Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16164 LG4 17689770 17692664 PREDICTED: trihelix transcription factor GT-2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to bacterium, response to lipid, regulation of transcription, DNA-templated, developmental growth, phosphate-containing compound metabolic process, porphyrin-containing compound metabolic process, response to radiation, regulation of transcription, DNA-templated, phosphate-containing compound metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, porphyrin-containing compound metabolic process, response to bacterium
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
G/A 17689836 missense_variant p.Thr549Met
G/C 17689857 missense_variant p.Thr542Arg
C/A 17689861 stop_gained p.Glu541*
A/C 17690238 missense_variant p.Leu415Arg
T/C 17690241 missense_variant p.Asp414Gly
T/A 17690247 missense_variant p.Gln412Leu
G/A 17690553 missense_variant p.Thr310Ile
T/A 17690791 missense_variant p.Arg231Trp
G/A 17690972 synonymous_variant p.Leu170Leu
A/T 17691738 intron_variant
C/A 17691821 intron_variant
T/A 17691847 intron_variant
A/G 17692138 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16164.1
MLGDSAVLGTGGGGGKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKSEGKTYRFFDQLQALENNPAIHPIQSPTPPPSKPPPVTTTALPATPLSIVVTTTPSSIMSLPPTTTLPLSPATVPSPTTLPVPQGILALTTSSFPSSNPTPYFPTQTPNPTTNNTNSKNPQNTIAPPSFPNIPTDLLSNSSSSSTSSEETTTEGGGARRKRKRKWKDFFERLMKEVIEKQEELQRRFLEAIEKREQERVAREETWRRQEMQRINREREILAQERSIAAAKDAAVMAFLQKMAEHQQEENNLQPALNTNNNNIISIAAQQPVPQATPTPTPQQKQTTTVPEAPPVQSLVPQPQQHQVQQQQQLVMTNVETNKADNNGENLMMGASSSRWPKVEVQALIDLRTNLETKYQENGPKGPLWEEISALMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLEALYKEKNKVEGQMKPESMMAPLMVQPEQQWPPQQVVPPEVTMEDAQNDPMDGGHHEDGEEEEEEEDKDIGDEDDDEDDEGGNYEIVASKPASAGDASAE*


CDS Sequence:
>Vu_16164.1
ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGAGGGAAGCTGGCAGATCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGCCGCAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATCCTATCCAATCCCCAACACCACCACCTTCCAAGCCACCACCAGTAACAACAACAGCACTACCAGCAACACCACTGTCAATAGTTGTAACAACCACACCCTCTTCAATAATGTCTCTTCCCCCGACCACAACGCTGCCATTGTCACCTGCCACTGTTCCATCACCAACAACACTCCCTGTGCCTCAAGGCATTCTCGCCCTCACAACCTCTTCCTTCCCATCATCAAACCCTACACCATACTTCCCAACACAAACACCAAACCCTACAACCAACAACACCAACAGCAAGAACCCTCAAAACACCATCGCCCCACCTTCTTTCCCCAACATTCCGACTGATCTCTTGTCCAATTCCAGCTCTTCCTCCACCTCTTCGGAGGAAACAACCACGGAGGGAGGGGGAGCAAGACGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTGATAGAGAAACAGGAGGAGCTGCAAAGGAGGTTCCTGGAGGCCATTGAGAAGAGAGAACAAGAGCGTGTCGCGAGAGAAGAAACGTGGAGAAGGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTTGCACAGGAAAGATCCATTGCTGCCGCTAAAGACGCTGCTGTTATGGCATTTTTGCAGAAGATGGCCGAACATCAACAAGAGGAAAATAATCTTCAACCAGCATTGAATACCAACAACAACAACATTATCTCTATTGCTGCACAGCAACCGGTGCCACAGGCAACTCCAACACCAACACCACAGCAAAAACAAACAACAACTGTTCCCGAGGCCCCACCAGTGCAGTCCTTGGTCCCACAGCCACAGCAACATCAGGTGCAGCAACAACAACAACTAGTGATGACTAATGTGGAAACCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGAGCGAGTTCTTCGCGGTGGCCAAAAGTGGAGGTACAAGCGCTGATAGATCTGAGAACAAACCTGGAAACAAAGTACCAGGAAAATGGACCAAAAGGACCTCTATGGGAGGAGATCTCAGCTTTGATGAGAAAAATGGGGTACAACCGGAACGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGCAACAAGAAGAGGCCAGAAGATTCCAAGACCTGTCCCTATTTTCACCAGTTGGAGGCTCTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCATGATGGCACCCCTCATGGTGCAGCCGGAGCAACAGTGGCCTCCTCAGCAGGTGGTGCCCCCAGAAGTAACCATGGAAGACGCCCAGAATGACCCCATGGACGGGGGGCACCACGAGGATGGTGAGGAGGAGGAGGAAGAGGAGGACAAGGACATCGGAGACGAAGACGATGACGAAGACGACGAAGGTGGTAACTATGAGATAGTAGCAAGCAAGCCAGCTTCGGCCGGTGATGCTTCTGCCGAGTGA


Promoter Sequence:
>Vu_16164::LG4:17692664-17694664(-)
CGAAAGAAGTAATATGTTATTTCACTATAAATGGTTGACCGTAATTTTAAAATAGGAAGGATTCTACCTTATCTTTTATTAATAAAATAGGTCATAAATTAATGTCTCCTTGAATAAGTTATTTTCTTTAAATTTTAATTATAACAGGAGTATTTTAAACTTCTATTTTCATGAATTAAGTACAATTTGTCAAAATTGTGATGGTCACCATCACGTGTAGGACCCAAAGGCCACATGTGGAGTACCACACAGTACAAATTTCTTCTCTTTCAAATTAACTTTATCAATAAACTAAACGTGTTTTCACATTATTTTATGCTGTTATATTCTACTTATGCAACATCAATTACTATTGTCAATATTTAATATTTAAAAAAAACTCAATCCATACTTTTTATGAAATTTTATGTCACTCATTCTTTTATCATAAGTATATGTCTAAAAAATTTCATATATAATAAACATCGAATTTGAAAGTTTTTACTAAATTATGTATTTTAACAATAATAAATTCACACGATATCAAATACTATATATTACCCATTGCTTTGTACACAATTTATTTATCTATTTTTTAAAGATAAAATGACAAAGAAATAATTAATTTTAATAAAGTTTTGCATGACTTAAAAGTTGAAATATACACATTTTAACATAGTTGATATAAGAATATTTTGACAGTTGATGTCAAAAATTGTGGTTAGAAAAAGATTGAAGTGATTTGCAGAGAAGGGCAGTTTGGAGATTTGAGAATTGAATGAAGAATGTTAAAGCAAAATAAAAAAAAGGAAAAAGAAATGAAAGTCTTAAATAGAAGGGGGGACAGGCTCACATCATACTGACCTGTTAATCTAAATAAAAACACATCATAGATTAACTTCAATGATTAAAGGTCAATGCAAGAGCCATGTTCATGTCCTGTTTCGTCATTTTAACTCAATCTGCCCAACTGCCACTGAAATCCAAAACCCCAAAAATATCATCAAACAAAAAGCATACTAAAGATAAACTTCATCTTCTTTCTTTCTCCCAAGAAAAAAATAAAAATAAAAATTAATTTTTCAAAGTAAAAAAGAAAAAGCTGACTTATATGAGTCGGCCTTTAACTAAATTTAGCTGCACAGACAAAACCGAGTTATTATTTCCATCGTCTCTTTCTACACCTGTTCAAAACCCTCTGCACCAGTTATTCATCAATCTTTATTTTCTCCCTCTGTAATAAAACGATAAATAATAAATAAATAAAATACTTCCTCTATATACATATATCTTTCTGTGCCACTTTTTTTATTACAGTGAGAGAAAACCAGGTGCATGAATTTAGTAATTTACTTTCCCCAAGATCACAACTTTAACAAAAAAAATAAAATAAACTTTAAAAACAATCCAGGATTCCACCTTCAATTAAAATAAAGTCAAGTGCATTAATTTTAACATTACTAATCAATTAACAGAGTTGAATGGATTTTCTGAGTGCAGGTTATGGTAATTAGTATTAAAATTAAAAAATTTAACGTGTTTATTTTATTGATTAATATTGATGATGGAAGTGTGTATTTTATTTATTTATTGAATTATTAAAAAGGTGAATAAAATTAACCATATTTGATGATATTATTTATGTAAATAATGAAAAAGTAAAAAAAGAAAACATTTATTGTGTTTATTACTGACATGTACATACAAACAAATTGAATAAAGGAGGAAAATAATAAAATTCTTGAGATTAGTATTACCAGGCAGATCCCACCCAAATAAATTAATAAATTCACCGAACATACACGTTCATACACACATCTATGATAAAACCCATCAAAGAATTCACCACCCTTTTTCTCCTCTTCTTCTCTTTTTTCCCCCACATATTATTTTTTTTCCTCCTCTGTAATTGCCTAGGTTCTGTGCTGTTTTTGAAGAGAGAGAAGAGAGGTAGAGGTAGATAGAGACCACAGAAAAAAGAGAGAGAGAGAGGGGGGTGAGAAAGAGAGAGAGAGAGTCCT


Gene Sequence:
>Vu_16164(-)
ATGCTGGGGGACTCAGCAGTGTTGGGAACAGGAGGAGGAGGAGGGTCTGCAGATGCAGTGGTGGCAGCAGGAGGGGGTGCTGTTCATGACGGTGCTGTTGACGTGGCAGGGGGTGGCGGCGGCGGTGGCGGAGGATCAAATTCAGGGGATGATGAGAGGGGGAGAGTGGAGGAAGGTGACAGGAGCTTTGGTGGGAACAGGTGGCCGAGACAAGAGACTCTGGCTTTGTTGAAGATACGGTCGGATATGGACGTGGCTTTCAGAGATGCAAGTGTGAAGGGTCCTTTGTGGGAAGAGGTTTCAAGGTGAGTCATTGAATTCGGTCTTAATTGTTTGGTTTTGAGGTTTTCTGTCTTCATCACCTTATCTGGCTGCTGTGGTTACTTCAAGTTTGCTGCTTTGGAGATCTGAAAAACTCTCAATTATTGTTCAAGATTTGCTCTTTCGTCTCCTGGGAATGTGTTTCACTTCAATTCCGTGTTTTTTGTTTCCTTTGAGGTTTCTGCAGAGCTTTCGTTTGGATTTGTTTAATTCAGTTTCAGTTTTTATGTTTCTTTCATTCTTAATCTCTGCCAGCTATAGTTCTCTCTCTCTCTCTCATCACCTTTTCCTGTTCCTTCTTTTAAGTTGTGTAGAAGGACTGTTTGTGAAAAGATGTAATTTAGAGTTGGATATGTGATGTGGTTTTTTTTTTTTTCTGACATTCATTTTGATACATGTTGCGTTTACCAAATAAGTTGGCAACTTAAATTGGGTCTTGAAAAGCAACATTTTCTTCCACCTTGTTTCAGTTAGCCAGTCTTGGTGGGAATGAAAGAGGTAGATTGCACAATCTTCTAACTTGGGTTCATGTGTTGTCCATGGGAAGAGTTTCCGTTTCACCAATTCATGGTGTTTGATATTATTAATATCAATATTATTATTGTTGTTATTATTTAATTAAAGCTTTTACTCCAGTTACATCATCAATTTTGATATTATTATATATTCTTCTTTAATTTCCTTCCCTTGTTTTAAGGTCTTCAGTTACTTCCTTTCCCCTCCATTTCCGTTCATGGGTACTTGAAATCCTGAGATGTTTAATACTTTAACTTGCTTCTTTTGTATTATCTTATGCTTCTTTCTTCCATTGCCAACTATGTGCCATGGACTTGATGAGAGATAAGATAACGCCACAAAGCTTGTTTTTTTACTTTGTCTTCTTTTGGGGTTATTATTACTATCAGGAAGCTGGCAGATCTTGGCTACCACAGAAATGCCAAGAAGTGCAAAGAGAAGTTCGAGAACGTTTACAAGTACCACAAGAGAACCAAAGAAGGCCGCAGTGGGAAATCAGAAGGCAAAACTTATCGCTTCTTTGATCAATTACAAGCCCTTGAAAACAACCCTGCAATTCATCCTATCCAATCCCCAACACCACCACCTTCCAAGCCACCACCAGTAACAACAACAGCACTACCAGCAACACCACTGTCAATAGTTGTAACAACCACACCCTCTTCAATAATGTCTCTTCCCCCGACCACAACGCTGCCATTGTCACCTGCCACTGTTCCATCACCAACAACACTCCCTGTGCCTCAAGGCATTCTCGCCCTCACAACCTCTTCCTTCCCATCATCAAACCCTACACCATACTTCCCAACACAAACACCAAACCCTACAACCAACAACACCAACAGCAAGAACCCTCAAAACACCATCGCCCCACCTTCTTTCCCCAACATTCCGACTGATCTCTTGTCCAATTCCAGCTCTTCCTCCACCTCTTCGGAGGAAACAACCACGGAGGGAGGGGGAGCAAGACGCAAGAGGAAGAGGAAGTGGAAGGACTTCTTTGAGAGACTCATGAAGGAAGTGATAGAGAAACAGGAGGAGCTGCAAAGGAGGTTCCTGGAGGCCATTGAGAAGAGAGAACAAGAGCGTGTCGCGAGAGAAGAAACGTGGAGAAGGCAAGAGATGCAAAGGATCAACAGGGAAAGGGAGATTCTTGCACAGGAAAGATCCATTGCTGCCGCTAAAGACGCTGCTGTTATGGCATTTTTGCAGAAGATGGCCGAACATCAACAAGAGGAAAATAATCTTCAACCAGCATTGAATACCAACAACAACAACATTATCTCTATTGCTGCACAGCAACCGGTGCCACAGGCAACTCCAACACCAACACCACAGCAAAAACAAACAACAACTGTTCCCGAGGCCCCACCAGTGCAGTCCTTGGTCCCACAGCCACAGCAACATCAGGTGCAGCAACAACAACAACTAGTGATGACTAATGTGGAAACCAATAAAGCTGATAATAACGGTGAGAATTTGATGATGGGAGCGAGTTCTTCGCGGTGGCCAAAAGTGGAGGTACAAGCGCTGATAGATCTGAGAACAAACCTGGAAACAAAGTACCAGGAAAATGGACCAAAAGGACCTCTATGGGAGGAGATCTCAGCTTTGATGAGAAAAATGGGGTACAACCGGAACGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAAGAAAGCAACAAGAAGAGGCCAGAAGATTCCAAGACCTGTCCCTATTTTCACCAGTTGGAGGCTCTATACAAGGAGAAGAACAAGGTGGAGGGCCAAATGAAGCCGGAGAGCATGATGGCACCCCTCATGGTGCAGCCGGAGCAACAGTGGCCTCCTCAGCAGGTGGTGCCCCCAGAAGTAACCATGGAAGACGCCCAGAATGACCCCATGGACGGGGGGCACCACGAGGATGGTGAGGAGGAGGAGGAAGAGGAGGACAAGGACATCGGAGACGAAGACGATGACGAAGACGACGAAGGTGGTAACTATGAGATAGTAGCAAGCAAGCCAGCTTCGGCCGGTGATGCTTCTGCCGAGTGA