Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15653 LG4 10501322 10506831 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   phosphorylation of RNA polymerase II C-terminal domain, positive regulation of transcription elongation from RNA polymerase II promoter, protein phosphorylation, phosphorylation of RNA polymerase II C-terminal domain, positive regulation of transcription elongation from RNA polymerase II promoter, positive regulation of transcription elongation from RNA polymerase II promoter, phosphorylation of RNA polymerase II C-terminal domain, phosphorylation of RNA polymerase II C-terminal domain, protein phosphorylation, positive regulation of transcription elongation from RNA polymerase II promoter, protein phosphorylation, phosphorylation, phosphorylation of RNA polymerase II C-terminal domain, phosphorylation
Cellular Component   is active in   cyclin-dependent protein kinase holoenzyme complex, nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   RNA polymerase II CTD heptapeptide repeat kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein serine/threonine kinase activity, cyclin-dependent protein serine/threonine kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein serine/threonine kinase activity
SNP Position Effect Amino acid change
A/T 10501383 3_prime_UTR_variant
T/A 10501425 3_prime_UTR_variant
A/T 10501456 3_prime_UTR_variant
G/A 10501568 3_prime_UTR_variant
A/T 10502059 downstream_gene_variant
T/C 10502117 downstream_gene_variant
T/G 10502122 downstream_gene_variant
G/T 10502493 missense_variant p.Thr616Lys
G/T 10502656 missense_variant p.His562Asn
G/A 10502661 missense_variant p.Thr560Ile
T/A 10502662 missense_variant p.Thr560Ser
T/A 10502663 missense_variant p.Leu559Phe
G/C 10502990 downstream_gene_variant
C/T 10503129 synonymous_variant p.Val431Val
C/T 10503384 intron_variant
G/T 10503959 missense_variant p.Ser350Tyr
C/G 10504208 downstream_gene_variant
T/C 10505188 downstream_gene_variant
T/C 10505347 downstream_gene_variant
C/T 10505351 downstream_gene_variant
A/T 10505411 downstream_gene_variant
T/C 10505939 downstream_gene_variant
A/G 10506054 downstream_gene_variant
T/C 10506059 downstream_gene_variant
G/T 10506148 synonymous_variant p.Thr87Thr
A/C 10506151 synonymous_variant p.Leu86Leu
G/C 10506504 5_prime_UTR_premature_start_codon_gain_variant
C/A 10506555 5_prime_UTR_variant
G/A 10506828 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15653.1
