Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14638 LG3 50606982 50608551 PREDICTED: zinc finger protein WIP6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root development, shoot system development, cotyledon vascular tissue pattern formation, cotyledon vascular tissue pattern formation, shoot system development, anatomical structure development, root development, leaf vascular tissue pattern formation, cotyledon vascular tissue pattern formation, cotyledon vascular tissue pattern formation, cotyledon vascular tissue pattern formation, regulation of gene expression, phloem or xylem histogenesis
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 50606992 missense_variant p.Gly313Asp
A/C 50606997 synonymous_variant p.Val311Val
G/A 50607012 synonymous_variant p.Asn306Asn
A/G 50607024 synonymous_variant p.Asp302Asp
A/G 50607027 synonymous_variant p.Asp301Asp
A/T 50607042 missense_variant p.Phe296Leu
A/G 50607054 synonymous_variant p.Asp292Asp
A/T 50607057 missense_variant p.Asp291Glu
C/G 50607060 missense_variant p.Glu290Asp
C/T 50607064 missense_variant p.Gly289Asp
C/A 50607065 missense_variant p.Gly289Cys
A/T 50607075 missense_variant p.Asp285Glu
G/A 50607089 stop_gained p.Gln281*
C/T 50607104 missense_variant p.Val276Ile
G/T 50607106 missense_variant p.Thr275Asn
G/T 50607108 missense_variant p.His274Gln
G/A 50607137 missense_variant p.Arg265Cys
G/A 50607168 synonymous_variant p.Phe254Phe
C/T 50607178 missense_variant p.Gly251Asp
A/G 50607180 synonymous_variant p.Cys250Cys
C/T 50607205 missense_variant p.Cys242Tyr
G/A 50607207 synonymous_variant p.Asn241Asn
C/T 50607215 missense_variant p.Glu239Lys
C/G 50607230 missense_variant p.Asp234His
C/T 50607231 synonymous_variant p.Gly233Gly
G/A 50607241 missense_variant p.Ala230Val
T/C 50607249 synonymous_variant p.Lys227Lys
G/A 50607280 missense_variant p.Ala217Val
C/A 50607422 stop_gained p.Gly170*
A/G 50607654 intron_variant
A/T 50607675 intron_variant
G/A 50607776 intron_variant
A/T 50607780 intron_variant
G/T 50607819 intron_variant
A/T 50607835 intron_variant
A/T 50607877 intron_variant
T/C 50608093 splice_region_variant&intron_variant
C/T 50608278 missense_variant p.Ala92Thr
G/T 50608390 synonymous_variant p.Ser54Ser
T/C 50608508 missense_variant p.Asn15Ser
C/T 50608546 synonymous_variant p.Gln2Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14638.1
