Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15712 LG4 11071892 11073967 PREDICTED: transcription factor TCP17-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of defense response, leaf senescence, leaf senescence, positive regulation of development, heterochronic, leaf development, cell differentiation, regulation of transcription, DNA-templated, regulation of secondary shoot formation, regulation of secondary shoot formation, leaf development, leaf morphogenesis, leaf development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, leaf morphogenesis, leaf development, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, chloroplast, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
T/A 11072012 intron_variant
C/T 11072036 intron_variant
T/A 11072040 intron_variant
C/T 11072056 intron_variant
A/C 11072062 intron_variant
A/G 11072834 synonymous_variant p.Ser105Ser
A/G 11072837 synonymous_variant p.Val106Val
A/G 11073076 missense_variant p.Asn186Ser
T/C 11073209 synonymous_variant p.Asn230Asn
T/C 11073282 synonymous_variant p.Leu255Leu
T/A 11073458 synonymous_variant p.Pro313Pro
C/T 11073562 missense_variant p.Pro348Leu
C/T 11073635 synonymous_variant p.Ser372Ser
G/C 11073744 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15712.1
MVPWNRILTSIKWKDKTLHLATNNEIHKIMIKSPKEVDFALKQEGGHSQSISDPEKEKASSSSAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFTLGYPSAATSNEAANSHSHSQPNEQLLNINSNIHWQGSDQNSSWKLKRKEVSGEMISTDKASWINRSEEDKQGSNNEGPSTHVMPNNLLPRVNHPSFLGLLNTMPHGYHWEASAGDVSHPQLENNGFSNQTDIHGINVVPFPPSTLSLSTRNSQILLCPPGAAQPYFPSHFTAMDMDQRQINHYQMLSSGSQNPLANSLNHSFSLAMMSHKPLHSPNSSKSPSHKDQDFPSK*


CDS Sequence:
>Vu_15712.1
ATGGTACCATGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACCAACAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTGCTTTAAAACAGGAGGGTGGTCATTCTCAATCAATCAGTGATCCTGAAAAGGAAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGGAAAGACAGGCATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGACGGGTACGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTGAATGCTGCTAAGCATGAAATTGATGAACTTCCACCACTGCCAATTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGCTACTTCTAATGAAGCTGCAAACTCTCACTCTCACTCTCAGCCTAATGAACAACTTCTTAATATAAATAGCAACATTCACTGGCAAGGTTCAGACCAAAATTCTTCATGGAAATTAAAGCGTAAAGAAGTTTCAGGAGAAATGATCAGCACTGACAAGGCAAGTTGGATAAATAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATGAAGGTCCTAGCACACATGTTATGCCAAATAATCTCTTGCCAAGGGTAAACCATCCTTCATTCTTGGGTCTGTTAAATACTATGCCACATGGTTACCACTGGGAAGCTTCCGCTGGTGATGTTTCTCATCCTCAGTTGGAAAACAATGGATTTTCAAACCAAACAGACATACACGGCATTAACGTCGTACCTTTCCCACCATCAACATTGTCTTTATCAACAAGGAATTCTCAAATTCTGCTATGTCCTCCAGGAGCGGCCCAGCCGTATTTCCCTTCACATTTTACAGCAATGGACATGGATCAGAGGCAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAACCCATTGGCGAATTCTCTCAATCATTCTTTTAGCTTGGCTATGATGTCTCATAAACCCCTCCATTCACCCAACAGCAGCAAAAGCCCATCCCACAAAGACCAAGATTTCCCTTCCAAGTGA


Promoter Sequence:
>Vu_15712::LG4:11069892-11071892(+)
GAGTCGTTTGCCTTTGTTCTTTTTGTAGAATTAAAAGAAGGCCCACTTCTTTTTCTATGGAAATTAAAGAACATTGTATCTTTAGGAATATAGTCTGCCTTTTTCTATTTTGTTCATGCTTTTACATGTCAAAGTTATGCAAATTAGAAGATATATTGTTTAGGGCATTTAAGAACTTTTCCATAACCTTATTTATCAACTATTTGCTTAACATGTATATTAATTAAAGAAAAATCAGGTTGGTTGCTGTAGCTTTCAGATTTCCTCCTTGTTAGGATGAATTTATCCACGTTAAACCATGAGAGAGAAAATTGTGATGAACGATACTGTATCTGAGATGGGTTTTGTGAGGGAGTTTTAGGGTTTTGAGTTGAAGGTGAATTGAATTTGAAAAGTAAAAGAATATATTTGCAGTCTTTGCCAAATGAAGAAGAGAAGAAACTTGGGTTACGTTTGTGCATCAGACATATGATTAATTGACTTTGTTTTGATGAAAGCATGCGCCATAGGGTTAATAACTGTGTCAGTGTCAGCTCAATGAAAAGCCTCAACTTGCCTCCCATGCATATCTCTCTGCAAAAGTTGTGTGGTCCTGTTTGCGCTCAGTGGGTGTACGTTTCAAAAGATATCACAACATAATTGGTCCCTCACCTACCAGTACCTTTCCCTTCTCCGAAGTAGCTATCATACACATAGACATGACAATGCCCTTGGACAAGGCACCACAACTTTTAAGTCTCGCCATTACTTATCCCAAGTGGATTTCTCTGTTTGTCTTCTAAATCCCCTCCATGTGATGCCCTTACTGTTTCTCTTTTATCTCAATTTCTCCTTTTTTTACCTTTTCTTTTCATCTCTGACCCAGCAACTATGAACATCCCATGCTCCAAAATATAGTAACTGTAAAAGAAAACAGATAATTCTGCCCAAGAAAACCGATCCAGTAGTGAAAACATTACGGATGACATATCAATCAATGATTTTTTATACAAAAATCATTCTGACCTTTTTGTTTTTTTGGTCAATCCAAAATTTCTGTCGATCTATTCTCCTGATAACTGTTATCTGGAAAATACAATGATTATTTTAAGAAATTATCTTCAATTTGTTTCATTCATGTATATAACTGTAAACTCTTAGTAAAACAAAACTTGGGATTATTATTGCAATTGGGCTGTCCAAAATTTGATTGATCAATGATTTTGAGGCTGTCATGTCCTTCTGAAACTTTTCATCTTAGATTCTAAGAATACGTTAGTAGAAAACTTCTTTTGCATTAATATGTTAAGAGATGTAGATATTAGTTAACAAGACTTTTGCCCTTAATAAGAGCAACATTTTTGTTGATGCTTTGCTACATCTGTGGATCCCCATGTGATGTGTTCAGTCACAAACCTTTTGTAGTTGTCGATAAAGTGTAATCAGGCGTTTTAGAAGTGTGTAGGAATGGTCCCCTTCTGTGATTATTAACTGTGTTGGTTAGGTTAAGCCCTAATGCAAGCAATTTTGTTGTTGTTGTTAAATTATGACCTAACAAATATAGAGAAAAATCTTTTTGTACAGAAGTCGAGCCTCTTTCCTTTAATAACAAACTAAGAAAACTTACCCTGAACACTTTTACCTTCCAAAAACATTAAAGTAATTTGTTACAATTTTTATCAGTAAATGTTACAAATGTTGTTTAATTTCCCTCCGTTAAGTACTCAAGGTTTTGTGAGAACAAAATACCAGAATATAACAAAGGAAATGATTGCCCATTATGCCTGACCAAAAAATGATAAGACAAAGACTACCATACTTATTTGACCAGCTGGGATGTTTGCCACGTGTCAAACCATGTGCCATTGCTTTATCTTTCAGTGTGGCGTGGTAGTTGAATTCCGGCATCTTCCTTTTCCAAGCAGCAGACTCCAACTTCCACACTATTATGTGCAATTAAAGACAAGTCAAGCTCAATCGGAAATATATAAAATTTTGTTCAAGCTTGTTATTCAAAAGCA


Gene Sequence:
>Vu_15712(+)
ACAGTGCAAACTTCATCCTTCTACCTTCTGGTGCATGCTTGGTATGAGAACAGGCACGTGTTCATGTGAGTTTGCAGATACGATCAACGATAACTAGGGTTTGTATAAATATTAAATATATAAATAGTTGCATTATTTTTCCTGCAATTTTAATTACACCCTTCCTGACTATGATGCAGCCTTTTGCTGCAGTTTTCTTTATGTACATATGATAGATGCCTCTGCTTGTAATTTCTAAATGATTTTAGAGTTTTTAATATACAACTGCATTTGATATGATTCTTTTTGGTATTTTATATAAATGTTCTTTAATCCCCTCAAAATCACATCTATAGAAAGAGAACTATATGCAAACATCCGTTAGTTTTCTGCAAGTCAGCGATCTGTGTCACCATGTCATCTGTTCTTCGTGCATCTACTTCCATTTCCAAAGGGAAAGAATATGGATTTTAAACAATATTTATATTTGATTTATTTACAGCCTTTAAATCTGAGTAAATTTTGTGGATTATCATCTTCTTCGTATTTCCTATTATTTTATTTCGTTTGTTTCCATGCAGATTCCTAGGATCGAGAGACAATCCGTAAATCCGCACAAGGGACTTAAAATTTAGCAGTTTCATTGTTGATGGTACCATGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACCAACAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTGCTTTAAAACAGGAGGGTGGTCATTCTCAATCAATCAGTGATCCTGAAAAGGAAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGGAAAGACAGGCATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGACGGGTACGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTGAATGCTGCTAAGCATGAAATTGATGAACTTCCACCACTGCCAATTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGCTACTTCTAATGAAGCTGCAAACTCTCACTCTCACTCTCAGCCTAATGAACAACTTCTTAATATAAATAGCAACATTCACTGGCAAGGTTCAGACCAAAATTCTTCATGGAAATTAAAGCGTAAAGAAGTTTCAGGAGAAATGATCAGCACTGACAAGGCAAGTTGGATAAATAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATGAAGGTCCTAGCACACATGTTATGCCAAATAATCTCTTGCCAAGGGTAAACCATCCTTCATTCTTGGGTCTGTTAAATACTATGCCACATGGTTACCACTGGGAAGCTTCCGCTGGTGATGTTTCTCATCCTCAGTTGGAAAACAATGGATTTTCAAACCAAACAGACATACACGGCATTAACGTCGTACCTTTCCCACCATCAACATTGTCTTTATCAACAAGGAATTCTCAAATTCTGCTATGTCCTCCAGGAGCGGCCCAGCCGTATTTCCCTTCACATTTTACAGCAATGGACATGGATCAGAGGCAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAACCCATTGGCGAATTCTCTCAATCATTCTTTTAGCTTGGCTATGATGTCTCATAAACCCCTCCATTCACCCAACAGCAGCAAAAGCCCATCCCACAAAGACCAAGATTTCCCTTCCAAGTGATACACAAAAATACAAAGTTTATCTGCTTCTTCTCTCACAATATGCATGGATCATGAAGACTGTGAGAAAGCTTCTTCAATTACAACATAGTCCACGTTACGGCGGGTTTGAATAATCGTTTCGTTCTTGAATGCGTGTTTGGATTTCCTTCTATTTCTTTCAGTTATAGGTAATCCTTAAATTTTATCCTTTTGTTTTTTGAGCTTATATATTGCATGAAATGGTCTTACATATGAATTTCTTTCTATGGGTATAATATAATATATAAGAGCTCTCCTTTATGCGAT