Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14499	LG3	48716329	48718693	"PREDICTED: serine/threonine-protein kinase STN7, chloroplastic isoform X1 "	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	photosynthetic acclimation, regulation of photosynthesis, light reaction, protein phosphorylation, regulation of photosynthesis, light reaction, regulation of photosynthesis, light reaction, regulation of photosynthesis, light reaction, protein phosphorylation, protein phosphorylation, circadian rhythm
Cellular Component	located in	chloroplast, chloroplast, thylakoid membrane, chloroplast, thylakoid membrane
Molecular Function	enables	protein binding, protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein kinase activity

SNP	Position	Effect	Amino acid change
A/T	48716382	missense_variant	p.Gln18His
C/T	48716842	upstream_gene_variant
G/C,A	48716942	synonymous_variant	p.Ser176Ser
T/A	48717100	upstream_gene_variant
T/A	48717186	upstream_gene_variant
C/T	48717484	upstream_gene_variant
T/A	48717538	upstream_gene_variant
A/T	48717539	upstream_gene_variant
T/A	48717567	upstream_gene_variant
T/A	48717576	upstream_gene_variant
T/C	48717611	upstream_gene_variant
C/T	48717969	upstream_gene_variant
G/A	48717998	synonymous_variant	p.Lys221Lys
A/T	48718208	upstream_gene_variant
A/T	48718260	upstream_gene_variant
T/G	48718532	upstream_gene_variant
A/G	48718535	upstream_gene_variant
A/G	48718603	missense_variant	p.Asn307Asp
T/A	48718608	missense_variant	p.His308Gln

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14499.1

MATVATTGIGVGVTKLQQHQKPRQKSLFLGQRLRIRPSGEAQCSSRLNFSNPTRVVKVFALGGEWIDTVHNLFVGVGVGLPCSVMQCGDVIYRSTLPKSNGLTLTVPGVILALGTLSYLWATPGVAPGFFDMFVLAFVERLFRPSYKKDDFALGKKLGEGSFGVVYRVSLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACASSCADFVYGFLESSSKKSAEYWLIWRFEGDATLADLVQSREFPYNVGEVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEESRTFKIIDLGAATDLRVGINYIPKEFLLDPRYLL*

CDS Sequence:
>Vu_14499.1

Promoter Sequence:
>Vu_14499::LG3:48714329-48716329(+)

ACGTAAGGTAGTGTGTAAGTGTGAATGAGAGTGTCGGTGGCATGGTGACGAAACGGAGGAATGGAAACCAGAGAAGAAAAAGTTTTGGAGTGTATTTTTTGTGAAGGTGCAGGGTAGTTTTGGAATTTTGCGGTGGTTTAGTTGGGTTGTGGACCCCGCAATGAACAACATGGTAGGAAGCCAGGCTGGAAAGACGTGACCGTGGCTTTTTAAACTTCGAAATGTGTGCTTTGTTGTTTTGTTGTGAAAAAATGATGTGCTTTTTGCACCGTTTGATCTATCCCACGGTGAGAAACTGACAACTATGATTTGGGTGTAGTAGGTTTGTCAGCACTTGATAATCGCGATTGGCGAGGAGTATGGGGATGTTGTAGCAGACTTTTTTTTTTTTTCAGAATATTACTTTTTTCAAAGAATATTTAAAAATAGATTCTTGCCAACATTATTTTAGGAACTAGACCCATTTATTGTAGAGTTTGGAAATTCGATTCCGTTGAGCTTATTCTGAACAAAAAAACAGGAGACGTTAGAAAACTAACTTGGAAGACAGAAGAAACAAAATGTAAAAATAATTTAAAGCTAAATAAATTATAAAATGAATTAGTATAATTTCAATTTATGTTTTGTAATTAGAATAAAGATTATTATTATTTTACATACTAGGTAGTTATTTAGACTCATGTCTACGTTGTAGTAGAATGATAGTGTTTTATTAGTGTTTTCTTTCATAAGTAGATGTAGTCATTACATGCAGAGACAAAAGAGCAAAGCATGTTAGGACAAGAGAAACTCATCTATAAAAATTTGGTTTTGAAGTTTAATTAAACAATATGAAATGAAGAAATATTTATATTATACTTAAAGGGTTTTAAATGAGTCCCTGTGAGCCAAAATAATACTTATATGATACTTTGTTGCATTAGTTATCTTAGTGAAATTTAATTAATTAAGAATTTAATGTAATATCTGTGATTAGATGAACTAATATAAAGATATTATATATACTCTCTTTCTAAGTCTCTTTATTTTTCATGTTATTTTCACATGAGAGACATTACATAGCAGCTTAAAACGAAAATTTTCTTTGCCATTTACTTGATAAATACAAAACTATTGTTTGAATATCATTTAACTAACAATAGTTATGAATCTTATTTAAAAGGTTTTAAAACACCATTCAACTTTTCTATTTACAATTTTTTTTACCAAATATAAAGCACTAAATTAAGAACGTTTCATATTAATAAAAAACTAAAAAAGAAATGTGTAGGTATAAAATGCTCAAATCTAAGAATGTTTTATTAAAAAAATTACACAAAGTCCTATATAGCCAACAAAACTAATAAATGTGTACAAGATACATAGATAAAGACTCAAAGAAAAGACAAACTTACTCTAATTTTATATTTTTTTCATAACTATATGAATTTACTTTAAGATTTGCATTTGGTTGAACGAAATGTTATAATGATTTCAATTATTCTATGATGAAAACATATTGTCAATTAGTTCTATTATTTCAAATATTAGGGATTGAATTAAGTGCATTAAGCGAATCTTAAATGTATAAATTAATATTAATTTATGTGATAAATTTAAATCATTTTATCTTCTTATTGGTAAATGTACCTAAATGCAATCTATTTTTATATATTTTTTATGTATAAAAAGTCTAACTAAACAACAAAAAAGAATCAAACAAAATAAAACGTAGAAGTTAGTATAAGATAAGCGCATTACGTAGGCCCAACAGGAAGCCCATTAGTATCTACGTGTTATTTGTGGCCTATGTTAAACTTCAATCCAATTTCCGAACTTCCAATGTAACTGCAGCCACAATAAATACCTGATATAACCGCCAACATATAAATATAAATATAAATCATATCTAATTGTAAATTAAATTTAAAATATAAAAAAGTTGCGGTGGAAAATGGAAGGGAATTGCAGGTGAAGTTCTCAAGATTTTTCCAACAGAGCAAAGCTAAACTGAACTGGCA

