Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14640 LG3 50634214 50636350 PREDICTED: myb family transcription factor EFM-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to hypoxia, regulation of transcription, DNA-templated, cellular response to hypoxia, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cellular response to phosphate starvation, cellular response to hypoxia, cellular response to phosphate starvation, regulation of transcription, DNA-templated, cellular response to phosphate starvation, cellular response to hypoxia, cellular response to phosphate starvation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, mitochondrion
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA binding, protein binding, DNA binding
SNP Position Effect Amino acid change
G/A 50634389 downstream_gene_variant
T/C 50634443 downstream_gene_variant
T/C 50634468 downstream_gene_variant
G/A 50634662 stop_retained_variant p.Ter97Ter
C/T 50634772 stop_gained p.Gln134*
T/C 50634809 downstream_gene_variant
A/G 50634832 downstream_gene_variant
C/T 50635008 synonymous_variant p.Ile176Ile
T/A 50635182 splice_donor_variant&intron_variant
A/G 50635558 downstream_gene_variant
T/A 50635560 downstream_gene_variant
C/A 50635562 downstream_gene_variant
A/T 50635612 downstream_gene_variant
A/G 50635665 downstream_gene_variant
T/A 50635746 downstream_gene_variant
G/C 50635803 downstream_gene_variant
A/C 50635845 downstream_gene_variant
A/C 50636118 missense_variant p.Gln290Pro
G/C 50636119 missense_variant p.Gln290His
G/A 50636207 missense_variant p.Val320Met
A/T 50636298 missense_variant p.Gln350Leu
T/C 50636306 missense_variant p.Ser353Pro
T/C 50636311 synonymous_variant p.Pro354Pro
A/G 50636327 missense_variant p.Thr360Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14640.1
MLPRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKGASQDSVEEEEEEENEDEDEQHSHQHRKTTSDKKKSDWLRSVQLWNSNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKSAIVNGKADNYASAIGKTPSSPPVPATSSTGPITIDSRKEEKGQTQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNGNPQAAPLFLVGKIFVQPPEYGAVATSTASGGELTTVTAPTGIYAPVAAHPPLVTNTSIMNHSRSQERPNNNNNSAQSNSPASSSSTHTITTT*


CDS Sequence:
>Vu_14640.1
ATGCTTCCCCGGAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATTCAAGTTTTCCCTAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAGGGGTGCAGGCAGCAATTGTCTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAGGAGCATCTCAAGATTCTGTTGAAGAAGAGGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCAGCACAGGAAAACCACTTCTGATAAAAAGAAATCAGATTGGCTTAGATCCGTTCAGTTGTGGAATTCCAATCCCCCTCCTACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTAAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGCTATAGTTAACGGAAAGGCTGATAACTATGCATCAGCAATCGGTAAAACACCGTCTTCACCACCAGTTCCTGCTACAAGTTCCACAGGACCAATTACAATAGACAGCAGAAAAGAGGAGAAAGGACAGACTCAGAGAAAGCAACGACGATGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCACTTGCAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATACACAACAACGGAAATCCACAAGCAGCACCTTTGTTTCTTGTGGGGAAAATTTTTGTGCAGCCCCCAGAATATGGTGCAGTAGCTACCTCAACAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCACCTGTGGCTGCACATCCTCCACTTGTCACAAACACATCAATAATGAACCATTCACGTTCACAAGAAAGGCCTAATAATAATAATAATAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCCACACACACAATCACAACTACTTAA


Promoter Sequence:
>Vu_14640::LG3:50632214-50634214(+)
AGGGTAAACGCACAATTTGCTCTGCAGGTTTCATCACCCAATTTGTATTTCGAGTTCTTCCAAAATGTTTATCCCCAAATCACTGCCATTGCCACGTCAACTGTCACGTTATGAAGGTAAACAACCACGTTGCACAAATCACTCCACGCTGTCAGCTGGATCGTTAAATATTTAACGCCGTGACCAAAAAGGATTTAATTGGACACTTTTTTCACAACTTGGGACCACATTGAACTTTTTAAAAAAGGTAGGACGAACTTGAACATTTTCCTTATAAAGAGGGATAAAAAGGGGTATTAAGCCAAATTTCAATTAACCTTAATTTTAAAATCTTTCAGAAAAATCCCAATTTTTAAAATGTTTCATTTAGAAAATGCCACGTGATTAATAAAAACCACGTATATCTTTCTCTGCAAGCCACGTTTGAAATAATATCCACTCCACCTTCACACTTTATAAAAATTTAACCGAGTTAACTTGATTGAATGGCAGGAACTCAATTGAATTAATTTTTCAATAAAAAAGACTAAATTGACAAAAATGAAAAAACGAAAATGTAACTTAAAAAAAAAAAATAGAAAACTTCGAATGAGTTTAACCTTCTTAAAATTAGGGAAGATGATAATGGAGATCACATGCATGCCGTGCATCTTTGACCTAAATTTCTCAACATTGATTACTTGAAAGATGAAGGAATTTTTCAAAATCACTAAACCCTGAATACATAAAAGGAATCAATAATTAGAATTGGGATGATGAGGAAAGAGAATATAAGAGGAAGCAGGATAGTCTTTGTTTGTTCTTATCCTATGAATAAAATGTGAGAGGCGGTGAAGAATATGAGAGAGAAGAACGCTGACGCATTTGCCAGCCCAAAATGAACTCAAAGGGAATCACACTCCAGAATATTCATAATTATACCCTCTCTTTTTCCCTTTCTTTATTTTTCCATCTTTTTCTAAAACAAAATTATACTTGGTAGTTAGAAATATATTAAATAAAAGCCAATAAAATATGTTAAAATCCAAACAAAGTTATTTTTTTCTAACCTAAAATAAATAAAGTATGTTATATATATAGTATTTATTATTATAAATATTCATATATTAACCATATATAATAACTATATCATATTTTATCAAAAATACATTCTCTTATATTAAGTCTTTTTTACTCAAAAAGATTCAACCTTTTTTTTGTTTGGAGTGTCAAAAGTACATTCTCTTATATTAAGTGTACATTAACATTTTTAAACTTTTTCAGATCTTATGATTTATCTAAAAATTTATGCTAAAAATTTCAATAATAATAAAATAGTTTAATTAAAAATATAAAATAAATTTATAATGTCATAATTCATTTCGTGTTTTCATTTCTAACACTTAAAAGCAAACCTTAAGAAAAAAACACATCATATTTGAAGTCTATTAATTCATTTTAAGGCATTAAACATTGAAAGAAAATATTAAAACATTTATTAAACTAGATAATTTTTTTTTTCTAAAATTTATTGTTCTAAAATTTATAGCATTCTTGTTCAACTTTTTTTCAGAGACCAATAAAGAAAATACACAAATGACAAAACAATGAGAGAGTGCAACATAGTGAAAAAAAAAGAAAACACAAGAGAGTGGAATATGCAAGAATATAATAAAACGCATGAAATATTCGTTTTTGTACGCGACGGCCCGACCTCGATGTTCACCTCGGTTCATCTCGACCGTCCAATCACTTTCTCTCTCTAACTTCCTATGTCTTCTCTCTCTTCAAAGTTTATTCCAAATTTTGATTCTGCTCAGATTAGATCCCATTATTACAAATTTTCTCATTGTTGGATCCGTTTTCTTTCCACGCTTTGACAAAACACCATTCCCTATATATTCCTCCTCATCCTCTTTCTCAAACTGTTTTTCTCTCACACCAACAAAATTCAAAACCCACCAACGCATAATCATCCATCGGATAGAAAAAGAGCAGAAGTTTCAAATTTTTGAGAAAAA


