Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_15969 LG4 13365369 13368612 PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of seed germination, regulation of transcription, DNA-templated, long-day photoperiodism, flowering, abscisic acid-activated signaling pathway, abscisic acid-activated signaling pathway, long-day photoperiodism, flowering, abscisic acid-activated signaling pathway, gibberellic acid mediated signaling pathway, abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, long-day photoperiodism, flowering, gibberellic acid mediated signaling pathway, regulation of transcription, DNA-templated, positive regulation of photomorphogenesis, long-day photoperiodism, flowering, gibberellic acid mediated signaling pathway, long-day photoperiodism, flowering, positive regulation of photomorphogenesis, gibberellic acid mediated signaling pathway, regulation of transcription, DNA-templated, positive regulation of photomorphogenesis, regulation of seed germination
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, transcription coregulator activity, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein heterodimerization activity, protein binding, DNA-binding transcription activator activity, RNA polymerase II-specific
SNP Position Effect Amino acid change
C/T 13365472 intron_variant
T/A 13365647 intron_variant
T/C 13365757 missense_variant p.Asn360Asp
A/T 13365762 missense_variant p.Val358Glu
A/G 13365817 missense_variant p.Ser340Pro
A/G 13365864 splice_region_variant&intron_variant
T/C 13365896 intron_variant
C/T 13365918 intron_variant
T/C 13365925 intron_variant
A/G 13365964 intron_variant
C/T 13365980 intron_variant
A/G 13366013 intron_variant
T/C 13366015 intron_variant
T/G 13366029 intron_variant
C/T 13366055 intron_variant
T/C 13366069 intron_variant
T/C 13366083 intron_variant
C/T 13366084 intron_variant
G/A 13366088 intron_variant
C/T 13366089 intron_variant
T/C 13366104 intron_variant
G/A 13366132 intron_variant
T/A 13366137 intron_variant
A/G 13366147 intron_variant
G/A 13366153 intron_variant
C/T 13366169 intron_variant
G/A 13366173 intron_variant
C/A 13366177 intron_variant
A/T 13366178 intron_variant
A/G 13366188 intron_variant
A/G 13366204 intron_variant
C/T 13366206 intron_variant
A/T 13366216 intron_variant
G/A 13366218 intron_variant
G/A 13366244 intron_variant
A/G 13366268 intron_variant
G/A 13366276 intron_variant
A/G 13366279 intron_variant
C/A 13366300 intron_variant
T/A 13366304 intron_variant
C/A 13366305 intron_variant
G/A 13366339 intron_variant
T/A 13366343 intron_variant
G/T 13366373 intron_variant
