Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14850 LG3 53379422 53380538 PREDICTED: transcription factor MYB39-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   suberin biosynthetic process, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, suberin biosynthetic process, suberin biosynthetic process, positive regulation of fatty acid biosynthetic process, suberin biosynthetic process
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 53379469 missense_variant p.Phe284Leu
G/T 53379550 synonymous_variant p.Pro257Pro
G/T 53379551 missense_variant p.Pro257His
G/T 53379722 missense_variant p.Pro200His
G/A 53380130 intron_variant
T/G 53380132 intron_variant
T/A 53380444 missense_variant p.Tyr32Phe
A/T 53380445 missense_variant p.Tyr32Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14850.1
MGRSPCCDESGLKKGPWTPEEDQKLVNHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPNIKRGKFSKEEEQTILDLHAILGNKWSAIASHIPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDDILTGLSHLIVLANLKELLDQHHQSWEQSLARLQEEAIQLTNLQSLQQHLVQPQFTEADLNTVSSMTNSTFMMNNDIVNVSNDTSVSPSNGIGTVQLANDSTPFSHMPELKTPSSCSPWLFSCSSTTPSSPSAHVVPPVTSEVSLTNVDDNCTIWPEILLEDPFFKMIS*


CDS Sequence:
>Vu_14850.1
ATGGGAAGATCTCCATGCTGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACACCTGAGGAAGATCAGAAGCTTGTTAACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCACTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACTAACTACTTGAGACCTAACATTAAAAGAGGAAAATTTTCCAAAGAAGAAGAACAAACAATTCTTGATCTCCATGCCATCCTTGGAAACAAATGGTCCGCAATAGCAAGTCACATACCTGGTAGGACAGATAATGAAATCAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATGATATTCTCACAGGCTTGTCTCATCTCATAGTACTGGCTAACCTGAAAGAACTTTTGGATCAGCACCATCAATCATGGGAACAAAGCCTTGCAAGGCTTCAAGAAGAGGCCATCCAATTGACCAACCTCCAAAGCTTACAACAACACCTCGTGCAGCCACAATTCACTGAGGCAGATCTTAACACAGTTAGTAGTATGACAAACAGTACCTTCATGATGAACAACGACATCGTCAATGTTTCAAATGATACCAGTGTGTCACCATCTAATGGAATTGGCACTGTCCAATTGGCTAATGATTCCACCCCTTTCTCTCACATGCCTGAATTGAAAACACCATCTTCTTGTTCTCCGTGGCTTTTCTCGTGTTCAAGCACTACCCCTTCTTCTCCTTCTGCCCATGTTGTTCCACCGGTCACGTCAGAGGTTTCATTGACTAATGTGGACGACAATTGCACCATTTGGCCAGAGATCCTGCTAGAGGACCCTTTCTTCAAAATGATTTCCTAG


