Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14621 LG3 50386015 50390044 PREDICTED: transcription factor HBP-1b(c38)-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   transcription, DNA-templated, regulation of flower development, regulation of flower development, regulation of flower development, transcription, DNA-templated, regulation of flower development, transcription, DNA-templated, transcription, DNA-templated, regulation of flower development
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, DNA binding, protein binding, protein binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
A/G 50386087 synonymous_variant p.Phe434Phe
C/T 50386093 synonymous_variant p.Arg432Arg
G/A 50386228 intron_variant
T/C 50386249 intron_variant
G/C 50386272 intron_variant
G/T 50386341 intron_variant
T/C 50386346 intron_variant
C/T 50386352 intron_variant
T/A 50386371 intron_variant
T/A 50386381 intron_variant
T/G 50386383 intron_variant
T/C 50386428 intron_variant
G/A 50386429 intron_variant
G/A 50386468 synonymous_variant p.His408His
G/T 50386473 missense_variant p.Leu407Ile
C/T 50386548 missense_variant p.Gly382Ser
G/T 50386550 missense_variant p.Thr381Asn
T/C 50386702 synonymous_variant p.Lys330Lys
T/C 50386738 intron_variant
C/A 50387041 missense_variant p.Gly249Val
T/A 50387110 intron_variant
A/T 50387129 intron_variant
C/T 50387211 intron_variant
G/A 50387234 intron_variant
A/G 50387246 intron_variant
G/A 50387248 intron_variant
G/A,C 50387251 intron_variant
C/T 50387256 intron_variant
T/C 50387257 intron_variant
A/T 50387258 intron_variant
C/T 50387262 intron_variant
A/T 50387281 intron_variant
A/*,C 50387304 intron_variant
T/G 50387312 intron_variant
C/G 50387315 intron_variant
G/A 50387321 intron_variant
T/C 50387322 intron_variant
A/T 50387346 intron_variant
G/A 50387359 intron_variant
G/A 50387360 intron_variant
C/T 50387371 intron_variant
A/G 50387392 intron_variant
C/G 50387398 intron_variant
A/C 50387400 intron_variant
C/T 50387407 intron_variant
A/C 50387419 intron_variant
A/G,C 50387420 intron_variant
G/C 50387433 intron_variant
C/T 50387436 intron_variant
T/A 50387438 intron_variant
G/C 50387442 intron_variant
C/T 50387450 intron_variant
C/A 50387455 intron_variant
G/A 50387456 intron_variant
A/G 50387471 intron_variant
G/A 50387476 intron_variant
T/C 50387479 intron_variant
