Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16102 LG4 16058128 16060967 PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, ethylene-activated signaling pathway
Cellular Component   located in   nucleus, nucleolus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
A/G 16058169 5_prime_UTR_premature_start_codon_gain_variant
T/C 16058278 5_prime_UTR_variant
T/A 16058339 5_prime_UTR_premature_start_codon_gain_variant
A/G 16058371 5_prime_UTR_variant
C/T 16058516 synonymous_variant p.Gly38Gly
T/C 16059190 intron_variant
G/C 16059224 intron_variant
A/C 16059318 intron_variant
A/T 16059397 intron_variant
C/G 16059413 intron_variant
G/A 16059466 intron_variant
G/A 16059498 intron_variant
C/T 16059576 missense_variant p.Ala194Val
A/T 16059577 synonymous_variant p.Ala194Ala
A/T 16059580 synonymous_variant p.Ala195Ala
A/G 16059581 missense_variant p.Thr196Ala
A/C 16059721 synonymous_variant p.Gly242Gly
A/G 16059851 missense_variant p.Thr286Ala
A/G 16059907 synonymous_variant p.Thr304Thr
A/T 16060035 missense_variant p.His347Leu
G/A 16060162 synonymous_variant p.Val389Val
A/T 16060165 synonymous_variant p.Ser390Ser
A/T 16060169 missense_variant p.Thr392Ser
G/A 16060391 3_prime_UTR_variant
T/C 16060500 3_prime_UTR_variant
T/C 16060729 3_prime_UTR_variant
T/A 16060740 3_prime_UTR_variant
A/T 16060741 3_prime_UTR_variant
T/A 16060860 3_prime_UTR_variant
T/A 16060878 3_prime_UTR_variant
T/A 16060913 3_prime_UTR_variant
T/A 16060925 3_prime_UTR_variant
T/C 16060931 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16102.1
MSLLTVAYQRGSGEFIRFTADDGGEGEHGYGHDGGSGGSAGFNFNQGMLQQQGEVTMQGGSLVSGYNRGDPELRQMVSALTHVVSSGSDQRSTEWMQQSGYPMMSGFAHAPSLSRLSSFSSSPSPSSGPSGVGQKRGREEQETNTSSSHNLMQQQTAPRLFRTTLADFMLPSQGDSSSVTEEAPTSTTTTVTAAATAVTAVTETTTGDGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQPTTRLTVSDSSTTQFRPLTTAMAAPPFIQPPNMQSSSDLIRDYLQYSQLLQSDFQQQHHQHQHQLQQQQQPQPSSLLQQFYYNAQLASLQSPSLLPSSPSFSSSVSQTPFPLFSTSPQFSSASFPMFSSQQMSYFQPLESLPPAGSRPEMPPSTWSDTGGNPPPSG*


CDS Sequence:
>Vu_16102.1
ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATGACGGTGGTGAGGGTGAACATGGTTATGGACATGATGGTGGTAGTGGTGGCTCAGCAGGCTTCAATTTTAACCAAGGGATGCTGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGCAAATGGTTTCAGCTTTGACACATGTTGTTTCGTCAGGGTCTGACCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCTATGATGTCAGGTTTCGCACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGACCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTCCCAGACTCTTCAGAACAACACTTGCTGACTTCATGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGCTCCCACCTCCACAACTACAACAGTAACAGCAGCAGCAACTGCTGTTACTGCTGTTACTGAAACTACGACTGGAGATGGGGAAAGGAGGAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCCGCAAGAGTTTGGCTTGGAACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGGGCAGTTCCCCCTATTCAACCTTTCCAACCCACCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGACCACTCACCACAGCCATGGCGGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTATTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCAGCATCAGCATCAGCTTCAACAACAACAACAACCACAACCTTCTAGTTTGCTTCAGCAGTTCTACTACAATGCACAATTGGCTTCTCTTCAATCACCTTCATTGTTACCATCATCACCTTCATTCTCTTCTTCTGTGTCACAAACTCCATTCCCGTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGTTATTTCCAGCCACTGGAAAGCCTCCCTCCAGCCGGCAGCAGGCCGGAGATGCCGCCGTCAACATGGTCCGATACCGGTGGCAACCCGCCACCTTCCGGTTGA


Promoter Sequence:
>Vu_16102::LG4:16056128-16058128(+)
GAACAATTTAAGTTTATAGCTCTATGTAAGGCCGTTTGGCCAAGATTGTACGCTTGATTAGTATAAGACTGAACTGATATATTACTAATTGTAATTATTTCTAATGTATGGTTTATTAATGTATTTTTGGGATGTTACAAAGATGTTTTAAACTTCATTTGTTTTTATTATTTTTATTATTATTATTATGATTTATTTTTTATATGAATTATGATTAGAAATAGATATGCGTTACATTTAATAAATACATCTTTTAATGAAAAAATAATTAAAATATTTATAGACTTAGTTTAGCGAATTTATAATTAATCAATAAAACAAAAAATCATAAATACCAGTATATATAAATTGTTATGAATTACAATAGGTGTAAAAGACTTGCACAACATCCAATCACGTTTTATACAAGTATAATTCTTAAATTAATTATTATTAAAATAAAAGCTTACATACATAGTAATTTATTCTGATAAATGAGTGACATGGGAATTGCTGCGTGGCGGTACGGTAACCTTTTGTGTGGACCCCACTCTCTGTATTCGTCTCCGTATCTCGTATTTCTGGTCCACACGTGTAACCTTTATTCTATCACTCAAACCCACGTTGACATTTTTACCATCTTTTCTAACTCTCACTATTATCATATTACATTATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATCAAAGTGGTGGAATTTTTACATAATCATACAACAGTGCAATAATTTTAATTTTAATAATTTATACATGGTTCTATGATAAAAATTTACGGTTTTCACTATCTCGCAACTATACGTAAGCTTTTTCCTTTTTTATGTGAACACATTCATACGTATGATGATACATATATTACTAATAATTAGACATAAACGAACACAATAAAAATAAGATAATTGCATCTTTGGTATGCATGCAAATGATCAATATGGAAAGAATCTGTTCGAAATAGCGACCCAGTAAACGAGTTGACCTTATTTATAACACCTTTAAAGTGTAAAATATTTCTACCAAAATCCAGAAGTGTCAAATGACACATAAAAAGGTAACCAAATTTGAAGAATTCAAAATCAGTTTACAATATGTTTCCTGTTTGAATTTCTTGTTCTTGATCATCACAAAACCAAACTCACGTTCACTTGTCTTCTGCATATCACAGAGCCGTGTTTTGACCATAAATCGCATTCATTCATTCAATTTTTTTACCCGTTTTGGAATACAAACAAATATATATATACATAAATATATTTATGTATATATTGGTATAATATTCTCAAATAAAATGTTTGTAATGTGCTTTATGGAGAACTACCTAAATTTTGTAATCAATATATTTATAAAGAAATTCGCAAGTTGGTACTGTGCCAATTTATCAATTGGCTACAGTTTATGCCTTTATCTTCAACACTTGGTGGCTGTTGCTGGAAAATCATCCACTTGTACAAGTGTTAAAGTGGTCTATAATTTGTTAAAAGAAAAAAAAAATATCTTAAATCAATAACTCTAAACTGCCAATATCAGTGATTGATAAATAATAACAATTAAAGCATACATGTTTATGGTTAATTCTTTTTTTAAAATGTTTTTACCCATTAAATGTTTATGGTGATAGAGTTCAATTGAAACATGATCTCCTCTGTCTCTGTCTCTCTCTCTCTCTCTAGACTGACACCGACAGCATTTGCAGAAGAGACTGCAATAAGATGTTAAACTAGTTAGCTACAATTTGTACTTTCTATCTATTTCTCAGTCAAAGCAAGATTACGTGTGAACATAGCCACCAAAATTCTCAGCCGTGACAGAGAGAATACATATTTTATAATTCACTCTTTTTTTAGTATTTGCCAAAATACCAAAACAATTTCCCTTTCACATATTTCAGAAATCCAAAAACAATTTGTGCACCATGAAAATTAAACTACTAAAGAAATTATAAAGGTGGTAAAAGGGTGTGTGCGTTGAGG


Gene Sequence:
>Vu_16102(+)
