Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14990 LG3 55572264 55573217 TMV resistance protein N
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to oxidative stress, indole-containing compound metabolic process, cellular response to organic cyclic compound, jasmonic acid mediated signaling pathway, cellular response to organic cyclic compound, response to abscisic acid, jasmonic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, small molecule metabolic process, defense response to other organism, defense response to other organism, regulation of signal transduction, shoot system development, regulation of signal transduction, signal transduction, response to abscisic acid, jasmonic acid mediated signaling pathway, shoot system development, response to water deprivation, regulation of defense response, response to water deprivation, indole-containing compound metabolic process, regulation of signal transduction, response to water deprivation, response to chitin, defense response to other organism
Cellular Component   located in   cytoplasm
SNP Position Effect Amino acid change
T/A 55572282 missense_variant p.Gln255Leu
G/A 55572321 missense_variant p.Pro242Leu
G/T 55572332 missense_variant p.Phe238Leu
C/G 55572398 stop_lost p.Ter216Tyrext*?
G/A 55572461 synonymous_variant p.Ser195Ser
A/G 55572492 missense_variant p.Met185Thr
A/G 55572522 missense_variant p.Met175Thr
G/C 55572571 upstream_gene_variant
G/A 55572632 upstream_gene_variant
G/T,* 55572664 upstream_gene_variant
G/A 55573119 synonymous_variant p.Thr33Thr
T/C 55573168 missense_variant p.His17Arg
T/C 55573171 missense_variant p.Lys16Arg
T/A 55573177 missense_variant p.Gln14Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14990.1
MAWSSSSSSGTAPQEKHDVFLSFRGEDTRYTFTGHLHASLTRLDVNTYIDYNLQRGEEISSSLLKAIEDAKLSVIVFSKNYGNSKWCLDELVKILECRRMRGQIVLPVFYDIDPSHVRNQTGTYAEAFEKHERNLQGQMHKVQKWREALKEAANFSGWDCSVTRMESEVIDKIANDVLEKLNRVYVGDLDQQIAKLEKLAELQYLFYTKIITVENLEKHNATVQRLTELKMERSVRMLRLSPDMLSHLNDSKRNSNYFDF*


CDS Sequence:
>Vu_14990.1
ATGGCATGGTCAAGCTCTTCTTCCTCCGGAACAGCCCCTCAGGAAAAGCACGACGTCTTCCTCAGCTTCAGAGGCGAAGACACGCGCTACACTTTCACCGGCCACCTTCATGCCTCCTTGACCAGACTCGACGTCAACACATACATTGACTACAACCTTCAGAGAGGAGAAGAGATATCGTCCTCTCTTCTTAAGGCCATCGAGGACGCAAAACTCTCTGTCATCGTTTTCTCCAAAAACTACGGAAACTCCAAGTGGTGTTTGGATGAGCTTGTGAAAATACTCGAATGTCGGAGGATGAGGGGGCAGATTGTGTTGCCCGTTTTCTATGACATAGATCCCTCCCACGTGCGCAACCAGACTGGTACTTATGCAGAAGCGTTTGAGAAACATGAGAGAAATTTGCAGGGTCAGATGCATAAGGTGCAGAAATGGAGAGAAGCCCTAAAGGAAGCTGCTAATTTTTCTGGTTGGGATTGCTCTGTCACCAGGATGGAATCTGAAGTCATCGATAAAATAGCAAATGATGTGTTGGAAAAGCTGAATCGAGTGTATGTTGGCGACCTAGATCAGCAGATTGCAAAGCTAGAGAAACTTGCAGAACTCCAATATCTGTTTTATACAAAGATAATTACCGTAGAAAACCTAGAAAAACATAACGCAACAGTTCAACGTCTCACGGAACTTAAAATGGAGAGAAGTGTGCGCATGCTTCGCTTGTCACCCGATATGCTTTCACATTTGAACGATTCAAAAAGAAATTCAAATTATTTCGACTTTTAA


