Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14331 LG3 47106418 47107167 PREDICTED: transcription factor TCP7-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of long-day photoperiodism, flowering, positive regulation of long-day photoperiodism, flowering, regulation of circadian rhythm, positive regulation of long-day photoperiodism, flowering, positive regulation of long-day photoperiodism, flowering, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of long-day photoperiodism, flowering
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, sequence-specific DNA binding, transcription regulator activator activity, protein binding, protein binding, sequence-specific DNA binding, DNA-binding transcription activator activity, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding
Pathway   B 09159 Environmental adaptation   C 04712 Circadian rhythm - plant [PATH:ko04712]
SNP Position Effect Amino acid change
C/T 47106726 synonymous_variant p.Thr103Thr
G/C 47106906 synonymous_variant p.Pro163Pro
G/T 47106966 synonymous_variant p.Pro183Pro
G/T 47107035 missense_variant p.Gln206His
G/A 47107078 missense_variant p.Gly221Arg
C/T 47107125 synonymous_variant p.Gly236Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14331.1
MSNSDGPTNGVTTNDANAVVDSHQRSATTAAATTTTQGTALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFSTVSDHKPLLPPPTPFILGKRIRPDDTDAVSKDEAVSLVAPPTPPALWALPPRPDFSQVWSFAAAAAAAAPPELVSVSSQNSLFHHHQHQHHHQQQQAAMGEASAARLGTYLPGHLNLLASLSGGHGNSGRRDEEPR*


CDS Sequence:
>Vu_14331.1
ATGTCCAACTCTGACGGACCCACCAACGGCGTCACCACTAACGACGCAAACGCAGTCGTCGACTCGCACCAGAGAAGCGCCACCACCGCCGCCGCCACCACCACCACACAGGGAACGGCGCTGGCCGTTAAGAAACCTCCGTCCAAGGACCGTCACAGCAAAGTCGACGGCCGTGGACGGCGCATTCGCATGCCGATCATATGCGCGGCTCGCGTGTTCCAGCTCACGCGTGAGTTAGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCTGCCACCGGCACCGGCACCACACCGGCCACTTTCTCCACCGTCTCCGATCACAAGCCGCTCCTCCCTCCCCCCACGCCTTTCATCCTCGGCAAGCGCATTCGCCCCGACGACACTGACGCCGTGTCTAAGGACGAGGCCGTTTCGCTCGTCGCGCCGCCCACGCCGCCCGCGCTCTGGGCGCTCCCGCCGCGTCCTGACTTCAGCCAGGTCTGGAGCTTCGCGGCCGCGGCCGCAGCCGCGGCGCCGCCGGAACTCGTTTCGGTCTCGTCGCAGAACTCCTTGTTCCACCACCACCAACACCAGCACCATCACCAGCAACAACAGGCAGCCATGGGAGAAGCCTCAGCAGCGAGGCTCGGAACTTACCTCCCCGGCCACCTCAATTTGCTGGCCTCGTTGTCTGGCGGTCATGGAAATTCCGGCCGGCGAGACGAGGAGCCTCGTTGA


Promoter Sequence:
>Vu_14331::LG3:47104418-47106418(+)
AGAGAATACAGAAGAATTCAACCGCAGACATGACAACTTCAATTCAACAATATGATGAATAACACACGCCTTCATCTCAATCACCACTTTCAAAGCAACCTATATATGCATTTCCTTCATCTCTATTCTCTCCACCTCTTACTCAACAAAATATATACACAATACAACTCTTCCTTTTGTCTTCTCTTTAACTTGCAAACTTTTAATCATATATTCTGCTAAATAAGGTTCCCAGCGATGGATCGTTTCCTTCAAATGATTTCAACTTTGGTTCTCATTCTAGTTTCTGTTCCATCACTGGCCTCAGCGTCTCTCAAAGTAGGTTTCTACACCTCCACATGTTCATCTGCGGAGGAAATAGTGAGAAATGCCGTAAACAAAGGCATTTCTGAAAATCCTGACATAGCTGCTGGTCTCATTAGGATGCATTTCCATGACTGCTTTGTTAGGGTAACTTCGCTTAACTTAACTTAACTGTATAGTTTCAGTTTCTGGTTGCATATTAAAGACTGAATTTCACCATTACGTACTTTTTGTTCAGGGCTGTGAGGGTTCTGTGTTGCTAGCATCTACCCCGGGTAACCCAATAGCGGAAAGAGACCATCTTGCCAACAACCCAAGCTTACGTGGGTTCGAGGTGATCGAGGAGGCCAAGACACAGTTGGAGGCTGCATGTCCTGGAACGGTGTCGTGTGCAGACATATTGGCTTTCGCAGCACGAGACAGTGCTCTTAAAGTTGGCGGCATAAACTACGACGTTCCATCAGGACGCAGAGACGGTCGTGTCTCTATCGCCGACGAAGTGGCACAGAATCTACCTGCACCAACCTCGAGTGCCGCTGAACTCGTGAGTAGATTTGCACAGAAGGGTTTGAGTGCAGACGAAATGGTGACACTTTCAGGAGCTCATTCGATCGGTGTGTCGCACTGTTCCGCCTTCTCGAAGCGCTTGTACTCTTTCAATGACACGTTCACGCAAGATCCCTCCATGGACTCTTCCTACGCCGAAACGTTGAAGACCAAGTGCCCTGCGCCACCTGCCACCTCAGACCCAACACTCTCTCTTGACCCTTCCACTCCGGTTCGTTTGGACATCAAATACTACGAGGGATTGATCAACCACCGTGGCCTGTTGACGTCGGATCAGACGCTGTTCACCACCCAGTCCACAAGAGACACGGTCGTGAACAATGCAAACAACGGTGCAAGCTGGTCTGAGAAGTTTGCCAAGGCAATGGTGCAAATGGGTTCCATAGAAGTGCTCACTGGCTCCAGTGGCGAGATCAGGAAGCATTGCAGCTTTGTTAATTAACTAACTCACTCACACCTGCTACACTCAAGCAAAACTCGGTCAATCACTTCTCATTGAATTCTTTTTTTACATGTTTTTGGCGGAAAATAGGTTGTTTCTTGTTGATTGAATTTGGTATTGTAAATGGCTCTAAGAGGGTGCAATGAAGCTGTGTAAATCGATGCTTACATGATTTTGATTAAAGTTGAAGTGACTGCGTTGTAGAAAGTAAGCGAGGGATGCGTTGTAGAAAGTAAGCGAGGGGAGGGTAAAGTGAGAAAGAAGGGGGGTGAAGAAAGCAAAAAGATGTCCGGAATTGTGTGACATGAATTTTGAGAGAATAATGAGGCGTTAGTTAGATGTTGGAAGAAGGAGAGGTGGCAAAAGAAGAGTGGATGATTAAACGTAGGTGCGTGGAGATAACAAAAGAAGAAACGGAGAGAAAGTTGAAGTGTATAACGAAGAAGTACGGAAAGTGAATGGGTCCCAGTGTGTTAGAGAGGAGAAAGAAGAGTTTGGGGTGTGGGGCCCAGTACCCATGTGCCTCTCTTCAGTCTCCACCACCTCCTGTTTCTGGCTCAATCATTACTCTCTCCTTCAATTCACTTCGCTTCAGTTCTCAACGTCAAACCCAAACCAAAACCCCTTATTCTTATTCTTCTTCTCTCGCGCCGCAACCAAACACGCCCTAATCCAATTCCGACCATCA


Gene Sequence:
>Vu_14331(+)
ATGTCCAACTCTGACGGACCCACCAACGGCGTCACCACTAACGACGCAAACGCAGTCGTCGACTCGCACCAGAGAAGCGCCACCACCGCCGCCGCCACCACCACCACACAGGGAACGGCGCTGGCCGTTAAGAAACCTCCGTCCAAGGACCGTCACAGCAAAGTCGACGGCCGTGGACGGCGCATTCGCATGCCGATCATATGCGCGGCTCGCGTGTTCCAGCTCACGCGTGAGTTAGGCCACAAGTCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCTGCCACCGGCACCGGCACCACACCGGCCACTTTCTCCACCGTCTCCGATCACAAGCCGCTCCTCCCTCCCCCCACGCCTTTCATCCTCGGCAAGCGCATTCGCCCCGACGACACTGACGCCGTGTCTAAGGACGAGGCCGTTTCGCTCGTCGCGCCGCCCACGCCGCCCGCGCTCTGGGCGCTCCCGCCGCGTCCTGACTTCAGCCAGGTCTGGAGCTTCGCGGCCGCGGCCGCAGCCGCGGCGCCGCCGGAACTCGTTTCGGTCTCGTCGCAGAACTCCTTGTTCCACCACCACCAACACCAGCACCATCACCAGCAACAACAGGCAGCCATGGGAGAAGCCTCAGCAGCGAGGCTCGGAACTTACCTCCCCGGCCACCTCAATTTGCTGGCCTCGTTGTCTGGCGGTCATGGAAATTCCGGCCGGCGAGACGAGGAGCCTCGTTGA