MGCASSRRALAGSDFTPPGLLSLRSSSRKRCNGKRRNGVVEAREVDAGMEEEKEWKKGSLRGPVSLRLSCRFVEAEQNAAGWPSWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSNVFQAREIETGRMVALKKVRFDKLKDDSIRFMAREIAILRSLDHPNIMKLDGIITSQQSNNIYLVFEYMEHDLAGLVASPDIKFTESQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIGDFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTDYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHRIFKLCGSPPEEYWKKSKLPLATMFKPQTNYEASLQERCKGFPVTAVKLLETLLSIDPSKRGTASSALTSEYFSTKPYACDPSLMPKYPPSKEMDARNREEASRKKTLGKGREAVTSKRNRRVHKVSHDHINFNKPAWKEEMQNSSQNIGTGDDGWAHVAKVKIGALHKEQPKASCDGKSEAAQVVDGCNGNSVYSGPAPVSASSGFTWAKRRKPEASSILSDGSRSKISALDPIFVKGKCDLTKHEIEVSERKHGFNTRHQDRIFSHVLPIYQAPRFQQKSFDLADKYNSNYFMEFDFTDKLDTLFDQDHRKYGEAVKLSAAKMISSNKKDELLQRNDMRQSLRMSTSGRDQ*


CDS Sequence:
>Vu_15653.1
ATGGGTTGCGCGAGCTCGAGGCGGGCTCTTGCCGGAAGCGATTTCACGCCGCCGGGACTGCTATCGTTGCGATCGAGCTCGCGGAAAAGGTGCAATGGGAAGAGGCGAAACGGCGTCGTGGAGGCGCGTGAGGTAGACGCGGGAATGGAGGAGGAGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCGGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCCGCTGGGTGGCCATCTTGGCTTACCTCTGTTGCAGGGGAAGCTATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAATGTATTCCAAGCACGTGAAATTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACGATTTGACAAACTTAAAGATGATAGCATTAGGTTCATGGCAAGAGAAATAGCGATTCTTCGCTCACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACAATCAAACAACATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTGGCTTCTCCTGATATAAAGTTCACTGAATCACAGATTAAGTGTTACATGAGACAGTTATTAAGTGGAATCGAGCATTGTCACCTTCGAGGTATCATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACCCTTAGTCCTAATAGCAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTTTTAATGGGATCAACAGACTATGGTGTTTCGGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTGGAACAATTACACAGAATTTTCAAGCTTTGCGGGTCTCCACCTGAGGAATACTGGAAAAAGAGTAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAGCCTCTCTTCAAGAGAGGTGTAAAGGTTTTCCTGTAACTGCTGTAAAACTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTCATGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATCGGGAAGAAGCGAGCAGGAAAAAGACTTTAGGTAAAGGGAGAGAGGCTGTGACTTCAAAAAGGAATAGACGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACAAACCAGCTTGGAAAGAGGAAATGCAGAATAGTTCTCAAAATATTGGCACAGGGGATGATGGTTGGGCACATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGGCTTCATGTGATGGAAAGTCTGAGGCTGCCCAAGTGGTGGATGGTTGCAATGGAAACAGTGTATACTCTGGACCAGCACCAGTCTCAGCATCCAGTGGTTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAATCTTTGTAAAAGGCAAATGTGATTTAACAAAACATGAGATAGAAGTTTCAGAAAGGAAACATGGTTTCAACACAAGACATCAGGACAGGATTTTCAGCCATGTATTACCAATATACCAGGCTCCTCGCTTTCAACAAAAATCATTCGATTTAGCTGATAAATACAACTCAAATTATTTCATGGAATTTGATTTCACAGATAAATTGGATACTCTGTTTGATCAGGACCACAGAAAATATGGTGAGGCTGTGAAGTTATCAGCGGCAAAAATGATTTCATCAAATAAAAAGGACGAGTTGTTGCAGCGGAATGATATGCGTCAATCTCTTCGTATGTCAACATCGGGAAGAGACCAATGA