GTGAATGTAGAAGCCAGAGCATACGGTACAGGGAAAAGGATATATACTTATAGCTTAGTTTACACTATTTTAATGGTGGCTGGTACCTTAATTCCACATGCTTAATTTTGCAAATCTTTTGCACCCCTTTATTATATAACCGTTTCATCCTCCATAGCATTCCAAAGGGTGTTCCGAGAAGGAATCAAACAACAAAATTTCCAGGTGGATCTTGGTAAATTTGATTTTGGTCCAAAAATAGTAAGAAAAGAAAAACACCATAGTCTATAGTTTTCATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATGACGGTGGTGAGGGTGAACATGGTTATGGACATGATGGTGGTAGTGGTGGCTCAGCAGGCTTCAATTTTAACCAAGGGATGCTGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGCAAATGGTTTCAGCTTTGACACATGTTGTTTCGTCAGGGTCTGACCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCTATGATGTCAGGTTTCGCACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGACCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTCCCAGACTCTTCAGAACAACACTTGCTGACTTCATGCTACCTTCTCAAGGAGACTCATCTTCAGGTGCAACTCCTTCATTACACGACATCCTCAAATTACCATGAAACGTGTTTTTCATATCTACAATCATCACAATCACAGCTCACACATCATTTCATGTCACCCTCATCTCATCTTTTGCATCTAAAACAACAAATGGGGTGTATGTAAATCGTTATTTGCATTATCTTAAACTTTCTTCACCAATTTATTTTATCTTTTCCAAACATCCCAATTTGTTGAATGAAACATGCAGCATCATTAGTCTGTGTTAAGTGTTCAGAATCAAGCACTCATCCTTCTTTTCATTGAATCTCCTTCCCTGCCACCTAGTGCAGGGGAAAATCATTCTTGCTGCTTATATTGCATGCATAAACACCTTCCATTTCTCATTTTCTTTTATCAAGTAGATTTTCATTTTCCAAAACCATGTTATCACAAAGAAAAGTTTACCATGCTGAACATGTTCATTACTCATCAGTCACATACTCAAATACCTCCAACTACAAGTACAAACACCATGGTTCACAATTAAGCCATTTATTACACAATGGCATGTTTCTCCACACTAGTGCAGATGTTCTGTGCCTTCTATCTCATCTTTTGAATTTAACCAGTGACTGAAGAAGCTCCCACCTCCACAACTACAACAGTAACAGCAGCAGCAACTGCTGTTACTGCTGTTACTGAAACTACGACTGGAGATGGGGAAAGGAGGAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCCGCAAGAGTTTGGCTTGGAACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGGGCAGTTCCCCCTATTCAACCTTTCCAACCCACCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGACCACTCACCACAGCCATGGCGGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTATTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCAGCATCAGCATCAGCTTCAACAACAACAACAACCACAACCTTCTAGTTTGCTTCAGCAGTTCTACTACAATGCACAATTGGCTTCTCTTCAATCACCTTCATTGTTACCATCATCACCTTCATTCTCTTCTTCTGTGTCACAAACTCCATTCCCGTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGTTATTTCCAGCCACTGGAAAGCCTCCCTCCAGCCGGCAGCAGGCCGGAGATGCCGCCGTCAACATGGTCCGATACCGGTGGCAACCCGCCACCTTCCGGTTGATCCAATGTTTCAGCTTCCTTCATATTCTCCTTTTGGTTTTTTGTTGTCTTACCCTTTTTCTTTCTTTCATACTTAGGATAAAAAAAACTTGTTTTACTTATTTTCAAGGATAAAACTTAAAAACAGTTTTTTTAAGTATATTTTGTCACTATTATTATCAAATCAAAATTAGAGTTTCAGTTTATACAGATATTTAATCCAAAATGATAAGATGAAACTCTAATTTTGAAAAAAGATAGTACAAAAGATACCTAACTATAAGTTTGTTTAAGTTTTGTTCCTTTGTGAAATGATGGTAAATTCCTTGAACATGTAGTTTTGGAGTTAACTATTGTTTTGTTCGTATTCTTGTAAAGAAGATTATTTGAAAAGAGAAAAGGTGGTTGAAGGTTAAAGACAAAGTAGCATTTAGGTTTTTTAGGGTTATAGTTTATTTGAAATTCTGAATGGAGATGATGTTAACATTCTCCTAGATATATATCCATGGAAAGATGTAGAACCTCATAGCTTTTACATACTCTGTCTGCTATCTGCTATACAACCACAGATTTTATCAAAATGTTCTTATACTTTACTTCTTTTTTTAATAATATTTTGTGGAGATTTATTTAGTCATCAT