Gene Sequence:

>Vu_14499(+)

ATGGCCACTGTTGCAACTACAGGAATTGGAGTAGGAGTGACCAAGCTCCAACAACACCAAAAGCCCAGGCAGAAGTCCTTGTTTCTTGGCCAGAGGCTTAGGATTCGACCCTCTGGGGAGGCTCAATGCAGTTCAAGATTGAATTTTTCAAACCCAACAAGAGTGGTTAAAGTTTTTGCACTAGGGGGTGAATGGATTGACACAGTTCACAACCTTTTTGTGGGTGTTGGGGTTGGACTTCCTTGCAGTGTGATGCAGTGTGGGGATGTAATCTATAGGAGCACTCTTCCCAAGTCCAATGGCTTGACTCTTACTGTCCCTGGGGTGATTCTGGCTTTGGGGACTCTATCTTACCTTTGGGCCACACCTGGTGTGGCACCTGGTTTCTTTGACATGTTTGTTCTTGCCTTTGTTGAGAGGTTGTTCCGACCAAGTTACAAGAAGGTACGCGTATTCCACTTGATTTTTTGAAATTTTTATGAAATTTGTTTCCGGTGGCAGTTCTTGCTGAGACTGGTTTATGATGGCAGGATGATTTTGCTCTGGGGAAGAAGTTGGGGGAAGGATCATTTGGAGTGGTTTATAGAGTGTCACTGGCCAACAAACCCTCTTCGAAGGTGTTGCTCTATATTCTATTTGGAAGCTCCTGAAGTTTTTGAAAATTTACTTGTTCTTTTGTACTAGCTTATTATTGCTTGAATATTTTATGAACTACTTCACATGTGCACAAGTTAATTTCAAGATAACCATTAATTTTCAATAATGGATCACTGACGGACAATTCTCCCGCTTGAGCTGTCGTGGTGGTGTGACATGTTTCTGACACTGACACCTCATATGACTCATGTCGCCAGGGTTTTATTATAATTTTGTTATTGGTGTCTCAAATGCCTGAGCTGAGACGAGTGTAGACCAGACAATTTAAAGACACTTGTAGTATAAAAAGCAAATTAAGTTTTTTAAACATCAATACAAGTCAGATTGATATATAACATGATACAAAGTATCAACATCTAAAATCTAATCAGTCTTAGTATTTCTTTTTGTGAAGTTCATATTCATGCAGAGAAGGTGAACAAACAAATGTTCCTTGTCGATTTAAGTCTTTTCTCATGTTGATATTTAATTTCTTTTGTCATGTGGTGTCCTGTAATACGAACATTAGTCATATTGGAGTGCCCTTGTCTACTTCATGGCCATGTTGGTGTTTATTTTGTTTATAAATTTTGTTTGTATTGTCTTAACTTTAGTTGCTTTAGTGTCATGGTTTGAGGAAAAAAAATGAGGAACCCACATGTTGATATGGCATATCTGCTTCTGAGATTTCAGTGTAAGATAGCTTGAATTATATAAATATTACTTATGGTTCTTTTTGGTTCTCACTGGAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAGCAGCTGTGCAGATTTTGTCTATGGTTTTCTTGAGGTGTTTATCTATTAAGACTAGTACTACCTAACGAATTTTTGGTATTATCATCATACATGTATGGGGAAACCAAAGACATTCTCATCACATCATTTAATATTTTAGTTTCAGTCACGACAAATACAACAGTTCTCACATAATGTTTGCAGAGCTCTTCAAAGAAATCTGCTGAATACTGGCTTATATGGCGGTTTGAAGGGGATGCCACCCTAGCTGACTTGGTGCAGAGTAGAGAGTTTCCATATAATGTTGGTACTCTATTTAAACATTATGGTTGGAATTGATAAATTTTCAATTTTATAGTATTTGGCCTTATATTTTGTACTGAAGTTTATAAAGTTTACTTGTATTAATGTGGGGAAAGTTTTGTATTTCTTTAACTGCTCTGCACTATATTTCCGACTCAAAGCACTTTTCTTCTTATATTCAATTTGAATTTTGTGCTCCCATGGTAAATCATGCTTTCTTATCAGACCAAATGATTGTCGCAAATTCCAGGTTGAAACATTAATTTTAGGTGAGGTTCAAGACTTGCCCAAGGGATTAGAAAGAGAAAATAGAATCATTCAGACAATCATGAGGCAGATCTTGTTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAGAACATTATTTTCTCCGAAGGTAAAGAATCTAGAGACTTTTGTTCAATGCAAAAAGATCCATGATCCAAATTAAGCTCATTTGTTTAAACTATGGGGATCAGAGTCTCGGACATTCAAAATCATTGATCTTGGAGCTGCTACAGACCTGCGAGTGGGCATAAACTACATTCCAAAGGAGTTTCTTTTGGATCCAAGGTATCTTCTTTGA