Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15430 LG4 7885149 7888397 PREDICTED: leucine-rich repeat receptor-like protein CLAVATA2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   maintenance of root meristem identity, anatomical structure morphogenesis, regulation of flower development, regulation of cell differentiation, maintenance of root meristem identity, signal transduction, regulation of meristem growth, regulation of cell differentiation, phloem development, meristem development, regulation of meristem growth, regulation of flower development, regulation of flower development, regulation of growth, regulation of flower development, regulation of flower development
Cellular Component   located in   plasma membrane, plasma membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane, plasma membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane, membrane, plasma membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane
Molecular Function   enables   peptide receptor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
T/C 7885350 3_prime_UTR_variant
A/T 7885412 3_prime_UTR_variant
T/G 7885662 3_prime_UTR_variant
G/A 7885736 3_prime_UTR_variant
A/T,G 7886369 missense_variant p.Asp561Glu
C/G 7886371 missense_variant p.Asp561His
T/A 7886574 missense_variant p.Glu493Val
C/A 7886766 missense_variant p.Arg429Met
A/C 7887444 missense_variant p.Leu203Arg
G/T 7887445 missense_variant p.Leu203Ile
A/T 7887757 missense_variant p.Leu99Met
C/T 7887776 synonymous_variant p.Ser92Ser
G/A 7888012 synonymous_variant p.Leu14Leu
G/T 7888112 5_prime_UTR_variant
T/G 7888214 5_prime_UTR_variant
C/A 7888328 5_prime_UTR_variant
T/G 7888329 5_prime_UTR_variant
C/T 7888339 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15430.1
MLMVMAHTTPLHRLWHPFTLLSVILLCATPSLSIDVFLQDKASLLLFRSRLQDPYQSLSNWAGSNCTSWTGITCDNRTGRVLSINLTSMSLSGQIHPSLCQLPYLSKVGLSHNNFTSLLPECFGNLLNLRVIDLSYNRFHGGIPDSFMRLRHLTELVLSGNPGLGGPLPAWIGNFSTNLERLHLGVCSFRGGIPESLLYLKSLKYLDLGNNLLSGNLVGFRQPLVVLNLASNQFAGTLPCFSASVQSLTVLNLSNNSIVGGLPACIASLQALTHLNLSGNHLKYRIYPRLVFSLKLLVLDLSYNDFSGPIPSQIAETSEKLLGLVLLDLSHNQFSGEIPVKITELKTLEALFLSHNILSGEIPARIGNLTYLQVIDFSHNALSGTIPFSIVGCFQLYALILNNNNLSGVIQPEFDALDTLRILDISNNRFSGTIPLTLAGCKSLEIVDFSSNELSGSLNDAITKWSNLRYLSLAQNKFSGNLPSWLFTFDAIETMDFSHNKFSGFIPDINFKGSLIFNTRNVTVKEPLVAARNLQLRFSAVVSDSNQLGFTYHLSSMVGIDLSSNLLHGEIPRGLFGLAGLEYLNFSCNFLYGQLPGLQKMQSLKALDLSHNSLSGHIPGNISSLQDLSILNLSYNCFSGYVPQKQGYGKFPGAFAGNPDLCMESSSGVCDDGRTQSVQGSSFREDRMEGPISLGIFFISAFVSFDFGVVVLFCSARARNYILQTKV*


CDS Sequence:
>Vu_15430.1