MQTHPFSYISSCPGNTAFLEPHHHHQEPVDEASISLSLGPPGQLHHHPKGTSSSSSSSNLPSTLHHYQHNPTSDDQRGVTVALHIGLPNPTASPNSPITTTTTTTKPDLHLASAPTQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQIGEDDLFGEDDEEEFDLEDDDEGYNSNEVVFGFN*


CDS Sequence:
>Vu_14638.1
ATGCAGACTCACCCTTTCTCCTACATATCTTCCTGTCCTGGTAATACTGCCTTCTTGGAACCTCATCATCATCATCAAGAACCTGTGGATGAGGCTTCCATCTCCCTCTCTCTTGGCCCTCCCGGCCAACTGCACCACCACCCCAAAGGCACTTCCTCCTCCTCCTCCTCCTCAAACCTCCCTTCCACTCTTCACCATTATCAGCATAACCCTACCTCTGATGACCAGAGAGGCGTAACTGTGGCCCTTCACATTGGCCTTCCCAATCCCACCGCTTCACCCAACAGTCCTATCACCACCACCACCACCACCACCAAGCCTGATCTTCATTTGGCTTCTGCTCCCACTCAGGGCCAGTACTGGATCCCTTCTCCGGCTCAAATCCTCATCGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGTTCACAATATAGGAAAGGACCTGAGTCACTGAGAGGAGCAAAACCAGCTTCTTCGATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAAAACAACATAGACCATCCAAGGTCAAGGCCATTGAAGGACTTCAGGACTCTTCAGACTCATTACAAGAGGAAGCACGGAGCAAAGCCTTTTGGGTGCAGAAAGTGTGGCAAACCTTTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAAAACTGTGGTAAGCTTTGGTTCTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGCTCCACACACTGTCGAGAGTTGTGATCAGATTGGGGAGGATGACTTGTTCGGTGAGGATGATGAAGAGGAGTTTGATTTAGAAGATGATGATGAAGGTTATAACAGTAATGAAGTGGTTTTTGGTTTTAATTAA


Promoter Sequence:
>Vu_14638::LG3:50608551-50610551(-)
ATTGAACTTCACCCTTTGCTTTCCTGCACACTCTAGGGCTATCAAAAAGGACTCCATTTTAGGGTCGAAGATATCAGAAATAGAAAGCAACATGATCATAAAAAGAGACAACAGAATTCAAAAACAATAAACCTTAGGGGAAAAAGTCAGTACATATGTGTATATTTTTTTTTCTTTTCATTAAAACACACAAATGTTACTATGATATTTTTGAAAAAAAAAGATATATTTAGATTCATTTGACACTACTCTTTCTTATTTTTTACTTTCCTCTTTCTTGAAAAAATACAGAAATTTATATTTTTATTACCATTTTAGCCAAATGAAGGTAAAAGTGTGTCATAATACAATTATTCTATTTTTTTAATGCATATAAATTTTGTAAATATTTGTGAGAGCTTTGCTTCTTATATTTTTACATAAGCAGTTTCTCCAGTTATTTTAAACTTTTTTTATGATTTCAATAAGTATAAAATATATTGAAGATAAGATTGATACAAATTTTAAATTTTGTAAGGTTAAATTTAAAACTTCACTTTTTATGTAAAATCTATTTTAATAAAGTTTTTTATTTGTTAGGTTTCCATTTAGTATCAAAGCACCCACATATATCACATTTGCTGTGTATACACTTTTGCACGAGAGAGTGTTTTAAAGATTTCTTATTCAATAAAGACAACACTATATTAGATCAACTAGAAATAATGCATTAAATGTTGAAAATTTTCATTTAGTAACTTATTATCATTAAGGAAAACGTTGAAATTGTTGCCGTGTATAGGATGAAGTAAAATGTAGATAATGGAAAGTAAATAAAGGAACTGAGAAAAACTAAAAATATATATGGCAAATTATGGTATAGAGAAAGTTGGATATAAATTATTGTTTTGTACATTAAAATCAACTCATTTTGACATTACTCCCATGATTTTTGTTCACACAAAAGAACTTTAATGAAATGTTTCATATGCCGCCAAAACATATATTAATGTGTTTTGACTTAAGAACAAAAGTAGCGTGTTTGATGTTTTTTTTTTCTATGTGAAGTTCTTTGATATTTGATTTTCTATGTAAATGTTTAGGAAGATAAAAGAAACCGGTACTGTTGTAGTTAAAAAGAAGCAGAAGGAAAAAAGAGTAATAAGAAGATTTTAGAGAGTTGTACATAGGCTTTTGAGAATATAATGTTGATGGTAGCATGAAACACTAATATATATGAGACAGAGAGAGAGAAAGGAAGAGGTTATGGCAGTGCTGCTACTATAGTGTCGTATATTGGTGCGATATTCTATGCATTGCATCCTCCTTTGCCTCATTGCTCCTCTCACACTTTCCTCCTTTGCCGGTGCTGTGTCTCCTCTATTCCCAAACACGCCAAAATGCATCATATCACCATTTTTCCTTCATTCCACGTACGCATACACACTCATGCCACTCCAACACAGTTTTATACAAACTTTTATTCATGATTAATTAACTTTTATACAAAACAAAACACTCTCTGATCATTTTTAAACCAACTTTTTTCACTCGCATTTTTAATTTGTTTATAGAACTCAGAAAAAAAAAAGGTTCAAAACCAGCTGGATTGGTTAGTGTTGATGTTGATTTTAGATGTGTACATTGCAATGTTTTAGGAAAAAGTCTGTGATATCTATTTTAATTACAGTGTCAAAGCTTTTAAGGATGTCTGTGATTACTGCATGACCACGTTTTATCTGCAGCTTTTCACATGAACATTATAAAACTTGGTATATATTATAAGCTGTTTTCTTGATTAGAATAACTGTATTTCAATGTTGAAAATGCAAGAAGCCAAAGTTAACATCCTCGAGATTTGTTTATTTATTGCCTCTCTCGTCCCCACTTACATTCTCACTCACAAAACCCTCTCTCCCTCTCTATTCTACTCTCTCCTACCTAACCACCACCTTCTTCTCTCACCATATCATACAATAACATTAAGACACACCATCAACCATTTTCTCAAAGATCAAACC


Gene Sequence:
>Vu_14638(-)
ATGCAGACTCACCCTTTCTCCTACATATCTTCCTGTCCTGGTAATACTGCCTTCTTGGAACCTCATCATCATCATCAAGAACCTGTGGATGAGGCTTCCATCTCCCTCTCTCTTGGCCCTCCCGGCCAACTGCACCACCACCCCAAAGGCACTTCCTCCTCCTCCTCCTCCTCAAACCTCCCTTCCACTCTTCACCATTATCAGCATAACCCTACCTCTGATGACCAGAGAGGCGTAACTGTGGCCCTTCACATTGGCCTTCCCAATCCCACCGCTTCACCCAACAGTCCTATCACCACCACCACCACCACCACCAAGCCTGATCTTCATTTGGCTTCTGCTCCCACTCAGGGCCAGTACTGGATCCCTTCTCCGGCTCAAATCCTCATCGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGGTGATAAATCAACCGCATCTGAAAAAAATAAAAACAAAAAATCAGTCAAAAATGTGTAGCTATCAACTCCATCATAATTTCATGATCAATTTTAAAGCCTAGGTGAAAATGATTTGAAAGAAAGTATGTAAAAGAAAAACCACCACCTCTTTTTTATCAGAGATTTATATTACACTATCTCTATTTAACGTTTGAATTTGACACCATTAGTCATCCTTCTTTGAATGCTTCTGCTTTCTTTCTTACAGAAAATAGCTGTGATTTGTTTCAAAATCACTACTCTTTTGTTATCTCTAGTTCTTCCCTTTCCATCACCTTTAATCATGACTTTGTGATTTAATTAACCCTTTCACAACCCAAAAGAATGCCGAACATTATTCATGACCAAATATCTATTGTTTTTCTCTTCTTATCTTATCTTCCTTATATTTTCACCTCAATCCATCCCATTTTTTGTGTACCTTTGTCATCCCTCTTACCAAAATACATAACAAAAAATATTTTTGTGAGCACGAATATATTTTCATTGCTTTCGCAGTTTATTGCTTTTGTTTCATGGTCGAGTGGTGCATTAATCAATAGTATGTAATACAAATTTCCCTAATGCATTGTAACAAAGTAGATGCACATGTGGGGACACGGTTCACAATATAGGAAAGGACCTGAGTCACTGAGAGGAGCAAAACCAGCTTCTTCGATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAAAACAACATAGACCATCCAAGGTCAAGGCCATTGAAGGACTTCAGGACTCTTCAGACTCATTACAAGAGGAAGCACGGAGCAAAGCCTTTTGGGTGCAGAAAGTGTGGCAAACCTTTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAAAACTGTGGTAAGCTTTGGTTCTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGCTCCACACACTGTCGAGAGTTGTGATCAGATTGGGGAGGATGACTTGTTCGGTGAGGATGATGAAGAGGAGTTTGATTTAGAAGATGATGATGAAGGTTATAACAGTAATGAAGTGGTTTTTGGTTTTAATTAA