C/T 13366386 intron_variant
C/A 13366422 intron_variant
A/G 13366457 synonymous_variant p.Asn318Asn
A/G 13366724 intron_variant
T/A 13367019 intron_variant
A/T 13367074 splice_region_variant&intron_variant
T/C 13367223 intron_variant
T/C 13367349 missense_variant p.Ile210Val
T/C 13367430 missense_variant p.Ser183Gly
G/T 13367584 missense_variant p.Asn167Lys
T/A 13367647 synonymous_variant p.Ser146Ser
T/A 13367664 missense_variant p.Ser141Cys
T/C 13367883 intron_variant
G/A 13367954 missense_variant p.His127Tyr
A/*,G 13368113 intron_variant
C/T 13368180 synonymous_variant p.Pro79Pro
G/A 13368183 synonymous_variant p.His78His
G/C 13368197 missense_variant p.Gln74Glu
A/G 13368204 synonymous_variant p.Asn71Asn
T/C 13368206 missense_variant p.Asn71Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_15969.1
MLPNSVLRPSCTMSRYLQEDREVSNFNLPLDCNNNSVPSNSMSMTPYTMPQFRQDRERSSSNLLPSSLLPNSIQNPFHPMFEYCQQDREANNFILPTDFNNNLASSNMVSNFMSNPFYSMPQYNEEHRQGSNCNQAMDFHSNSVSSNVVSNSMLVPSCPILHYHQENDRERRNTFNLPLEFNSNSASTNVLSNSISMPSYPVPQYRPQNIQEGKLRSFWEKQLMDIQAAEAFKSQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQFLTDIVPDNLQNFCAYGAQQEERTAGNIAEGRHSSQATLPDTAGFMGNPMNVMNMGRGLEAGNQLIPQPNNMMQPPFVMPSDQFPYNFHPK*


CDS Sequence:
>Vu_15969.1
ATGTTACCCAATTCTGTGTTGAGACCTTCTTGTACAATGTCTCGGTATCTTCAAGAAGATAGAGAGGTAAGCAATTTCAATCTACCATTGGATTGCAATAACAATTCAGTTCCATCAAATTCCATGTCCATGACTCCTTATACGATGCCTCAATTTCGTCAAGACAGAGAGAGAAGCAGCAGCAATTTACTTCCATCAAGTTTGCTACCAAATTCCATACAGAATCCCTTTCACCCGATGTTTGAGTACTGTCAACAAGATAGAGAGGCAAACAATTTTATTCTACCAACGGATTTCAATAATAATCTAGCTTCATCCAATATGGTATCAAATTTCATGTCAAATCCCTTTTATTCAATGCCTCAGTATAATGAAGAACATAGACAGGGGAGTAATTGCAATCAAGCAATGGATTTCCATAGTAATTCAGTTTCATCAAATGTTGTCTCAAATTCTATGTTAGTGCCCTCTTGTCCTATACTTCATTATCATCAAGAAAACGATAGAGAGCGGAGAAACACTTTCAATCTACCATTGGAATTCAACAGTAATTCAGCTTCAACAAATGTGTTGTCGAATTCCATCTCAATGCCCTCGTATCCAGTGCCTCAGTATCGTCCACAAAACATACAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGATGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTATCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAAAGTACTGTGCAGCCATGTGACGTTGCTAAGGTTATTATGCAGAATCATGCCATGCAATTCCTCACTGATATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGCAGGAAGAGCGTACTGCTGGAAACATTGCAGAAGGAAGGCATTCAAGCCAAGCTACCCTGCCTGACACAGCTGGTTTTATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGGCTTGGAGGCAGGAAACCAGCTGATTCCTCAACCCAACAACATGATGCAGCCTCCCTTTGTTATGCCTTCAGATCAATTTCCTTACAATTTTCATCCCAAGTGA


Promoter Sequence:
>Vu_15969::LG4:13368612-13370612(-)
CGAAACAACTTCCCCACAGTGAAGCCACCTTCACCGCAAACCACCATGGAACCTGCGAAGTAGAAACCCAAGTCTGAGAATTGTAAAGTCTGCAAACTGCGAGCAAACCTACCATTGTGCCTAATGAACTAGCAATCCAGAAAACCACATCGCAAGACCTCCATGAACCCAAATCGCAATCACTATCTTCCTTCGTCCTAATCAGAAACCTACAGAAACCTAGAAATCCCAATCACCTTTGAAACGTAAGAGTTATATTGAAGACCTTCTCAACCGAATCTGTATATATAAAAGTAAAAGTCGGTTCTATTACAATCAACATAACAATGCAATAGAAGTGGAATATATGAAAGACCGAACGGTGTTGGGAAAGACCGAATGGTTATGGTGACGGGATGAAGTGCAATATATGAAATATCAAACAGTGTTGAGAAAGACCGAACGATTATGGTGACGGGATGAAGTGGAATATATGAAAGACCGAACGGTGTTGGGAAATACCGAACGGTTATGGTGATGTAATGGAGTGCAATATATGAAAGACCGAACGATGTTGGGAAAGACCGAACGATTATGGTGACGGGATGACGTGCAATATATAAAAGACCGAACGATGTTGGGAAAAGACTGAACGGTTATGGTGACTGGATGACGATGGTGGCCGAACGGTGATGGTTGCACAGGGCTAGAAGAAACAGGATTCAATCAGGCATGTGTCACTCCTCAAACGAAATCCTCCAAATACTCACTTCTCTTCCGCTAATATGAAAGAAACCCAAAAAAAACCCCAATCATTATTCTCATCCTCTACCACGAGACCAATTTGCGAACCTTAACTCGCGCTGCCATGGTCATCCCTAAACCAGAACCAGTTCGAAACCCTTAACCCATTGCGACTTTCTCCTCCATCAACCCTCACGCCTAACAACCACCACCATCCACTGCATTCATATGCGTCACCAACATGCACGAAAACCAAAAACAATCACAAACTCCTTGCACCTCTACCAACCAGAAATCGCGAGTGTGAGATCGCCATTCTTCTCGTGCACCTCAGTTTCGCAGTGCCGCTGTGAAAAGCCACTTGTAATTTAAAACCAGGAAACCCAACTAAAATATAAACATTTGATCAATGCAAAAAATGTCAACCTGTATTAAAACTAGTAGAAGATCCATATCTCAGTAACAGTGGAGGGTGTGAAAGAGATGAGTAGACTTTTTGAGTGATTGGAGAAGAAGAAGGAAGGGTTTGGGAAAAACGTGACAAATATTTTAGAAAAAAAAAACGTGGCATAGACGTGGTTCACCGTTAGTCACCTCATACAAAAATTTAACGTCGTTCGATTTTAAGGACTAAACATAAGAGTTTCAAAACTAAGAGGACTAAAATAAACAAAACTTTTTCATAGAGACTAAACCCAAAATCACGTGATAATTAAGAAATTAAAAACATATTTAACCTTAATAACATTTGGCTGCCAACTAGTTTTTCAAGTTATTATAGGTAATTTTTTAGCTAGCTTTGCGAAACAAAACTATTATCATTTTTAAATAAGTCATTAACTTTTTTTCTTTCTAAGTTATTTTTAAATTAATTACTCTCCGCATTTTAAATAAAATAATGTATTTATTAAAAATATTAAAATATTTTAATGCATGTGAAGCATCTTTAAATTTAGACATTAATCCTTTAAATGAATCACTGTTGGCAAACTTCAATATTTCACTGTACAGCTGCCAATAATATTAGATGCACGTACAAATTCACACTTAAGGAAAATAAATATCATTAATGATTTATCAAATAATAAATGCTTAATCAAGACAATACAATTCACATGCATTTATTATTTATGTCCTTTTTTAAATCCCAAAACTTATTATATTCAGCTTTGTTTCTTCTTCTTTTTTTCTTCCCTTGACGTACTTTTTTTTTCAAAATTATAATTCACAATTTTTTTTATTTAATGAATTTCACTAGTAATTCAGCTTCACCAAAC


Gene Sequence:
>Vu_15969(-)
ATGTTACCCAATTCTGTGTTGAGACCTTCTTGTACAATGTCTCGGTATCTTCAAGAAGATAGAGAGGTTAATTAAGTGATTTCATATTTATATTCTTGTGACGCGTTTGGATCAACCGTGCTTATGTTCTTGAAAAGTGATTTTTCGTTTATGTTGATGATGAATTAAACAGGTAAGCAATTTCAATCTACCATTGGATTGCAATAACAATTCAGTTCCATCAAATTCCATGTCCATGACTCCTTATACGATGCCTCAATTTCGTCAAGACAGAGAGGTTAAGTGATTCCATTCATAATCTATTTTCTTGTTCCAAACACGTTCTTAATCCCTAAAAAATCACTTATGTTGATCACAAATTAAGCAGAGAAGCAGCAGCAATTTACTTCCATCAAGTTTGCTACCAAATTCCATACAGAATCCCTTTCACCCGATGTTTGAGTACTGTCAACAAGATAGAGAGGTGAAGTGATTCCATTTAAACTTCAATTATTAACTATTTTATTTTCTCAAAAAAGAAAATGAATTATTTTAACAAATTTCTCAGGCAAACAATTTTATTCTACCAACGGATTTCAATAATAATCTAGCTTCATCCAATATGGTATCAAATTTCATGTCAAATCCCTTTTATTCAATGCCTCAGTATAATGAAGAACATAGACAGGTAAAATGATTTCTTCTAAAATTTTGTTTTAAAAAATGGATTATTTATTGCTTAACTCAATTATACGGCACTTTATTAAATGTTGATGATACTTAAAAATAGAAAACTCATAAAAATTTATGTGTTTGAAGAGACATAGAAAAAAAAATCATAAATGTTGAAAAATAATCGATGTGTATTATTATTCTTTTTAAAAATTAGAAAAATGTGTTCATGATTATTTAACGAATTGTCTCTTGATAAAACAGGGGAGTAATTGCAATCAAGCAATGGATTTCCATAGTAATTCAGTTTCATCAAATGTTGTCTCAAATTCTATGTTAGTGCCCTCTTGTCCTATACTTCATTATCATCAAGAAAACGATAGAGAGGTAAAGTGATTTAGTTTAAACTTCAATTGCTTTGTTTCAATTTCAACCATGTTTGCTTATTTTGTTAGAAAATAACTTTTTTTTTTCTATTTATCTTGACAAATTTAGCGGAGAAACACTTTCAATCTACCATTGGAATTCAACAGTAATTCAGCTTCAACAAATGTGTTGTCGAATTCCATCTCAATGCCCTCGTATCCAGTGCCTCAGTATCGTCCACAAAACATACAGGTAAAATGATTACCTTTTTCTACTTCAATCGCCACAGAATTTATTATGATAAATTAATTTTTAAATATGCATTCTATATTTATTGAAAAGGGTAAATTTTGATTTTGAAAAGGGTTAATCACTGACTTCAAGATTTCCTTTTTTTTTCTACTGTCAAAGGGTTGAATCTTAATCTTACCATAGCTTTTCTGTTTCATGTAAGAGCAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGATGGATATTCAAGCTGCTGAAGGTTTTGATTAACATTTTTTTAAACTATCATATTATTGATGTAATGTAATAAACTAATAAAGATATATACTATGTTTCTTTGTTCCATTGCATTCGATTAACAGCTTGATTTAATGGTGGTATTTGTATTTTCTTACGATGTAATTGGCAGCATTTAAGAGCCAGCACAAGTTGCCGCTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGGTTTATAGTTCTGATTCTGCCACATACTCTGTTGACTGTCTATTGTTAGTTTATAACTGCTATCCATAATTGATCAATGCTACTTCCTGAAAGTCATGTGTTTATAGATGTTACTGTTTCTAAACAACGTTGTTGTGATTACATTATGTGACTGAGAAAACATGTGTAAGCAACAGCTGATGATGGAATGTTTGTGTGGTAAGCAGATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTATCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAAAGTACTGTGCAGCCATGTGACGTTGCTAAGGTTATTATGCAGAATCATGCCATGCAATTCCTCACTGATATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGGTATCTCCATTCTGTTTTCTTTCAATCACTTCCTTAGTAAACTTACTCGGGTTGTTTGTGCACTTGTGACAAAAAAATGTTGTTTTGTTGGAAGTCCTCAAAGGATTAAAAATTAGGCCAATTCATAATAGATAAGTAGGTACAAACCTTATTTTATATCGATTTTATAGGATAAAGTTAGTTTTAAAATTCACTTCTTAATATATGATCACATCAACATGATATCAAAGTTGAGTTAGAACTTGTTTTAACGAAATTGCTTCTTTGTTAAGTATGTTGTTCCATATGTTATTGGAATACTATCAGACTGTTCATTAATATCTAGTCTCATACTTGAAATGTATATGCTCAGAGTAAGGGAAATGTATTGAAAGTCTTATGTCCACTAGAAATAAAGTCAATTAACAGTATATATAAGTGAATGTAAATCTTATCTTTTGCAAACCAGTTTCATAGGATTAAAGTTTACTTTTTAATATGTTTAGAAATCGATTAGTCTGAGTTAAACAAACAAATAGGTTGTTTTATTCAGTTTTGGAAAATGTATAATTGAGTTATGGTATGCTTGCTATATAGCAGGAAGAGCGTACTGCTGGAAACATTGCAGAAGGAAGGCATTCAAGCCAAGCTACCCTGCCTGACACAGCTGGTTTTATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGTAAGTATGAAGTAAATTGGATTTATTTTATATATATGTTGCATAACTTTATGCCATCTGTTAAGTTCAAATATATCTGAGAAAAAAATTGTTATTTCAACTCATGAATGTGTTTAGATAAATTAATGGAATTTGCTGTTGTTTACTTCATAGGGCTTGGAGGCAGGAAACCAGCTGATTCCTCAACCCAACAACATGATGCAGCCTCCCTTTGTTATGCCTTCAGATCAATTTCCTTACAATTTTCATCCCAAGGTAACATAATTCATGAACGTAGTGTTTCATATACATTTTACACCAATGCAAAATAACCTTTTAATTTCCTTCTTTCACATGTTTATGTCTGTTAAAATCAATGTCTTGTCATGATGCAGTGA