ATGCTGATGGTGATGGCACACACCACACCCCTGCACCGTCTATGGCACCCCTTCACTCTCCTCTCTGTGATTCTTCTCTGTGCAACCCCTTCACTCTCAATTGATGTTTTCCTACAAGATAAAGCCTCTCTTCTTCTGTTCAGGTCAAGACTGCAAGACCCTTACCAGAGTTTGTCCAACTGGGCAGGCTCTAACTGCACTTCATGGACTGGAATCACCTGTGACAACAGAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAGCCTTTCGGGCCAAATCCACCCCAGTTTGTGCCAGCTTCCGTACCTCAGCAAGGTGGGGTTGTCCCACAACAACTTCACTTCCCTTCTTCCTGAATGTTTTGGAAATTTGCTCAACCTAAGAGTAATTGATCTCAGCTATAACAGGTTTCACGGTGGGATACCAGACTCTTTCATGAGGCTCAGGCACCTCACTGAGCTTGTTTTGAGTGGGAACCCCGGTTTGGGTGGTCCACTGCCTGCTTGGATTGGGAACTTCTCTACAAATCTGGAAAGGCTACATCTTGGTGTGTGTTCATTCCGTGGGGGCATACCTGAGAGCCTTCTTTACTTGAAGTCCCTCAAGTATTTGGACCTTGGGAACAATCTCTTGTCTGGTAATCTGGTTGGTTTTCGGCAGCCTTTGGTTGTGCTTAATCTTGCTTCCAATCAGTTTGCTGGTACTTTGCCTTGCTTTTCAGCTTCAGTTCAGTCTCTGACTGTGTTGAATTTGTCTAATAATTCTATTGTTGGGGGACTGCCTGCTTGTATTGCTTCCTTGCAAGCTTTGACTCATTTGAACCTGTCAGGGAACCATTTGAAGTATAGAATATATCCTAGGCTTGTGTTTTCATTGAAACTTCTTGTTTTGGACTTGAGTTATAATGATTTTTCCGGTCCTATTCCCAGTCAAATTGCTGAGACTTCCGAGAAACTTCTTGGCCTTGTTCTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAACTTTGGAGGCCTTGTTTCTCTCTCACAATATTCTCTCTGGAGAAATTCCTGCCAGAATTGGAAATTTAACCTATCTTCAGGTCATTGATTTCTCACACAACGCTTTGTCTGGTACCATTCCATTCAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTGAATAACAACAATCTTTCTGGGGTAATTCAACCGGAGTTTGATGCATTGGATACCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCCGGGACTATCCCACTCACTCTGGCAGGATGTAAATCTCTCGAGATTGTAGATTTTAGTTCCAATGAGCTTTCTGGATCCTTGAATGATGCAATAACGAAATGGTCAAACCTCAGGTATTTGTCCCTTGCTCAGAATAAGTTCAGTGGAAATTTGCCTAGTTGGTTGTTCACATTTGACGCAATAGAAACAATGGATTTCTCACATAACAAGTTTTCTGGCTTCATCCCTGATATTAATTTTAAGGGTAGCTTGATATTTAACACTAGGAATGTCACTGTTAAAGAGCCATTGGTTGCAGCAAGAAACCTTCAACTGAGATTTTCAGCTGTTGTTTCTGATAGCAATCAACTCGGTTTCACTTATCATCTATCCTCAATGGTTGGAATCGATTTATCCAGCAACTTGCTCCATGGAGAGATTCCAAGGGGCTTATTTGGTCTGGCTGGCCTAGAATATCTGAATTTTTCATGCAACTTTCTCTATGGACAGCTTCCAGGTCTGCAGAAAATGCAGAGTTTGAAAGCCTTAGATTTGTCACATAATTCCTTGTCAGGGCATATTCCAGGAAACATTTCTAGCCTTCAAGATCTGTCCATTTTGAATCTGTCTTACAACTGTTTTTCTGGGTATGTTCCCCAGAAGCAAGGATATGGGAAATTTCCTGGTGCATTTGCTGGAAATCCAGATCTGTGCATGGAATCTTCCAGTGGCGTATGTGATGATGGAAGGACTCAATCTGTGCAAGGAAGTTCTTTCAGGGAAGATAGGATGGAGGGACCAATATCTCTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTCTTCTGTTCAGCAAGGGCGAGAAATTACATTCTTCAAACCAAAGTTTGA


Promoter Sequence:
>Vu_15430::LG4:7888397-7890397(-)