Gene Sequence:
>Vu_14640(+)
ATGCTTCCCCGGAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATTCAAGTTTTCCCTAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGGTAAAACCTTGAAAAAAAGCCATAATCAGATACTCTTTTGCGATGTGAACTTGAAGTTCCGGCTTCGGGTTTTTGGGTGTGTTAATTCCAGTTTTGCCATTTTTTGGATGCGAGTTTTGATTTTGTTTGTTTATTTGTCTGTGTGAATTTGATGCAGCAATTGAGGGGTGCAGGCAGCAATTGTCTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAGGAGCATCTCAAGATTCTGTTGAAGAAGAGGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCAGCACAGGAAAACCACTTCTGATAAAAAGAAATCAGATTGGCTTAGATCCGTTCAGTTGTGGAATTCCAATCCCCCTCCTACCAAAGAGGTAAAAACAAAACATAAAACACCCAAAAATTATTTTATTTAATTTACCTTTGCATTGATAATTTTCTTCAAAGATGTTCATTTTTGTTTTGTTTTGTGGGGATTTAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTAAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGCTATAGTTAACGGAAAGGCTGATAACTATGCATCAGCAATCGGTAAAACACCGTCTTCACCACCAGTTCCTGCTACAAGTTCCACAGGACCAATTACAATAGACAGCAGAAAAGAGGAGAAAGGACAGACTCAGAGAAAGCAACGACGATGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTGTGCGTATATTACTTGGAACTAGTTTTTGTTCTGTGCTATAAACAAATGTTTCAAATTTACTTGGAATTGTTTCAAATGTTTGATAATTTGGTCTTTGTTGTAGCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCACTTGCAGGTTAGTGTGTAGTTTCTTTGGTCATGTCAATTTCTTTCCCAATTTCCATGATACTGCATAATTTCCATTTTTGGTACTGTGCCAAGAATCTGAGAATTGGCTTCTAAGGCATAAATGGGGTGTTGTATTTTGTGGTTCTTCACATCACAACTTTACAAAAACATGATTTATTATTTTTAATGAGATTTATTTTCTTAATCCCTTTTTTTTTTCTGTCACTTGAAGTCTATTTATCTCAGAATTCAAAATCATTCCTAAAATATCTTATTTATTTTAGAAAAATATGGTTTGACTTCAATGTTTATAGGAATCTGTTTCAGAAATTTTGATTTTTGTCATGATAATTCTTGTCTGTCAATGATGACTTTCTTCTTCATAAATCTATGATATTTAAGGTGGAAAACAAAATTCAACAGTCATTCAAAGAATAAACACTGTAATGTTTAAAAGGGTTAAATACATGTTTTATATTTTCATAATAATATGTATAAAATGTTAGGAAATATTTTTAAAATATAGATAACAAGACTAATTTTTCATCAAAATTGAAGAGTCAGAACAGGTTGCATCATTTTGTTCAATTTTCTGTTTGAATTTTATTGAGTTTACTTTATATGTTTATGAATGATGTCTGAGATATTTTGTTGTTTTGTTCTGTTCAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATACACAACAACGGAAATCCACAAGCAGCACCTTTGTTTCTTGTGGGGAAAATTTTTGTGCAGCCCCCAGAATATGGTGCAGTAGCTACCTCAACAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCACCTGTGGCTGCACATCCTCCACTTGTCACAAACACATCAATAATGAACCATTCACGTTCACAAGAAAGGCCTAATAATAATAATAATAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCCACACACACAATCACAACTACTTAA