Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15915 LG4 12963013 12964323 PREDICTED: dof zinc finger protein DOF2.4-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plasmodesmata-mediated intercellular transport, root radial pattern formation, regulation of transcription, DNA-templated, plasmodesmata-mediated intercellular transport, root radial pattern formation, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/T 12963161 missense_variant p.Pro299His
A/G 12963268 synonymous_variant p.Gly263Gly
A/G 12963311 missense_variant p.Leu249Ser
T/C 12963398 missense_variant p.Asn220Ser
T/C 12963522 missense_variant p.Ser179Gly
T/C 12963544 synonymous_variant p.Leu171Leu
T/C 12963565 synonymous_variant p.Thr164Thr
T/G 12963849 synonymous_variant p.Arg70Arg
G/A 12963983 missense_variant p.Ser25Leu
C/A 12963997 missense_variant p.Leu20Phe
A/G 12964060 splice_region_variant&intron_variant
T/G 12964212 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15915.1
MQPNQPAGIATQNPHIPPPLQPPPSSVTAAIGGGGCGGGGYQGSIRPGSMADRARMAKIHQPDAALKCPRCESANTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGSGGRSKSPMKPSTGSTSASANSSSSGCTTDHVMMTHLPTPTQTQFPFLTSLHHYNSDYVSGGIGSHFGTITTTPLVGRNSSDVEFQIGTGSASSLGNSGGAMLSNGLGEQWRLNNLQQVQQQFAFLSTNLEPQIGLFQFGGGENNNAEPPSYAKEGGRFNIRSKIDSISSLSGLMPQVNTIKMEENQGLNLPKNLLMGNDALWNGSGNAWSEVPCFTPSNNHML*


CDS Sequence:
>Vu_15915.1
ATGCAGCCTAATCAGCCAGCAGGAATTGCCACCCAGAATCCGCATATTCCGCCACCTTTGCAGCCGCCACCTTCATCGGTGACGGCTGCTATTGGAGGTGGTGGTTGCGGTGGTGGCGGCTACCAGGGCTCAATTAGGCCGGGATCAATGGCTGATAGAGCTAGAATGGCAAAGATACACCAACCTGATGCAGCACTGAAATGTCCGAGGTGTGAATCTGCTAACACCAAGTTTTGCTACTACAACAACTATAGCCTTTCACAGCCCCGCCACTTTTGCAAGACTTGCCGTCGCTACTGGACCAGAGGAGGTGCACTCAGAAACGTGCCGGTTGGAGGTGGTTGCAGAAGGAACAAGAGAAACAAAGGAAGCGGCGGTAGATCGAAGTCTCCCATGAAACCCTCGACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTGCCAACTCCAACACAAACTCAATTTCCATTCTTAACCTCCTTGCATCATTACAACAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGACGATCACAACAACACCTTTGGTGGGTAGAAATAGCAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCGCTTGGTAACAGTGGTGGAGCTATGTTGTCAAATGGCCTCGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAGCAGCAGTTCGCTTTTTTGAGCACTAATCTAGAGCCGCAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAATAACAATGCTGAACCGCCAAGTTATGCAAAGGAAGGTGGCCGGTTTAACATTCGGTCTAAAATAGATTCTATTTCTAGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAAGAAAATCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGAAATGATGCACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACATGTTGTGA


Promoter Sequence:
>Vu_15915::LG4:12964323-12966323(-)
AACTATTATTTTAAATATTAAAAATTATAATTGTAGTTTGGTTATTTTTAAATTTATTAAAAAAATCTATACAGTACCCGTACACTTGACCATATAGATTTATATATTGATATAATATTTAAGAAACGACTCGCAAATTGTTCTACATGGGATTAATCTTAGATTAAACTTGCTAAATTCATTCTCATTACTTTAAATTAAATATTTCAATTGCACAACAACCTGAATTGATATGAATAAAATTCCAATCATGTCTAAATTTTATTTGTGATTGAAGAATGATTTTCAGTTTAATTACCTTCCAAGTTTAATGAGTATATTGACAAAGCATGTAATCATGAGTTTAATTTAAGGATGGTGTCAAAAGCAAAAATAGCTTTCAATGTAATCATGAGTTTCCAAAAAAAAATAAAAATTTAGATGAAAGTATTTGATATTATAATTATTTCCCGATGATTTGATTTCTCATAATTAATCTAATTAAATTGCGTTAATCAAGTAATCTTTTTCTAAGGAAAAATGACGAGACATAAAACAATACAATTTACTGATATGAAAGACAACAAAAAGTTATTAACTCGTATGAGCTAACGGTGTTAAATTTCAAGAGAGAAAAATACTTAAAAACCTTAATTTTTTTGTTATAACTTTTTCACATGTATATCATCAGAGAAAAATCACGTTGAAAATAAAGTATATACTCAATATTTTTATGACAACTCGAACCTTTATCAATCATATATATATATATCCTCTCTTTCTTCTAGACCCAACTAGTTGAAATCATCTCACCTAACTACATTAAAAGTGTAAAGTGCAAAAGTTTAATGCATATTTTTATTTTCTTCATATATATGTGTGTATGAGTTTTTTTTTTCTTTTTCCTCCCATGTAATATATAATAAATGGAAAATGTTATTTGGACAACAAAAGTTTGACACAATTTTAACAACGGTGACGTGGCAGCTGTGCATTGGCTCAGTGAATTGAAAACAAACCAGAAAAAACCCAAAATACCCCTCACCCCGGTTCACTGAGCCAATGCACAGCTGCCACGTCGCCGTTGTCAAAATTGTGTCAAACTTTTGTTGTCCAAATAACATTTTCCATAATAAATAAACTTCCAATTTCCAAGACTTTCACTTGATATCCAACAATCTAGAAACAAAGTTTCATTGCTTAAAAAAACAAACTTTCACTTGGAATGCTAGTTTTGAGTACATTCTACATCTTCATCAAATGTTTGAATCTGATAAAAAGTGATCTAATGGCATGAGTGAAATGGTAAATAAGTGTATGAAAATATGAAAAAAGGTGTGTATTTTTGTATGATAGACATGTATTAATGAATAATTTGACAGAAAAAAAAAGGAAAAAGCTGTTGCCGAAGAAAAGCTTAACGAGATAAAGAATGAAAAAAATAATGAACACTTTTTTCTGAACAAGAGCTGGCGGAAGGGAAACAAAGGTACATTCGATTGTGACGCATCCACCGATGACCTCCCCACCATGAGTCCATGACTCAACACCTTTTTGCTTTTCAATTCCAACTTATCATATTCTAATAAATTGTTTTTCAACTTCTTTATATATAATATGTTAATCTAAACCTAGGGCTAGGGTTTCTCTTTCTTTTAACTCTTACAACATGCATGGCCATTGGAGAGTAAAATCTTTAACGCTAATGCCACAGTAAAAGCAGAAGAGAAAAAAGTGTTATGGAATAAGAAACTGCTTCGGTGCTCCTCCATAATCCTCCAATAATTTTAATAGGAACAAAAAGAAAGAGAAAGCAAAAATTAAGAAGAAAAGTAATATATATATATATATATAGAAACACCCCCACACAGCACAAGCTCCTTTATCTTTTTCCCGTCCCCTGTGATATCTTTCTCTGCAACTCTCTCATGTTGATGTGATTCTCCACCCACACAGCACCAAAGAAAGAACCCATCAAACTTTTACAAAAGAGAAAGAAAGCTCTCTAATTAACAAGAGCT


Gene Sequence:
>Vu_15915(-)
ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGGCAAGGATTAATTCTTTCATTCTCTTCAATTTCTTTTCCTTTTTCTTTAGCTTCTTCATCAATAAAGCAATTAATCACAACATCAAATATTCCTACTCATACAACTTTATCAATCTTTTTTTTTTTATATTTTTTCCTGAATATACTCTTTGTATATGTGTACACTCAATTATGTAGTTTTTTCTTTTTTCGCTCACTTGTGAAAAAAATTCGCAGCAGCCTAATCAGCCAGCAGGAATTGCCACCCAGAATCCGCATATTCCGCCACCTTTGCAGCCGCCACCTTCATCGGTGACGGCTGCTATTGGAGGTGGTGGTTGCGGTGGTGGCGGCTACCAGGGCTCAATTAGGCCGGGATCAATGGCTGATAGAGCTAGAATGGCAAAGATACACCAACCTGATGCAGCACTGAAATGTCCGAGGTGTGAATCTGCTAACACCAAGTTTTGCTACTACAACAACTATAGCCTTTCACAGCCCCGCCACTTTTGCAAGACTTGCCGTCGCTACTGGACCAGAGGAGGTGCACTCAGAAACGTGCCGGTTGGAGGTGGTTGCAGAAGGAACAAGAGAAACAAAGGAAGCGGCGGTAGATCGAAGTCTCCCATGAAACCCTCGACAGGTTCTACCTCTGCAAGTGCTAATTCTTCTTCCAGTGGCTGCACCACTGATCATGTGATGATGACTCACTTGCCAACTCCAACACAAACTCAATTTCCATTCTTAACCTCCTTGCATCATTACAACAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGACGATCACAACAACACCTTTGGTGGGTAGAAATAGCAGCGATGTTGAGTTTCAAATCGGTACTGGTTCAGCTTCATCGCTTGGTAACAGTGGTGGAGCTATGTTGTCAAATGGCCTCGGTGAGCAATGGAGGTTGAACAATCTGCAACAAGTTCAGCAGCAGTTCGCTTTTTTGAGCACTAATCTAGAGCCGCAGATTGGGTTGTTTCAGTTTGGTGGTGGAGAAAATAACAATGCTGAACCGCCAAGTTATGCAAAGGAAGGTGGCCGGTTTAACATTCGGTCTAAAATAGATTCTATTTCTAGTCTGAGTGGGTTGATGCCTCAGGTTAACACGATAAAGATGGAAGAAAATCAAGGTTTGAATTTGCCAAAAAATCTCTTGATGGGAAATGATGCACTTTGGAATGGAAGTGGCAATGCATGGAGTGAAGTTCCTTGTTTCACTCCTTCAAATAACCACATGTTGTGA