CAACTATGTCGAAGGAACTAAAGATTCCAACAAACCTCTGCTGCTTCATCTCACTATTCTCAATCCCCACATGAGATCTCTTTTTCCAAATGGGTATGCTCCCTTCAGGGAACTCGCCGATCGCCCTAATCGCGGACTCCACCGTCTCACTATCGTAAAACTCCACCAGCTCCGGCTTCCCCACCGTCAGATCGCCGACCACGTGGTACAGAAACACCGACGCCATCAGAATCCAAAAGGGCGTACTTATTCAGAAGAAAAATCGAATTTTTGTTAAAGTTTAAAAAGAAAAAAACAAAAACAGAGAAAGGCTGCTTCTTGTGGGCTATAAAAGGGTATGGAGAAAGATGAGAAGAAGGTCAAGAGCGTTGATGCGGGGGCGGTGGAGAATCAAGTTAGAGAAGGAGTTAGCCATTGGCATGGATGGAGAAGTGAAAGGTGAAGGCCCATTCAATTGAATCGGATCAGAAAGAAAGAGAAGTGAAAAATCGGTGAGAGAAAAAAGGAGTCGTGGATTATAGGGAAGATATGATACGGAGAATTGGATTGGGTATGTCCTTTGGGAGACAATAAGAGGAGAAAGGACAGAAGAGAGTAGATCGATGCTTAATGCGGTTGGCGACTACTGAGAATGAATGAGAGAGACACAGCACAACACAAAACACAACACGAAACACAACACAACAACTTCAATTTATCGAATGAGAAAGAGAGAGAAACACACACACAGAGAACATGATGTGTCAAGTATGACTCTTTGTGTGGCCAGCTCCATCAGTGTTCATTTTTTGACACTTTTTTTTCTTTAATTTATAAACTGTTCGTTTAACTATTATTGGGCTTTTTAAATAATATAATAATTGTGATTTATCAATACTATTATAACTAACAAAAGAATAAATAAAATCCCTGCTCTTTCCCTTCTCAACCTTACCACATTACACACTTCAGCTTTCTCCACTCCTCTACATCCTTCATCCTCCTCTTTCTATATATAATCTTTCTCCACCTTTCCGGTTAATATTTTAATTTAAATTATTGTTGACGGTTAGAAATATCCATTTATTTATTTAATTCATAAACTCGATATATGTGAAGAAGAATATTCACTTTCTTTTTAAGTTAACTTTCTTAAAAGAAATGGCTCAAATTGAATATAACTACAAAACACTGAACTAAAATCAAAGTTCAGCCTATGATATATGTATAGGTGTAGTTTTATATATAAGAAACAAATTAAAGCATTGTTTTTACTTGATGGTCAGAGAAATTGATTTTTTTTTTATAATATTATGAAGATGAGTAATTATGAGTTTGGGCACATCAAAATATTGGATTTCTATAAATAACAATAACACATTTTTAAATTTTCGAGGGATTCATAGAATTTTTCAATAAATAACTTTACATTTTATAATTTTAAAAGTACAGTTCTATAAACCTAAACTTTTAATCCCTATATATATTTTTGTCAAAATACATTGTTTTTTATTTTCACTTTTAAATCCATTAATTATTTATATAATAAATTTAATATTTAATATTTTTTTATAGTTGGATAAAAGAACCAAATTTTTACAAAAAAATTAAAATAAAAATAAATCAAAAGGACACATTTTTTCTTAAATATATTAAGTGACTATATTTATAAGGGATAGCTTAAATTTTAAAATTTCACAGAGTTTCTCAATAAAATAAGTTTTTATTTTTGTCTAATTTTAAATTTTTTTAATATTAGTAAAAAAATATTTTTTAAAACAAATTATTTGTATGCATTTAAATTTTTTCAATTTATGATTATTCATAAGAAACTTTCATTTCATATCATACAAGTATTTCCCTAATATATAAATAAAGAAGTAATCATTCAAATATATATATATATATATATATATATATACATATATATATATATATATGTATATATATATATATATATATATATGTATATATATATATATATATATATAAGAAGAAGAACAAAGGTTTTCTGGGACACA


Gene Sequence:
>Vu_15430(-)
ACACAGTAAGAAGAGAAACTTAAAAAAGGGATAAAGTGTTAGGCAACAGAGAGAAAGAGAGTAAAGTGAGAGAACTAAGAAGCACAACAAAGCCACTTTATTTTGTTCATCTAAACCTAAACCCTCTTCCTTTTACCTGTAACACTCTCACTTTATCAGCGTGACACAACACAACCAACCAACATAAGACCAATGTGTAAGACGATGTTCCTCTTTTCCTTCTCCTCTTTCTCTCTTTCTGTCCATTTCATCATGTTTTCATTCTAATCTTCAAATCCTCAACCCCCCAGTTCCCTTTTTGCTTCAAACTCTTCTTCCCCCTCCTCAAAATTGCACCTTTACTCTCATGCTGATGGTGATGGCACACACCACACCCCTGCACCGTCTATGGCACCCCTTCACTCTCCTCTCTGTGATTCTTCTCTGTGCAACCCCTTCACTCTCAATTGATGTTTTCCTACAAGATAAAGCCTCTCTTCTTCTGTTCAGGTCAAGACTGCAAGACCCTTACCAGAGTTTGTCCAACTGGGCAGGCTCTAACTGCACTTCATGGACTGGAATCACCTGTGACAACAGAACTGGGAGGGTGCTTTCCATCAACCTAACTAGTATGAGCCTTTCGGGCCAAATCCACCCCAGTTTGTGCCAGCTTCCGTACCTCAGCAAGGTGGGGTTGTCCCACAACAACTTCACTTCCCTTCTTCCTGAATGTTTTGGAAATTTGCTCAACCTAAGAGTAATTGATCTCAGCTATAACAGGTTTCACGGTGGGATACCAGACTCTTTCATGAGGCTCAGGCACCTCACTGAGCTTGTTTTGAGTGGGAACCCCGGTTTGGGTGGTCCACTGCCTGCTTGGATTGGGAACTTCTCTACAAATCTGGAAAGGCTACATCTTGGTGTGTGTTCATTCCGTGGGGGCATACCTGAGAGCCTTCTTTACTTGAAGTCCCTCAAGTATTTGGACCTTGGGAACAATCTCTTGTCTGGTAATCTGGTTGGTTTTCGGCAGCCTTTGGTTGTGCTTAATCTTGCTTCCAATCAGTTTGCTGGTACTTTGCCTTGCTTTTCAGCTTCAGTTCAGTCTCTGACTGTGTTGAATTTGTCTAATAATTCTATTGTTGGGGGACTGCCTGCTTGTATTGCTTCCTTGCAAGCTTTGACTCATTTGAACCTGTCAGGGAACCATTTGAAGTATAGAATATATCCTAGGCTTGTGTTTTCATTGAAACTTCTTGTTTTGGACTTGAGTTATAATGATTTTTCCGGTCCTATTCCCAGTCAAATTGCTGAGACTTCCGAGAAACTTCTTGGCCTTGTTCTTCTTGACCTTTCTCACAATCAATTCTCTGGTGAAATTCCTGTGAAAATTACTGAGTTGAAAACTTTGGAGGCCTTGTTTCTCTCTCACAATATTCTCTCTGGAGAAATTCCTGCCAGAATTGGAAATTTAACCTATCTTCAGGTCATTGATTTCTCACACAACGCTTTGTCTGGTACCATTCCATTCAGCATTGTTGGGTGCTTTCAGCTGTATGCTCTAATACTGAATAACAACAATCTTTCTGGGGTAATTCAACCGGAGTTTGATGCATTGGATACCTTGAGGATACTGGATATAAGCAACAACAGGTTTTCCGGGACTATCCCACTCACTCTGGCAGGATGTAAATCTCTCGAGATTGTAGATTTTAGTTCCAATGAGCTTTCTGGATCCTTGAATGATGCAATAACGAAATGGTCAAACCTCAGGTATTTGTCCCTTGCTCAGAATAAGTTCAGTGGAAATTTGCCTAGTTGGTTGTTCACATTTGACGCAATAGAAACAATGGATTTCTCACATAACAAGTTTTCTGGCTTCATCCCTGATATTAATTTTAAGGGTAGCTTGATATTTAACACTAGGAATGTCACTGTTAAAGAGCCATTGGTTGCAGCAAGAAACCTTCAACTGAGATTTTCAGCTGTTGTTTCTGATAGCAATCAACTCGGTTTCACTTATCATCTATCCTCAATGGTTGGAATCGATTTATCCAGCAACTTGCTCCATGGAGAGATTCCAAGGGGCTTATTTGGTCTGGCTGGCCTAGAATATCTGAATTTTTCATGCAACTTTCTCTATGGACAGCTTCCAGGTCTGCAGAAAATGCAGAGTTTGAAAGCCTTAGATTTGTCACATAATTCCTTGTCAGGGCATATTCCAGGAAACATTTCTAGCCTTCAAGATCTGTCCATTTTGAATCTGTCTTACAACTGTTTTTCTGGGTATGTTCCCCAGAAGCAAGGATATGGGAAATTTCCTGGTGCATTTGCTGGAAATCCAGATCTGTGCATGGAATCTTCCAGTGGCGTATGTGATGATGGAAGGACTCAATCTGTGCAAGGAAGTTCTTTCAGGGAAGATAGGATGGAGGGACCAATATCTCTGGGGATTTTCTTTATCAGTGCCTTTGTTAGTTTTGATTTTGGTGTTGTTGTTCTCTTCTGTTCAGCAAGGGCGAGAAATTACATTCTTCAAACCAAAGTTTGATTTGATTTTTGTGATAGTGACAGTTACAAATCTCCTGTAAATTCCAAATCGTAATCTGGTAGCTGGCTTCTCAGTTTCAAGTGAACATACAGTTTATTTGACTAGCAATACTATCTGGCCATCAACTTCACCGGTGTTATCTCATGAGTAATGAACAAGTGTCTCAGAATCAGAACAACAGGATCAAAATGTTATGATGAGTTGCAAAAGGTTTAAAGAACACCCGTAACTGGCGATCGGCTTTATCTAAGTGAAGACTAGTCCTGCATCATTCAGCCAGGAAAAGAATAGATGGTTGTGGTGAACATTTGATCCGAGTAGAGATCAATCCTTCATCTTTTTGTTGGCGGTTCTACTCTTTTGCTGGAACTGGTTGCAGTTAGATTAGATTGCATCACTGCATCCAATATTCATAATCAATTTGGTGAAGGGTCAGCAGCAGGAAACATACTGATTTGGTCTAGTTATGGTGAAACTTTGATCTTGTTCATCAAACTGCAGATTTGCAAGAATATTTAGTTGAAGAGAACTTGTATCATTCTAGATTAACCTAGCCCTTTTCTTGGCTTGGGGAACTTAACTTTTCCCCATAGGTGTTTTGCCTTGAGATCGCGAGTTGATAAGTATAGTGAGGAGTGGTAAGTGCAGACAAGATATATGGAGCAGATTTTCATATATTTAAGATTATTATTACAATCACAACACCATCTTATGTGATC