Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16615 LG4 26780226 26781006 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   RNA polymerase II transcription regulator complex
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding, RNA polymerase II transcription regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
G/T 26780454 missense_variant p.Thr134Asn
A/T 26780591 synonymous_variant p.Thr88Thr
C/T 26780612 synonymous_variant p.Glu81Glu
T/A 26780797 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16615.1
MDENKKWMHKETERQRRQEMGKLCNNLRSLLPLEYIKGKRSTSDHVHEAMNYINHLQDKVKQLQEKRDALLKVSNNLSSIENESSSATHLPPLVLVHPFPGGLEIICSHSFRKSAFPMSRLLDILHKEGLNVVTTTSIRRDGRFIHTIQSEDPNHSNMVDTDYSELQIKITEALSSSSK*


CDS Sequence:
>Vu_16615.1
ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCAACAACCTCAGATCGCTTCTGCCTTTAGAGTATATTAAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATGAATTACATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGAAAAGAGGGATGCGTTGTTGAAGGTGTCTAATAATTTGAGTAGCATTGAGAATGAAAGCTCTTCTGCCACTCATCTTCCACCTTTGGTTCTTGTTCATCCTTTCCCTGGGGGCCTTGAGATTATTTGCAGTCATAGCTTCAGGAAAAGTGCGTTTCCCATGTCAAGATTATTGGACATTCTGCATAAAGAAGGACTTAACGTGGTCACCACTACTTCCATCAGAAGAGATGGTAGATTCATACATACCATACAATCAGAGGATCCCAATCATTCTAATATGGTTGACACTGATTACTCTGAACTGCAAATAAAGATTACGGAGGCATTATCATCTTCAAGTAAGTAG


Promoter Sequence:
>Vu_16615::LG4:26781006-26783006(-)
GAATGGTATTTCTTCCACAATACAATTGAACCATTCAACTACTTCCACCAACTAGGTCAAATTTACATTTTCCCCTAATCTTTCTAAAATTAACTATTAATCTATAAGTGATTTAATAATATTTATATTCTGCCCATTAATTTGCTTCTCAAAAGATTCATTATGGGTCATCTGCAAATTGAGTTTTGTCATTTCAAAGTTCCTTCCCCACCACACAAACTTTTTAGCAACTCTACAAAATTTCAACCTTTCTAACTATAAAATAAAGAAACATACATGATTCTTTTTCCACTAAATGTCTTGGAGACACTCTCATTCTCCAAAACAAAGAGAACTCAAACTTTTTTTTAATTCAAACAACTTAAAATCTATACCTTTTCCCACTATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATACTTCCTTCCAATAATAGTAGGCTGGAACTGTTTAAATACTGAATATATCCTTCGTGTTACATGTATATAAATATTTTAATTTGTGCTTTTTTATCTAATTTTTATATACACATGTCTCAGAAAATCCTACAATTAAAGGAATTATCAATAAAAATTATACCATTCCAAATATATAATAAACAATTTTTAAAGAAAGAGCCATCATGTCAAAAGTTATGACAAAGAAGTAGAAAGTAAGAAAAGGAAAGGTGTAAAATGTCGAGTTCAAATTCTGTACTATTTTTTTTATATTGTCTAAATACAAGTCATAATAACACTTTTTTGTATTCTTGTTTTTTTTATGTTAAATAACATTATCTTAACCAATAATATAAAATCTTCTCCTAAGTTTGTATATGTTTCTTGTTAAAAGAGTTAGAATACTCCAAGCCCTCTACTTTTATTATAATATTTTTTTTCTTATAAAAAAATAGAAGATCTTCTAAAAAAAATTAATATACCATGGTACAATTCTTTTATATACAATCATGTATTTGGGTGGTATAGAAATTAGACCATTCACTAAGGATTATGGCTTATAAGCCACTTAAGTGTCAACTGCCCTAGATTATAAAATTCCACGCACCAGTTTTTATTTTTATTTTTTCAAGTAGATTAATTAAGTTGTAGAGAATTTTTTTTTTAGCGAACTTGAAAGGTGGATGGACTTCAAAATAGCTAAGCAATAAGAATATATTTAACTGAAATATCAATGGGCAGTAAATTATATACGCTAATATAATGTGATAGCAAAAAATGGATAAAATATTTAATAGATGTCTAAATAAATGCTCCCTGTTAACAATGAATCCTATGGATTTAAGCATTACTTTCTACTAAAATCGATCCCATCATTGTCTGTTCTGTACCAACAAAAACAAGAGCTATGGTCACTTCAGTTAATCAGAAGCACAACAATAATAATATTATGAGAGAAAGGGAAAAGAGTTAAAAGCTATATATGTATTAACATATATATATATATATATATATAGAGTGTTAATCTGATTTAAAACTTCCTCATAGTATCAGTTTCAACTACTCTTTTTTGACCAAAAAAAAATCTATCCCTTTTCATTTTGAAGGTAAAAAAGCTTAAGTTAACATACCTACCAAAAATAAGGAAAGTAAATAACATATAGGTTGATGATTATTCACATTCAAAAAAGACAGGAAACACTGTGTCCCACCAAAGAAAAAGGAAACATAAATATGAGTACTGATATGGATGGATTGTAATCTTATGTGTGAAGGATTTCAGAATCCTATAGCATATCAGGAGAATGGAAAGTAGTCTCAAACCCTAACAACCACCTACACTTGATTTTCTTGTTTTGGTATCTTCGCCACCCCCAAAAAGCTACCATACACAATCATGAACCTCTCCACTCCCAGTCATCAATAGTTTCATCTTTTCAGTTTTAATTTGCTCATTATCCTCTCTCAAACTTATTTAACTGTTTAATAACATCATCAGATCTTGTATGGTCCTCTGATGCAATGTTGATGCATGTCAAATGAGAAAGAAGATTGAGCT


Gene Sequence:
>Vu_16615(-)
ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCAACAACCTCAGATCGCTTCTGCCTTTAGAGTATATTAAGGTAAGCATCTTCTTCGGACAACAACTTGTCTTTGAAACTGTTTGTTTCTTTAATTTTCTCTTCTTTCTGGTTGGAATTTAAGAGTAATTGAAATTTGAAACACACTAGTCATTAGGGGTGCTTTTATTCCATGTCTTGATGACCATCATCAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATGAATTACATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGAAAAGAGGGATGCGTTGTTGAAGGTGTCTAATAATTTGAGTAGCATTGAGAATGAAAGCTCTTCTGCCACTCATCTTCCACCTTTGGTTCTTGTTCATCCTTTCCCTGGGGGCCTTGAGATTATTTGCAGTCATAGCTTCAGGAAAAGTGCGTTTCCCATGTCAAGATTATTGGACATTCTGCATAAAGAAGGACTTAACGTGGTCACCACTACTTCCATCAGAAGAGATGGTAGATTCATACATACCATACAATCAGAGGTACATGTCAATTTATTTTCCATTGAGCATTATGGTAACGGTTTTGAAACTGATCATTATTGTTTCGTTCTGTATAAACTGATCTGAAGGATCCCAATCATTCTAATATGGTTGACACTGATTACTCTGAACTGCAAATAAAGATTACGGAGGCATTATCATCTTCAAGTAAGTAG