Promoter Sequence:
>Vu_14990::LG3:55573217-55575217(-)
TATTTCGAAGTTAGGATATGGAAAATATATATATCCATTAAAAGTAAAGCAGATTTATGATTTTTACAACAAATTTGGCTTATATATTACGAAAATCTTTTCTACACAAATTTAGCTTATATATATGACGAGAATGGAGAGATTGTAAAAAAATTATGAAAATAAATAAGTTGTATAGTTCTTCACACTACTTCAATTTTATGTAATCGATTTTTAATTTTCGTAATTGATTAGAATCTGTTGAAGTTGTGAGAGATATAACGACTTCAACTTTTCAAATATGTTAGAGCTGAAGTCGTTTAAAAAGTGCAAAAATTGTGTGAGAACTGCACAACTAGTCTATTTTCGTACTTTTTTTAAATCTGTTTATTCTCATAATATATGAGACAAATTTATCTATTCTTATAAAATAACTCAAATTTATAAGTTGATGCAAATTTTATTTTAGAAGTCGATTTTGATAAGACTGAATTAGATTTAAAATTCAAAGGTAATATGAAACATTATCTTTTTTTTATTTGATTATTACAATATGCTAAAAAAAAAGATTTATGCTTTACCCATGAATTCAATGCGCGCGTTATCTCTTTAGGTTTCTTTATGCACGTATAATAACATTATTTTTTTTTATAGATAGTGAGTCTTCTTAAGCAAAGCTAGTTTTGTTAAGCAAGACATGAATTAGACTTTACCTAAAGATTACGTTAGTGGAAAGAGATGTCATTAATCTCTTGTGTTTTCTTAATTATCATGTTGGCTGGATAATCACTTGATCCCACAAGACTAATTAAGATTAGATAATGGCTCACTTCTAAACCTAAGTTCATCCATAGTTTATATGTCATCTAAAGCTACCTAACTAACTTGCACTTAATCAATCCTATATTAAGCGAACAGATGATGAGTAAATAAAATAAGACCGAACAATACAGACTCATGGTAATCCTATGCAACATATATATATATATATATATTACATTATCTGTAGTTTCATTCCTCCATAAAATTTTCCATAAAAAAAACTTCCATAAATTAGTTTAACCTTTGAAATTTGTTTCAATGATGAAATGTTTAAAATGGATGACGATTTAGAATGATTTTCATTCACAGTACTTTATTTCGAAGACCTAAAATTCAAATTATTCGAGCTTTTTAGTCTCTAAAGTGATTATAATTAGTAGTTAATAACGATGATTATACATCACTAAAACATGCATACTATAAAAATAAACGCATATAAGGTATTTTTAATTTAGAGAGACTATTAAAATAAAAATAATTCTTTCGTTAGAGAGATAAAGAGTAATTTTACCATTTAATAAATAATATACTTTTTCTCGGCTTCACTAGAGAGATAAAGAGTAATTTTATCATTTAATAAATAGTGTACTTTTTCTCGGCAAAGGCAAAATATAATAAATATAAGAAAAATGACAATGATACGTTAATACAATTTTTTTTACAACATTTTAATACAATACATGTATTATTCTTTTTATTAAATTTAAAATATATTAATATAATATCAAATAAATAATAAATTAGTAAAAAAGTAACACACACTGTATTACAATGTTGTTAAAAAGAAAATTGGTTGAAGAAAAATAAGGACGAGTGATTTAAAAATATGTGACTTTAGTCGAACTTTATTTTTTTAATTTATTTTCACTGTTTTTTTCTCTGTTTGACTTAAATGAAGTAGTTATTTTGGTAGAATTTTTGAAATAAAAATGAAAGCGATAAATGAGGTTGAGAATATAGCGTAGCCGTTTTCCCACAGACTTTCACGCGTAAAACCATTGAAATTTTGAATCGTGGGGCACAGCTTAGAAAGAGTGTGATGAGTGGTAGGAAGGTTCATTCTGGTTTCTGTAATAAGTATCTTTGATGGCAGAAGAAGCTATAAGAATAGGGAGTTGACATTCACATACTCACATATTCAGATATACACAGAAAGTGTTAAACCCTTTAACCAAAAACACCCACCAAGTCCATTATCC


Gene Sequence:
>Vu_14990(-)
ATGGCATGGTCAAGCTCTTCTTCCTCCGGAACAGCCCCTCAGGAAAAGCACGACGTCTTCCTCAGCTTCAGAGGCGAAGACACGCGCTACACTTTCACCGGCCACCTTCATGCCTCCTTGACCAGACTCGACGTCAACACATACATTGACTACAACCTTCAGAGAGGAGAAGAGATATCGTCCTCTCTTCTTAAGGCCATCGAGGACGCAAAACTCTCTGTCATCGTTTTCTCCAAAAACTACGGAAACTCCAAGTGGTGTTTGGATGAGCTTGTGAAAATACTCGAATGTCGGAGGATGAGGGGGCAGATTGTGTTGCCCGTTTTCTATGACATAGATCCCTCCCACGTGCGCAACCAGACTGGTACTTATGCAGAAGCGTTTGAGAAACATGAGAGAAATTTGCAGGGTCAGATGCATAAGGTGCAGAAATGGAGAGAAGCCCTAAAGGAAGCTGCTAATTTTTCTGGTTGGGATTGCTCTGTCACCAGGTAATTAATCTATGTCAAAGATAATCAAAATCTTAGTTAAGTTCACGCTGTTACTGTTAAGCCTTATTCATCTGTTCATGCTGTTACTTTTAAGCCTTATTCATCTCTTTGGCTTAAGGTAGATTGATTTATCCTAAGCATGATCAGAATATTATCATTATATAAGTGCAGGATGGAATCTGAAGTCATCGATAAAATAGCAAATGATGTGTTGGAAAAGCTGAATCGAGTGTATGTTGGCGACCTAGATCAGCAGATTGCAAAGCTAGAGAAACTTGCAGAACTCCAATATCTGTTTTATACAAAGATAATTACCGTAGAAAACCTAGAAAAACATAACGCAACAGTTCAACGTCTCACGGAACTTAAAATGGAGAGAAGTGTGCGCATGCTTCGCTTGTCACCCGATATGCTTTCACATTTGAACGATTCAAAAAGAAATTCAAATTATTTCGACTTTTAA