C/T 50387481 intron_variant
C/T 50387496 intron_variant
C/A 50387497 intron_variant
C/T 50387504 intron_variant
T/C 50387512 intron_variant
C/T 50387515 intron_variant
G/T 50387520 intron_variant
T/C 50387537 intron_variant
C/T 50387540 intron_variant
G/A 50387545 intron_variant
A/G 50387621 intron_variant
G/A 50387668 intron_variant
A/G 50387800 intron_variant
T/A 50387887 missense_variant p.Leu210Phe
G/A 50388002 intron_variant
A/C 50388058 intron_variant
C/T 50388079 intron_variant
T/C 50388134 intron_variant
A/C 50388136 intron_variant
A/G 50388166 intron_variant
T/C 50388171 splice_region_variant&intron_variant
T/A 50388184 stop_gained p.Lys193*
T/C 50388248 intron_variant
G/T 50388548 intron_variant
T/C 50388820 intron_variant
T/C 50388827 intron_variant
T/C 50388849 intron_variant
A/C 50388925 intron_variant
T/A 50389114 missense_variant p.Gln133His
T/C 50389303 intron_variant
A/G 50389353 intron_variant
G/T 50389419 missense_variant p.Gln71Lys
C/T 50389656 intron_variant
T/A 50389680 intron_variant
T/A 50389686 intron_variant
G/A 50389706 intron_variant
G/A 50389808 synonymous_variant p.Thr29Thr
T/C 50389920 intron_variant
A/T 50389943 intron_variant
A/G 50390000 synonymous_variant p.Cys15Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14621.1
MQGFKTAQASSQLYCHSSFLLRGNDGNRNPTTGFCDLGDLHHSSAVFHQEAGVDLGSSSMFSVKSSNVVGGSNMQYGTLSTNVGSSQIGSSGGGCMDTGLQLMYHKGVSMQTLPLGNGHVDNWADSGIVDNSQQTDDTSTDIDTDDRIQCNRVKNGSRMLMQSKDQTKVKPEDQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQELQRARQQGILIGTEGNQGHLAVGNGALAFDMEYAHWVDEHQHLLNDLRLAVNSQMSDDELHILVEGVRVHYNELFTLKRIGAKADIFHILHGTWKTPVERRFMWLGGFRSSELLKIIKDHLEPLTEQQLLDICNLQKSSLQSEDALEKGMEALEQYLVETLSSTSLGPTGNGNVADYMDQMALAMAKLGELEGLLHQADLLKQHYLRQLQRILTVRQTARAFLVQNDFISRLRALSSLWLARPRE*


CDS Sequence:
>Vu_14621.1
ATGCAAGGCTTCAAGACAGCACAAGCAAGTTCACAACTCTACTGTCACTCTTCCTTTTTGCTTCGGGGAAACGACGGCAACCGAAACCCCACCACCGGGTTCTGTGATCTTGGGGACCTTCACCATTCCTCTGCCGTTTTTCATCAAGAAGCTGGTGTTGATTTAGGCTCAAGTTCTATGTTTAGTGTGAAGTCAAGCAATGTTGTTGGTGGCAGTAACATGCAATATGGAACATTGAGCACGAATGTTGGGTCTTCGCAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAGGGCTGCAACTGATGTACCACAAAGGAGTGTCTATGCAAACTTTGCCTTTGGGTAATGGTCATGTTGACAATTGGGCTGATTCAGGCATAGTGGATAATAGCCAACAAACTGATGATACTTCCACAGATATTGATACTGATGATAGAATCCAATGCAATAGAGTTAAGAATGGCTCACGTATGCTTATGCAGTCCAAGGATCAGACAAAGGTCAAACCTGAAGATCAGAAGACCCTTCGTAGACTGGCTCAGAATCGAGAGGCTGCAAAGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAATTGGAGAACAGCCGAGTCAAGCTTGTTCAATTAGAGCAAGAACTTCAACGAGCACGTCAGCAGGGTATACTTATTGGGACTGAAGGGAATCAAGGTCATTTGGCTGTGGGAAATGGTGCCTTGGCATTTGACATGGAATATGCTCACTGGGTTGATGAACACCAACATTTGCTCAATGATCTAAGATTGGCTGTAAATTCTCAAATGAGTGATGATGAGTTACACATCCTTGTTGAAGGTGTCAGGGTACATTATAATGAGTTATTTACGTTAAAGAGAATAGGAGCAAAGGCTGATATATTTCACATACTTCATGGAACGTGGAAAACTCCAGTGGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCGTCTGAACTGCTAAAGATCATCAAAGACCACCTTGAGCCATTGACAGAGCAGCAGTTGTTGGACATTTGTAATTTGCAAAAATCTTCTCTCCAGTCTGAGGATGCTTTAGAAAAAGGTATGGAAGCGTTGGAACAATATCTTGTGGAAACACTTTCCTCCACCTCCCTTGGACCCACTGGTAATGGAAATGTTGCTGATTACATGGACCAAATGGCTCTTGCAATGGCCAAGCTTGGTGAACTAGAAGGTCTCCTTCACCAGGCTGATCTCTTGAAGCAACATTATCTTCGACAGTTGCAACGAATTTTGACAGTACGCCAAACCGCCAGGGCATTTCTTGTCCAAAATGATTTCATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCACGCCCTAGAGAATAA


Promoter Sequence:
>Vu_14621::LG3:50390044-50392044(-)
ATGTGTCAAACAATCCAACTTCCACGAGATTAGTGCCATTACTAATTAGCTCAGAGCAAAGTATGATTACCAACAATTGGACCGTAATTAGGCGTGTGAATCCAAAGCCCACTCCGAAAATTAAAAATACATAAGGTAAAGAAGTAGGTGATTGCATTTAATACACATTAATTGCTATAATTTTTGAACGGTTACTGACTTTGATATCAGAGTTCCTTCTACATATAACCTTCCAGTTTGACTAAACGGGAACCTAGGAAGACAGTGACGAAGACGAAGATTTGGATGTTAAGATACATATAATATAATAAGTATATAACATTGACCTTATGACCGAAACAATATTATGTAAATTTAGTCAAAGAAGATGTTGCTAAAGACAATTTAAGTCTTTACATTTTCTTGATAAAAAATAATGTGTTAGATATAAGGCAAAAACATAGAAGATTTTGTATGCTATAATACAATAATTTGTTTTTTTAAAATATATTCTACAAAAAAATTAGTTTTTTTTCAAGTGTGTGGGGATTATTTAAAATATTAGCATAAATAAGAACATTAATTTTAGTCCTACTATTAGTGGTACTTTCATGGGTAGACATTGCTTTCTTGGATGTTTTGATCAATACTTATGAGTGACAGTTACAATATATATTTTTTTTTACAAATAAATACATTATATTAAAAAAAATACAAAAATAAACACAATCTAATAAATTTTGAATTTTGTGTTCTATGTTATCTTTTAAAAATGTTGATGTTTTTAAGGTTTAAAGAACTTTTTGTTTTACACTTAATCGATCTCACAAACTCTTTTATCTTGCAAAAGAAACTATTATTATTTTGTTGTTGTTTTATGCTTGAGGGTGTTTTCTCTCCGAAAACAACATTATATTTACTTCAATCTAAGACTTCTTCTAATTTCTTCTTCACCAATAATTGTTTTCTTCTATTGTTATTTATTATAATTGTTTTTTGACATGATAATTTCATTTCTTGTTTGTCTTACATGCTAACATTTGATGTGTTGTCAATAATTCATTCCAACTTCACGACTCAGCACCTTGTCTAGCACCCAAGCTTCATTCTATGTAAAATTATAAAAAAAGTTTGAATTGATATATATATGTCTAACTAAGAATATGCTGGAGTGAAAAGAGGAAAAAAAAAGTAGGAAGAGATACACATAAGAATAGTGGGAATGATTTTTTTATTTTTTATTTTTTTTACCTTTAGATAAAAAAGTTTTATTTTTTAATTTGAAGTATAAGCTTTTTTACTCATGTTATTTTAAGCCGTAGTGGAGTAAACGATCTAAGTTACAAGTTATGCCCTCCAAATTCGAATCTGACCACTTTCTGATACGAATTCACACATCACTGTTCACTGTTATTCTCTTTTGTTAAGAAAAACACTGTTTAGGTGAGTGTGTCTAGTAGCTTTAACCACTCTTCTTTTACGTTTCTAAATTCTAATGTCCCTTTGGTGAGTGGCCAAACTTCTTCTTAGGAATAATCACTCACCTTTATTACATGAAATACACAGCACAGCACAATATCACGTAGGTAGGAACTATATAGGACTAGGAATAAAAAGCATGAAGGAGACGTCTAATGGGGAAGAGATTGAGATGGTCATTGAACAGTGTCAAACTGTGCCTCAGAGAGAAGCATTGAATATATAAAATCCCAAGTCAGATAGCAATAATAATGAGTAATAAACACCCTACTCCTCCTTCAAACAATAATATTATATACTATATAATCAATAAAAATATATAATAAAACAAAAGTACTTACATAGTTACATGCCATCCTCTTCTTATAGAGACGCCAAGATTTTCTCACTTCTCACACAACCTTCTTCTTGTTCCCATAACAATCTTCTATTATCTGAACACAGTAACATATTCTGATAATGATGATGATGATGATTTTTTGCGTGACGAGAGTGACAAAATAACATTTTTGGTTTGGTCGGTCCCTAGTTTGATGAAAAAT


Gene Sequence:
>Vu_14621(-)
ATGCAAGGCTTCAAGACAGCACAAGCAAGTTCACAACTCTACTGTCACTCTTCCTTTTTGCTTCGGTGTGTAGTAGCTTTGGCCACCCTTTTGTTCATTTCTTTCCCTTTATTGTTCTTCTTGTATCTCTTTGCGTGCAACAGAGTTGTGCCGTTTTGGTGTTGGCCAGTTTCTGTCTGTGCTGATGAAACAGAGCGTCTCTGTTTTGAAACAGGGGAAACGACGGCAACCGAAACCCCACCACCGGGTTCTGTGATCTTGGGGACCTTCACCATTCCTCTGCCGTTTTTCATCAAGAAGCTGGTGTTGATTTAGGCTCAAGTAACCCTCTCTCACTGCATTTGGTTGCACCGTATGAACAAAAAGAATATGGCTTTAGTGTAGTTTTGTGAAAATAATTCTTGTTTTCTATACCTTTATGAAATAGTCTTTGAAACAGAAAGTCTTTTTTTTTAAAAAAAAAAAGGAAAGAAAGAAATAGTTGCTTCCAAACACATGTTAACTGTTAATTTAAGTGAAGGAAGATCATCATGCGTCTTTTATGAGTGAGTGTGTCTGCAATTTGGATTTTGTATTCTTCTGCAGGTTCTATGTTTAGTGTGAAGTCAAGCAATGTTGTTGGTGGCAGTAACATGCAATATGGAACATTGAGCACGGTGGCTTTTCTTCTTCTTACTTTTTCGCTTTTCTGTTGAAATATTTTATATGGGTTTTATTCTGTGAGGGTCATGTGTGATTAAAATTTTGGGTTGGAAATGTTGTTTTGGTGTAGAATGTTGGGTCTTCGCAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAGGGCTGCAACTGATGTACCACAAAGGAGTGTCTATGCAAACTTTGCCTTTGGGTAATGGTCATGTTGACAATTGGGCTGATTCAGGCATAGTGGATAATAGCCAACAAACTGATGATACTTCCACAGATATTGATACTGATGATAGAATCCAAGTAAGTAAATAATCTCTTTCTCAATCATGTAATGATTTCTTTTTGGTTCGTGTGAACGAGGCTTAAGACAATAATTTAGGTTATTTTAAATGAGAATTTGTCCATACTTGGTTTAAACTTGTTATCCCTGAAAATAGTAGGAATTTTGGTTTAGTTCTATCAAGATTTCACTTATTTCTAGTTCCTACAGAACAAGGATGTGGTTTTAGTCCTCGCTAGAGACTAAAAATATCACCCTATTAAGGACTAGAGGCAAGAGATTTTGTAATTTTTTGGGACTAGGCATGATTATAATATTTTATCTGGACTATATATTCAAAATTCAAAATTAGTGATAATTTCAACACCAAAAGCATGGTTAATAATACTTCTATAGTTCTACTGGAACAGAATAATTGTGTCTGCAGAATTTCCTTTAGGTCCAATCATCAATTCAGTTGAAAACATAAGGTTTGTTTATATACATGTTGGATTAAGTGCTAATGCATTCTAAAACAGTTTGGGAAACAAGAAATTTATGCTTTCCATGAATTAGAGCAAGTGTGCTTGCTTCTGTAAATGTGTGAGGCGTTAATAGAAGTATCTTTCTACCAGATTTATGTTGTAGAAGAATAACTGAATCTTGATGATGTCTTATAGTGTTTGTTGACCATGTGTTAGTGCAATAGAGTTAAGAATGGCTCACGTATGCTTATGCAGTCCAAGGATCAGACAAAGGTCAAACCTGAAGATCAGAAGGTTTGTTGTTTGATTACAACTTGGTACAATTTGTTGCTACTAAGTTGTGTTTCATTACTAATGATTTATATATTTGGATGCCATTTTTCTAGACCCTTCGTAGACTGGCTCAGAATCGAGAGGCTGCAAAGAAGAGTCGGTTAAGGAAAAAGGTAATTGACACCTCTTTTTCATAAGTATGTTATCTATGTGATTGATGAAGAGACTACTAGACTATTTAATGACTAGTTTTTAAAAATTTACAAATTTTGGTATACTCTGATAGATTTGTGTAAGTTAAGTGTAAAAATAGAAAAATCACATACTTGTATAAAAATTATGTCAGTTTCAATTTAGTTGGGTTCAAGATATGAGCAGAACATGTTGCATTCACTTATAGGTTTTGGTTTTAAATAGGCATATGTACAGCAATTGGAGAACAGCCGAGTCAAGCTTGTTCAATTAGAGCAAGAACTTCAACGAGCACGTCAGCAGGTGTAAGAAGTATTGGATTTCTGGTTGATGTTTTATGTGCAGATAATTTGATTTTGTTTTCTAACTTTGTTTGTTTCATTGTAGGGTATACTTATTGGGACTGAAGGGAATCAAGGTCATTTGGCTGTGGGAAATGGTACCTATAAAAAGAAACATTTCTTGAACATTATTTCCTGCAGTAGCCAAAACATAATGCTTATATTGGTTTCTTGCATTCTCTTAAATTTAAGTTTGGTAGACAAATGGTGTATAGATTATAATCCACTTGTATTGTAGGCATCACTGCTCTCAAAATTTCAATTTCTTAGATTCCTTAGAAAATAGATTACAACTATTCTAATGATATCCATGTGATAAATGGACTTTGCTTAACTAGCATACTAGTTATAGGTGTTTTTATCGGACTGAATGTTTCGCAAAGTTCTTGATTCCATTATTGTTGGATTCATGTCTTATTGGTATTGTATCTCTTTTGAATCTCTTTCGAAATATCCATCCGTTATTAACTAATCTCTTGTATTCATTCATGGATATACTGTTTGACAGTGCTTGTAATCCAAAGTGGAGGAACATCTTAATAGACAATATTGTTTTGGAGTAGTTTACTGCATAGAAATACCTGCAGCTGAATAAATAGTATATTGAGGTCACCATTCTTTTTATGGCCAAAAGATCAAAGATTGCTTCTATTTGTTAACACATGGAGTTGAGGTTCATTTGGTGCATGTTGTGTGATTGATATATTAAAGTGTGATTGATGATATTTTATTGAATATATAGGTGCCTTGGCATTTGACATGGAATATGCTCACTGGGTTGATGAACACCAACATTTGCTCAATGATCTAAGATTGGCTGTAAATTCTCAAATGAGTGATGATGAGTTACACATCCTTGTTGAAGGTGTCAGGGTACATTATAATGAGTTATTTACGTTAAAGAGAATAGGAGCAAAGGCTGATATATTTCACATACTTCATGGAACGTGGAAAACTCCAGTGGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCGTCTGAACTGCTAAAGGTGATTGACCAATTTAGTTTTTTCATTTCATTTGTGCTCACATGTGTCTAAATACTTTCTTATTCAATTCCATTTGCTGTCTTTTGAGATTCAGATCATCAAAGACCACCTTGAGCCATTGACAGAGCAGCAGTTGTTGGACATTTGTAATTTGCAAAAATCTTCTCTCCAGTCTGAGGATGCTTTAGAAAAAGGTATGGAAGCGTTGGAACAATATCTTGTGGAAACACTTTCCTCCACCTCCCTTGGACCCACTGGTAATGGAAATGTTGCTGATTACATGGACCAAATGGCTCTTGCAATGGCCAAGCTTGGTGAACTAGAAGGTCTCCTTCACCAGGTAAGAAAAACTAACTTTGTGGAACTAAATTTGATCAGAACTTCAAACCCATCTTCCATTTTCTACTTCTTACTAAATGAAAAATTTTCTTAAAGATATTAAATGGACTTCTGTTTTCATTTACTACTTTTTGAATGGATTGTCTCATGTGGAAACTTTTTATCTTGTTTCATAATTGTAAGTTATTTTTCTCTACTTTCCTTCTATCAGAAAAAAGAAAGAAAAACATTCACCAGCACCATCAACATGATGAGATTCCTAAGTTTATACAAATAGTGTTCTGAGTATGTTTTATGTTCTTAGGCTGATCTCTTGAAGCAACATTATCTTCGACAGTTGCAACGAATTTTGACAGTACGCCAAACCGCCAGGGCATTTCTTGTCCAAAATGATTTCATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCACGCCCTAGAGAATAA