Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16003 LG4 13652164 13653661 PREDICTED: LOB domain-containing protein 41
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to hypoxia, regulation of gene expression, regulation of transcription, DNA-templated, cellular response to hypoxia, regulation of transcription, DNA-templated, cellular response to hypoxia, regulation of transcription, DNA-templated, cellular response to hypoxia, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
SNP Position Effect Amino acid change
T/C 13652271 3_prime_UTR_variant
G/C 13652646 missense_variant p.His209Gln
A/G 13652679 synonymous_variant p.Asn198Asn
G/A 13652694 synonymous_variant p.Thr193Thr
T/A 13652768 missense_variant p.Thr169Ser
A/G 13652919 synonymous_variant p.Ala118Ala
G/A 13653088 splice_region_variant&intron_variant
T/C 13653115 intron_variant
T/C 13653148 intron_variant
C/T 13653200 intron_variant
A/T 13653239 intron_variant
A/T 13653269 synonymous_variant p.Arg62Arg
A/G 13653317 synonymous_variant p.Gly46Gly
G/T 13653490 5_prime_UTR_variant
T/A 13653504 5_prime_UTR_variant
A/T 13653616 5_prime_UTR_variant
G/T 13653627 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16003.1
MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSRDENSAASNETQQQRVKTRCRVRRPVANAKPKSTTNENNGDKGTELGSSEPGLVTCEWTEEAVNRSGSHESSLSHQSEAANAVESESMVSVETAETSILFRDEPDSNPKIVQRTDDVGLELTLGFEPVSRAQHVVPVKKRRIELKDFSGSAESGSCKMELGLECSA*


CDS Sequence:
>Vu_16003.1
ATGCGGATGAGCTGCAATGGATGTCGAGTTCTGAGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCCTGTTTACAGTGGATCAAAAGCCCAGAATCTCAGGCCAATGCTACTGTGTTTCTCGCTAAGTTCTACGGTCGTGCTGGGCTCATGAATCTCGTTAACGCCGGCCCAGAACATCTTCGTCCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCAGTTGGTTTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAGGCCGCCGTGGAGAACGTCTTGAAAGGCGCACCGATTACGCCGATCACGTCTGAAGCGGCGGCTAGTGGGCGGGGTCCACCCCTCAAGGCATACGACATACGCCACGTGTCAAGAGACGAGAACTCGGCCGCGTCGAACGAAACTCAGCAGCAACGAGTCAAGACTCGGTGTAGGGTCCGGCGTCCCGTCGCCAACGCCAAGCCCAAATCCACCACAAACGAAAACAACGGTGACAAGGGAACCGAATTGGGGTCTTCTGAACCGGGTTTGGTGACATGCGAGTGGACCGAAGAGGCGGTGAATCGGTCTGGAAGTCACGAATCGTCGCTGAGCCACCAGTCTGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATCCTCTTCCGAGATGAACCGGATTCAAACCCGAAGATCGTGCAACGAACCGATGATGTTGGTTTGGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCAGCACGTGGTTCCAGTGAAGAAGAGACGGATCGAGTTGAAGGATTTTAGCGGCTCGGCTGAGAGTGGGTCGTGCAAGATGGAGCTGGGGCTTGAATGCTCGGCTTGA


Promoter Sequence:
>Vu_16003::LG4:13653661-13655661(-)
TTTGTAAATCATTAATAATTTGGTGTCATTCGAGTGCTAAAACATATATTTTTATTAATTATTTATTGATTATATTAGTAACAAACTTGATACCTACAATTTGTATGCATTAGCTTAAAGGAGAGTGTTATATATATATATATATATATATATATATATATATATTATCTTTATCTTTTATGTATATTTAACACAACATAGATTAATCTCTACATGTATATTTAACATAATAAGGATTAATCTCATACATGATTTCTACTATATTTAACAAACATAATCATTTTAAGTTTTAATCTAATAATTTCATTATTAGTTTTTACATTTTATCTATTTGAAATTGACTAAATGCGTGCCTAAATCGACATTGGTAATTTGTTCTTTGATTAAAATAGATTAAGAGAGTCTTTTCTTAACTTTACAAACAAGTTAGGACACACATTAAGACTATTATTGATCTACCTAACACACATTTTATAGTATATAAACATCATAAAAAAGAGCTAATTAAACATTCTTCTTACTTTTTATTTTGATCGTTTAAGTACATAGTATTTTATAAAAAAATAACTATTTAAAAAAAAACTAAAAAAATAAGTGTATATATATATATATATATATATATTTGCATATTTTAAATATTAAAAAATTATAAACTGTGTCATTTGTATTTTAAGTATTATTGAACTATGATATTATATTTCTCTAATATTATTTTATATGTAATTTGATTTTTATTATTATTTTGATAAAATGATTTTTTACTTTTAAAAGTGTATATATTTTTAAAAGTAGTCAATAAATGTTGATAAATAAATAAGAAGAAATTCCAAAATGACTTTCATCTTCGTATTTTTGACGTATTTGAAACACAATTATTCTTTGATCATTCCCATAGAATTCAGTCGATGTATATGTGAAATAAATTATTCTTTAGCAATAACTTAAATGAGTAAAATTTCATCTAGTAACAAAACGTAGAAATATACCTTAAAATGAAAAGGCGACAATGAAAGCGAGATGTTGAAATCACTTTAAATAGTTAAATTTAATTTATCTAAATTGTAGGACTAACTTTTGAAACCTTAATTTAGATGATCAAAGGTATAGTTTATTGATATGAGTTTTATGAGTAGTTGGAGCATCTTGAATAAATATAATTGAGCAATTTAATAATAATGGGTTAATGTATTTTTGTTGATTTAATAAGATAGTTTTGGTGATTTAATTTTGGTAAACTTTGGATTAGAACCAAACGAGACGTCCCACACGCCCATCTCATCTCCAAAACCATTGGCTTTAATGCTTTTCTCTTTCATCAACCGCGCCCACAGTCATAAGACCAAAACCGGAAACCAGTGTCCGGTTTTGATAAAACCGCTTTCCATCCCATTCCAGAAAACCAGGAGCCTTTTTTCCCGTTTTTCTCTTTTTTATTTTCATTCAAAAACCGCTCTTCGAAGAGAGAGAGAGTGTGTGTTGGTGGATGGATCCTCACTCCACAATATGTGGCGATTCGACCGCACTCTGTCACCTGACCGTGATCGACACGCGCCTCGCTCTTCTCTCCTCAATTTTTGTACCCATTTGCATGCTTTTCTTCATTCCCTCCTTTCCCTTTCACTCTTTTTCCTCTATCTCACATCGCGGTGGCAGATTCCGTAATATTATACCCCTTTAAAGGGCAGTTTCGAAGGAAACAAATTTAGGACAACCGTGCAGTGCAATTTGCGCGAGACACCTCCGAGTCTGTGGCATTTAAGGGTTATCCCACGTCATCTACGCCCCAATGACAAAGGGATGAGTGTCCTTATGATTGGGAGTTGAATGCACGCGTTCCACGTGAGGGTGGGACTGTACCGTGCTAAAACTAGCTGTTTACTTCCTCGAACTGGAACCTCTTTGAACGTGGAAACCATGGTTTGCCTTTGTGTGTTGGTGTTGTAATTATTAAATAAACTACTGCTAATACTATAAAACAATTCTTCTGAAACAACTGCGTT


Gene Sequence:
>Vu_16003(-)
CCCCACAACCCAGTACCTGAAAAATCCACTCTTTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCCTTAACCCCCCAACAAATATATACCCTCGTTTTGCTCAATTCTATGATCACAATCTCATCTTTCTCTCTTACAGAAAGAAAAAAACTCTTCAAATTCTCCTGTCTCCAAGATTCTCAATTGGGTCTTCGAAAATGCGGATGAGCTGCAATGGATGTCGAGTTCTGAGAAAAGGTTGCAGTGAGAATTGCAGCATCAGACCCTGTTTACAGTGGATCAAAAGCCCAGAATCTCAGGCCAATGCTACTGTGTTTCTCGCTAAGTTCTACGGTCGTGCTGGGCTCATGAATCTCGTTAACGCCGGCCCAGAACATCTTCGTCCAGGTTTGTGTCATTTACCCAAGCTTTCTTTTGAACAAATCTAAGTCACACGTCGAGTAGAATCAGTGTTGGATAAATAAAAGCTTGCAATTTGCAAAGTCCGGCACCGATGATCTTGTAAATTGATTTTTTGTGTGTGCATGGAATTTACTAAGCTGATGATGTGTTTTGTTTGATATCTGCAGCGATCTTTCGTTCGTTGTTGTACGAGGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCAGTTGGTTTGTTGTGGTCGGGGAGCTGGCAGCTGTGTCAGGCCGCCGTGGAGAACGTCTTGAAAGGCGCACCGATTACGCCGATCACGTCTGAAGCGGCGGCTAGTGGGCGGGGTCCACCCCTCAAGGCATACGACATACGCCACGTGTCAAGAGACGAGAACTCGGCCGCGTCGAACGAAACTCAGCAGCAACGAGTCAAGACTCGGTGTAGGGTCCGGCGTCCCGTCGCCAACGCCAAGCCCAAATCCACCACAAACGAAAACAACGGTGACAAGGGAACCGAATTGGGGTCTTCTGAACCGGGTTTGGTGACATGCGAGTGGACCGAAGAGGCGGTGAATCGGTCTGGAAGTCACGAATCGTCGCTGAGCCACCAGTCTGAGGCGGCGAATGCGGTGGAGAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGATCCTCTTCCGAGATGAACCGGATTCAAACCCGAAGATCGTGCAACGAACCGATGATGTTGGTTTGGAGCTTACGCTTGGGTTCGAACCGGTTTCACGTGCGCAGCACGTGGTTCCAGTGAAGAAGAGACGGATCGAGTTGAAGGATTTTAGCGGCTCGGCTGAGAGTGGGTCGTGCAAGATGGAGCTGGGGCTTGAATGCTCGGCTTGAGCGACTCGACTCTCGGCTCAGTTTTGATTCCATCGGCTTTATGTATGCCTTTGATACAAGAGATCAGAACCCTTTTGTTGTTTTTTTTTCTTTTAATAATCTTTTTTTTTCTTTTGTAATTGGGTTATTTTTAACCCTTTTATTTTTGGAATGTGAATGCGGTGCAGTACAAACTCAAACATGAATGACAACATAAGTAGATTATG