGAGAAAAAAAGAAACACAAATCAGAAAGCACTTGAGAACCATCATACTTGGACATAGATACCAAATTCCTCATCTATTATCTCTCTTTTAAATATATAGTTACCAGTTATTTTGTTTGACTGTAATATTTTTTTTTAAATGATGTTAATTAATAATCTTCTAACAATCAATTGTATGTATTAACTCACTTCTTCTTTGTTACAATAAATATTTACATTAATATGTTTTTTCTTATATAAAGTCCTAAATTAAAGAAAAACACTAACATGATGTTTTTTAAATTTGGAAAGAGATAAGGACTTATTTGTTTGTGAGTAGACTTTTGTTCAATGTCCACTTTCTCTTACTATCTATATATACATGTCTTTTCCTACTTATGGCATCTTATCTTTTTCTCCCTCAAACAAAAGTCAGCGCCTTTTTTTTTTTCTTTGTCCTCTCTCAGTACCAGACTTTTTCAGACCTTGTCTTTACTGTT


Gene Sequence:
>Vu_13819(-)
ATGGAACCAGATTGGGATCTCCACGCCGTAGTCAGAAGCTGCACCACTACTTCCTCCGCCGCCGCCGCCACCACAACCGTATCCACCACCTCATCTGATTTTGGGGCTTCTGTCCCACCTTCTACTTCCGGCAGCTTCTTCTCTGTTTACAACCCTGCTGTACAAGGAGGTCAAGTTGTGTCTCCTTTGGAGAACCCCTATGGAGCAAGGCCTTCCATTGAAGAGCTTCACGAGCTTTGCAAGCCTTTCTTCATCAAACCACAGCTTCACACCTTCCAACCTTCTTCTCCTCTTTCTCCCTTTTCTTATTCATCAGTGTCCAAATCACCTTGTAGCCAGCAAGAACAGAAGCAGCCTCCCCAACCAGGTTCTGCCTCCACCCCAAAACAGAAAAGAAGGTTAATATGCCCTTTTTCTTCCTTTTTATAATTCATGGAATGGGAATTAGATTCTCCAATCCAGAAAGATTTTGAATTTATTTAGCTCTTAAAAACCATGTCTTTGTGGTTCATTCATGACTTTGTCTGAAATGCATGTTTTTTTTTCAACCACAGGAAGAATCAGGTTAAGAAGGTTTGTGATGTGGCAGCTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGTTTACCTTAAAAAAATTTCGTCTTTTTTAACAATAAAAGTTTAATGGAGTAGTTAATTCCTAGTCTAAAATAAGAAAAAGTTTTAAACTCAAACAAAACTCACAAATACAATTATATTTTCTTTATCTCATAGATATGAATGGAAACTTGTGTGTACAATTTTTAAGAAGCCAGACTTTGACTTGTTACACTTTACCAAGTCTTTGTTGTTAGATTTTGCTTTTTTTTTTTTTAAAAGAAAGCCAAAAGGGGTTAAAGTTAAGAACTTAAAAGAACCAACGAAGACATTGTTTGTTGTGTGATTTACAGGGGATATTACCGATGTAGCAGCTCAAAAGGATGTTTAGCCAGAAAACAGGTGGAGAGGAACAAATCGGACCCAACAATGTTCATAGTGACATACACTGGTGAACACGACCACCCTGCTCCTACTCATAAAAGCTCCCTTGCTGGCTCCACTCGCTACAAACCTCAGACTGGTGGAGACACAACCACCACAAAACCTGTTTCTCCAGCGACCTCATCAGAGGTGGCACAACACAGTACAAAGTCAGAGTGCATAGAAGAGGAGTTGGAAGATCTGATGAAAGATGATGAAGAAGCAAATGAATTTGACTCAACAGAAACAGTGGTATCAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGGGTCTGCCATTGACCCCTTTACAGCTACTAGTACCATTGATCGGTGGTCACTGGCCAATAATGCTACCACTGCCGCTGGTGGTAGCTGA