Promoter Sequence:
>Vu_14850::LG3:53380538-53382538(-)
CATATGTGTATCTTATAACTTGGTCTTTGTTGTTAGTGAAAAATTGAACATCTAGCATGTAAGGAGGTGTCTTAAAAAGAAGACAACCCTAGCTTGGCCACCAAGCTTATCCAAAAGCATGCATATTGACCTCCGTTCTAAAAGGTCAACTTCAAGCTCTCCATCTCTCCAAACATTCACCTCTCCTAGTTGGTTCCAAGATTAAGGCTCTCCTCCATTCTAAGTAATGATATCTTCCTCTCATTTAACATAATTTTACCCTATAAAATAAATAAATAAAAGAGTCAACATTCCAACTTAAGTTAAGTCAACTTTGATAAACAAGACAACCAAAGTCAAGTCAACAAAAATCAACTTAGGAAAAGTAAACATAAGGAATTGAAAAATAAAGACAAAGAAGTTGGGTTTGAGGTCTCCTTCTAGTCATGCTTCTAGTCACTCTCCTTGAAACGTTCTCTGTGGCTTCATGGTGAGTCATAAACTCATTATATTACTGACAAACTATCTTATCGATAAATTAAATGGCAAGTTTTCTGCCAATCTGATGATATGTTTTATATGTTAAGAGAAGATGTGTGAGAAAAATAAGAGACGAAGAAATGAATGACAAGGAGAAGGAGGAGAATTTGAAGCGAGTGGTAGTGACAATGACGCGAAGACGCAATAACAATGCTAACCAGAGTTTAAGGAGGGCGAGAAGAGGAAAAGGAGGGTAGGAAGAGGAAAAGGAGAAGAAAGAGAAGAAAAGGATTGATGACGATAATCGTGATAGTAGTGAGGAAGACGCCGATAAAAATGAAAAATAAAAGGAGAAAGAATAAGAAGAAAAATAGAAAAAAGAACAAAAAAAAGAGAGATAAGAACCCAATTGCAATTGCTACACCGAAATCTAAAAAATATTGATGAATTTCATGTTACATTGGTAAAATTGATCGATGAACACTTTAAAAACAAATTTTTAACGTTAATAATTTTTTGATTTAAATTACTGACATATTTTTTTTATTATTGACGAATTATATCGCTTAGTAATATTCCGTTTTCTTACGGTGGGATTGTGAATTTTTTGGCCTATTTAAGGAGGACACTACTCAAGGATTACCATTAACTTTTCTTTATTTTCGTCGGTTTTATGGGAATGCTAAAGAGAGTTTTTATTGTCATGTGTTTTTCAAAATTTATAATCTTAGTGAAAAACAACACCATTCCAGATTTTGCACCACATAGCATTTATTGTAGAAAAGTTACGTAACTAGTCCTTTTACGCGGATTCGTGTGTAAGTTATTATCGCAACCAACAAAGAAAACACGCTATCTTTCAGTTTCATAGGAAGAAACGATGAAGTTATAGCTCTTACTGGTAAAAATACAAGACAGAGACAGAGAAGAAACGACCAAAAAATGCATTAAAGAACCCATTAATGGCCTATAAAGTATATGAAACCAAAGTGAGTTATAGAGAGGGTAAGAAAATTAGAGAGATTGCCGCACCAACTTCTCGTCTAACTAGATCCACTGAAGGCTATAATCCCTCTTTTTCTTTTCTTTTCTTATAGCAAAATCATCAAGATTTTCGTACATGACATCACTGGATTCGTTTTGTTGCTGACGCATTGTGATGAAGCCACAGAAACTGCACGTATACAATGGTTGTTTTAAACTTTGGAGGTAGTAACTAAGAAAAATCTTTAAGGTTTCAAAAAGATCAATTCAAACTAATAATGTTACATGTTGGTTTAAAAGTAGTTTACTTCTGCAGTATCCAACCACTAATGGGTTGACGAAGGTTTTATATGTAATTTTAGCTAAGAAAATGAACAGTTGTTTTAGGTAAATGATGAGTTTCAAACAACCTTGTGGGTCACAAACACGCCATATATTCGCCCTATAAATAGGAAGCATCTACCCCATATCCCACATTAGAATTTGAAAGAAGTGACTAAGTTTCCCTTATTGGAAGGATAGGACAAAGAAGAGAGACATACCATAAAATAATAGAC


Gene Sequence:
>Vu_14850(-)
ATGGGAAGATCTCCATGCTGTGATGAAAGTGGTTTGAAGAAGGGTCCTTGGACACCTGAGGAAGATCAGAAGCTTGTTAACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCACTTCCAAAACTTGCAGGTAATTAATAATACTATAATGATTTTGAATGCATTGATCACAGTGTCATGAGACTCATGATGAATACTTTCTCTTTTTCAAGTTCTCTAACATAGTTAATGAGAGGTGATCATTTCTATCTGGTAACAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACTAACTACTTGAGACCTAACATTAAAAGAGGAAAATTTTCCAAAGAAGAAGAACAAACAATTCTTGATCTCCATGCCATCCTTGGAAACAAGTAATTATATTCATAACTCTTATGGCATTTATATTCACAATTCTTGATTTTGTAATTCAATTTTTTTTTCTCCATTCCACACTAGATGGTCCGCAATAGCAAGTCACATACCTGGTAGGACAGATAATGAAATCAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATGATATTCTCACAGGCTTGTCTCATCTCATAGTACTGGCTAACCTGAAAGAACTTTTGGATCAGCACCATCAATCATGGGAACAAAGCCTTGCAAGGCTTCAAGAAGAGGCCATCCAATTGACCAACCTCCAAAGCTTACAACAACACCTCGTGCAGCCACAATTCACTGAGGCAGATCTTAACACAGTTAGTAGTATGACAAACAGTACCTTCATGATGAACAACGACATCGTCAATGTTTCAAATGATACCAGTGTGTCACCATCTAATGGAATTGGCACTGTCCAATTGGCTAATGATTCCACCCCTTTCTCTCACATGCCTGAATTGAAAACACCATCTTCTTGTTCTCCGTGGCTTTTCTCGTGTTCAAGCACTACCCCTTCTTCTCCTTCTGCCCATGTTGTTCCACCGGTCACGTCAGAGGTTTCATTGACTAATGTGGACGACAATTGCACCATTTGGCCAGAGATCCTGCTAGAGGACCCTTTCTTCAAAATGATTTCCTAG