Promoter Sequence:
>Vu_15653::LG4:10506831-10508831(-)
AAAAATTGAATGAAAATAGATGGGACATAAAGTAGAAATTAATGCATATTTGGTAGGTAGGAGATGGAGATAGATGAAAAGAAGTTTGTGTTTGTAAGAAAAGAAAAAATACGGAATATATTGTATTATCTTTCACACACATATTTCTATTTTCTTATTTATATATACACACACGTATTGAATCTCTCTTTCCTCAAGCAGGTTCTTCCTTTTCCTTCCATCGAACATGTTTAACTTATTTTATAAAATTGCCACAATTTAAACTCTTTATGATTATATTCTTATGTAAAATTTTGCATTTTCTCTGAGGGATGTTTTAGCAGGATGAGATTTAGGTTGGAGTGGATAATGTGTAATAGAGAAAGCATAGCTCCAGTTACTACTTTTATTCTGTCTACTTTAGTGTCAGACTTTGCTCCTTGGTGTTACACCTCAAACAATTGTGGATATTGATTTTGTTTTTAAGAGTTAAAAAATTCTTTTCAAACCCATTTTAAATATGGAATTGTTTGATTTTCTTTTAAAGAAAAGTATATCAGTTCTACATAAAAGTGGTTTAATTTAAAGACTTGACTTTAATGATTAATTAATTAAAAAACTAAATTGGAATAAAAATGATTGAAAGGTTGAAATTATATGTTAATCGTAATAAAAGAATGTAAAAAATAATTTGATCTTGAAAAAGAAACAAATTCTTTAGTAGTTTGTTTATTTATATGTAGATATGGCCTCTACATGTTCTTGATAATCTGACAAAAAAGTGTAGAAAGGAAGGGAAGCCCCCATCTGCTGCTACCTTTATTATTTTCTAAAGATGGTCAAAACATTAAAGTTTAGACTTATTTAATTTAACCCATCTTTTTTTTTCTGCTCACTTTACCCGTGTCAAGGAATCTTAGCAACAAGAAATTATTTTAACCACTGAGTAACTTTTAGTAGTTTTTGAACAACAAATAACTTGTATCACTCTGCCAGAATAATATAAATTATATATTCTTCTTTTATCAGCAATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATAATAACTAGAAATAACAATTATTACGTGTCAACATCATAAAAGAATTTATTACAGTATTTTTTGAGTGTTTGAGCATGACATTAAATCATTTTCCGAGTACAAGATGTGAGCATTACACAACAATTATTAAGTGATGCTTAAATTATAAGTTTCTCTCATTTTTTTTTCAGATACTCTTTTGGAAGAGAACATTATTAAAAAATGGTTCAACATTAAACATAAACACTCATTTTAATGAAAATTAAACCTTGACTCCCCGTGAGGGGTTAATTATTTTATTAAACTAAGATTTATCACAATCTTTTATAACTAATACCGTGTAACTGATACATGCAAACTACTGTGAAACTTTTTGCACTGTCTCTGATAATTAAACGTGTACATATAAAAAACATGTATCCTTGCATTCTTTTAACAGAGAAACAAAATCATACAATGATGCACCAAAAAGCCCCAAAACATGTACTACATAACTTTAGTCACATAATCAAAATACAATCAAAACCAGAAACAATCATGACCCACGTAGTCATGAACAGTTTGAAAGGAAAGAACATCATAACCACGATCACTCACTGAACATGTAAATTATCCAATCAAGTCCAAGAGAGGTGTCAGGTCACAATTGGACAGCAACTCAAAACTACAAGAACTGTCGGATTGCAACTGTATACAACTGACACTTGAACAACAAAAAAAGAAGTAAATTTTATTGCTATTATAACGTGATGATAGAAAAAAAGATAAGTGTAGATATATGATTGCTGATAAAATTATTATTCCAACCAAAATCAACTAATTCCATCATGCGTTTGAATGGTGCTGTAAGGAGTTGGCATGTAGCCATCGTGCACCATGCCATTACAGCACACTCTCTTTTTCTCTTTCTCTTTGTACTTCTCTGTGT


Gene Sequence:
>Vu_15653(-)
ATCCAAACAAAGCGACAAACAAACAGAAAACAATAAGACATTATTCGAACCGTTACATTACACCTTTCTTTCTCTCTCTCTTTTCTTTCTTTCTCTTACATTTAGAACACCAAAAAGAGATATGCACCCTTGGGACCCGCGAATGTCTCACGACCGTTCGCGACATCCTCGAAAATCCTCCGCAGATCTCGCGACATACGGAGAGAAAGACGAGGGTTGGATATTGATTACTGGATTGTGTCATTTTCGGAAGAGAGAAAAAACCAAGCCCAAGGAGCGAGGTAGGAGCAACAAACCATCCGTTTTTCCTCCTCTCCCAATGCTTTTCTTTCTGGGTTTCTCTCCGTTTTCTCTCTGATCGTTTCGTTTTTCTCCGGAGGCGTTTTCGCGACCCGTTTCCTAGCCGGGTCGGAGCCCCGGAAAATGGGTTGCGCGAGCTCGAGGCGGGCTCTTGCCGGAAGCGATTTCACGCCGCCGGGACTGCTATCGTTGCGATCGAGCTCGCGGAAAAGGTGCAATGGGAAGAGGCGAAACGGCGTCGTGGAGGCGCGTGAGGTAGACGCGGGAATGGAGGAGGAGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCGGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCCGCTGGGTGGCCATCTTGGCTTACCTCTGTTGCAGGGGAAGCTATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTTGAGAGATTGGATAAGGTACTCAACTCATTTATACATTGATATTCAAGTTGAAAAATGATTGATGACATCTCAAACACTAAATTATTCGAAAGGAAATTTGACAGTAAGATACAATACAATATAAAGAAATTATAGACATTGTTGTGGATGTTTCATGCTTAGAAGTTATTAGAGGTTTGTGCATTCAATTTTATCTTGTATATTCTTTAATATTCTATTAAATATTATCGCGTATAATGAAAATCAAACAATTTTAATAGTAGTTGTTTCAAAGTGTTGTAATTTAATGCAGAAAAGGATAAAACTTACTAGCAATAGAGTTTCACCCATGGTAATATTTAATAAACATTTATCAATCATGTTGTTGCGATGAATTATTAGAAAATAGTATCAAAAGTATGCGAGGAATTAAATCTAACTTTTTCAATAAGAATTTGACTTTTAACTTGGTAGTTCACATAATTAATAGAGCATGTGTTGAAAGTTAACCAATATTATTGGGATGAAACTCCAATTTGGATTAGAACAATCTTACTTTTTTGTTCTTGAAAAAATGAATGCTTTGTGGCGATTAATTAAGTGTACATGATGGTTGGGCCAAGTTCATGGAGGCTTTAATTTTTGCAATGATGATTTTGTTTAAAGATGACAATAAGCTTCGTAATGTGATGAGTTGTATAGTTTGAGATGGAGGCAGTTTTTTGACTTTTTATAATTTGGTGGGAAATAAATGATGGGATTGGTGAACCATTTGTTTTCTTAAACTTTGAGTTTTCAATTTTGGATGTAACTTCAGTTGTGTTCAAGAATCCTCCTAATGTAGAACAAGGCTAAACAACAATTCTTCTAACCAAACATAATGATATTAAATGTTGAAGTTTTTGCATTTAACTATTAGAGAAAAAAAACAAAAAAAAAAATTCATGTTGCTAAGGTTCGATGAAAATTTGATGTTAGATTCTCACGAACTAGCAACTAGCTTGTAAAGAGCAGAGACAATTTCTTGGCCTTATTATGGCTTCTTAATGTCATTATGTTCTTAACATTTATCTATTTACAGCGTTTTCTTTTCTGTAGATTGGACAAGGTACATATAGCAATGTATTCCAAGCACGTGAAATTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACGATTTGACAAACTTAAAGATGATAGCATTAGGTTCATGGCAAGAGAAATAGCGATTCTTCGCTCACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACAATCAAACAACATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTGGCTTCTCCTGATATAAAGTTCACTGAATCACAGGTTTGTCTGCATTTTATTACACAATTTTGTGACTCACTAGGTTGGTTACTTTAGCTTAGTGCATTAGATGTTACCATAACTGTTGTTTCATATTTTACTCAACAGATTAAGTGTTACATGAGACAGTTATTAAGTGGAATCGAGCATTGTCACCTTCGAGGTATCATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACCCTTAGTCCTAATAGCAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTTTTAATGGGATCAACAGACTATGGTGTTTCGGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTAATCCTCATTTTCAACAACACACTATAACATTGTTCCAACGAGAATTTACCTTATCACCACATCACATTAATGCATAGGATCCTGAAATTGCCATGTTGTTTTTCCTTCAGGGAGATAAAATTCAAGGCTTTATTCATCCTTACAAGGATAATTAATGCATCATTTCATTTGTGAGGTTAACACTAAGTCTTTGTAGGCTTAATTTGTTGTGTGTTCTTATTTAATCTACAGGTGGAACAATTACACAGAATTTTCAAGCTTTGCGGGTCTCCACCTGAGGAATACTGGAAAAAGAGTAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAGCCTCTCTTCAAGAGAGGTGTAAAGGTTTTCCTGTAACTGCTGTAAAACTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCTGAGGTGAATCTTTATTCATTTTGTTCTTCTTCCTTTTTCAATAAGATTTATCTTTACCATAAAGAATGAATCTTCACTAGTTAACTATGAGGATGGTGTTCCATGAGTATTTTTCATAGTTGTTATTCTGAAACTGCTGTTTTATTAGGACGCATACTGGCTTTTGGCTATTGCACGTAAGTACGTTTTTGATTCTATGTTTCATGTTGGACATTTTGTAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTCATGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATCGGGAAGAAGCGAGCAGGTATATATAATTTCTCAGTTTTCTTCTATACATTATGGCAAAGCTATATTACACTTGGCTTTTTCTCCTGCTTTGACTCTTATTTATAAATTTAGTTATTATTAGTACTACTATAGGGAATGTAAATTAAAGGTTGCTTCATCTTCGAAAAGGCCAAGGCCTAAATTTTGGTCACATTCGCGTATATCAAAACCTTATACTGGAGAATTAGCATTCATTATTCATTTAAATCATTCACCAGGTCCAAACTTGAGTATCTTAACCACCGAATTATTTAAAATGGATACTCTTCCTAATCATGGTTTCTATTGAAACAACATGCTTAATTTATTTCCAATTTGTGTGACTGAATTCTGTCTTGTACACAGGAAAAAGACTTTAGGTAAAGGGAGAGAGGCTGTGACTTCAAAAAGGAATAGACGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACAAACCAGCTTGGAAAGAGGTGCTCTTGCTTTCAGTAACAGTGCCACGCTTCTTGAAGAAAATAACTATTTTTTATTCACTTCTCTTTCTTGTCTGTGAAGGAAATGCAGAATAGTTCTCAAAATATTGGCACAGGGGATGATGGTTGGGCACATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGGCTTCATGTGATGGAAAGTCTGAGGCTGCCCAAGTGGTGGATGGTTGCAATGGAAACAGTGTATACTCTGGACCAGCACCAGTCTCAGCATCCAGTGGTTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAATCTTTGTAAAAGGCAAATGTGATTTAACAAAACATGAGATAGAAGTTTCAGAAAGGAAACATGGTTTCAACACAAGACATCAGGACAGGATTTTCAGCCATGTATTACCAATATACCAGGCTCCTCGCTTTCAACAAAAATCATTCGATTTAGCTGATAAATACAACTCAAATTATTTCATGGAATTTGATTTCACAGATAAATTGGATACTCTGTTTGATCAGGTAAGTTTGAAATCCTCAGTCGAATTATGATCAAACAAAACCATAGGTTATCATTGTTGATCATGGACAATGTATATGCCACTTTTTATAACATTAACTGATCTGTCAGGTTTGGTAACTAATACTTCATATGTGTTTTTTCATTAATAGGTGGACATAATCATTTCTAATGGATTTACTTTTTTTTTTACTAATTAGTGGTTCAAAAACTTCCCTTGCTATAGTATAACTTAATTCTCCAAATATCAGTAACATCACAATGATTTCCAAATGATAATTTTAGTCCTTAAACTATTAATTTGGTCCTAGCGAATAGTAGCTTTGAACTATTTTGATGTCTACAAATTAACACCAGAGAAGCAATTTGGTCTAATAATCTTTGGTAAACTAAATTATTGTTCTTTTTTTAATTTACTTACTGTTCATAGAAATTCTTGTTTAGTAGTGTTGTTTTCACCGAGTGTTGGTTATATATGAAATCTTGATATGAATCAAAATACGTATGTACTGCTCTATTTTAATCAGGTTGCATCTTATTTTATGTGCCAAATATTTACAGGACCACAGAAAATATGGTGAGGCTGTGAAGTTATCAGCGGCAAAAATGATTTCATCAAATAAAAAGGACGAGTTGTTGCAGCGGAATGATATGCGTCAATCTCTTCGTATGTCAACATCGGGAAGAGGTAAAGAGACTACTTTTATCTAGGGTGATGTTACACAAGAAACAAACATATTTCACCTCCATGCATGCTCAACATAATGTTGCAGTAGACATTTTTCTTTGGTCTGTAACTGCAGTTTTAAGGGTAAATCAGAAGTTGTTTAAAACAAAATTTCAATATAGCTCGTTATGAATACCAGCATATGAATTTGTGTATTACAGACCAATGACACAAGGATCGATGGAGAGGATTAATCCCACATCTTCAAGGGCTGCATGGCTAAGAAAACATTGTGGCCATTGATGATATCCTTAATGGATATCTGAACCATTATAACTTGTACTTCAGCTCTCTTGATTTGTTCTTTACAGAGTAAAGTGTACATATAGGACTAACTCTGAATTATACATAGGATTTCAGTAACAAATTGCAGCTCCCAAGTGTTGGGTGATATGCTTAATGAAAAGTTAACTTTTCT