Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16857 LG4 29399333 29401072 PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of response to salt stress, response to ethylene, response to ethylene, response to ethylene, response to ethylene, regulation of developmental process, regulation of plant-type cell wall organization or biogenesis, positive regulation of response to salt stress
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, sequence-specific DNA binding, DNA binding, sequence-specific double-stranded DNA binding, DNA binding
SNP Position Effect Amino acid change
T/A 29399829 intron_variant
T/G 29399833 intron_variant
A/T 29400053 synonymous_variant p.Pro37Pro
G/A 29400155 synonymous_variant p.Thr71Thr
A/G 29400228 missense_variant p.Ile96Val
C/G 29400231 missense_variant p.Pro97Ala
G/A 29400275 synonymous_variant p.Pro111Pro
C/T 29400543 missense_variant p.Pro201Ser
C/T 29400590 synonymous_variant p.Cys216Cys
G/A 29400609 missense_variant p.Val223Ile
T/G 29400817 3_prime_UTR_variant
C/A 29400826 3_prime_UTR_variant
G/C 29400867 3_prime_UTR_variant
G/A 29401042 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16857.1
MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSGTNGAFHHRDIGMSHATYPMEYTRDAWISSYRDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEEREVEEEAVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR*


CDS Sequence:
>Vu_16857.1
ATGGATGGTGATAATGGTCTCAACATCCGTAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAGCCATTAATCGGAGGGCGCAATGCTGCGGTTTTATCTGGCACAAATGGGGCATTTCACCACAGAGACATTGGTATGTCCCACGCGACATACCCTATGGAATACACGAGAGATGCTTGGATTAGTAGTTACAGGGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCAGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAATTGCCGAAGGAAGAAAGGGAAGTGGAAGAGGAAGCTGTTGTTGAGAAGGCAACTGGGGGCAGTCGTAAGAAAAGACAGAGTCCTAAGGTGCCGAAATCTCCCAAGGCAAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCAAGGGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGAATAGACATGGATATTTCTAGTATTCCAATCCCTGTTTGTTCATGCACAGGAGCACCTCAACAGTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATGCTGCACAACAGGCATGTCAGTTTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTCAAGAAAGTTTTGGAGAAACTTGCAGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAG


Promoter Sequence:
>Vu_16857::LG4:29397333-29399333(+)
GTTTTATTATAATTGATAATTTGAATTTTATTTGAAAGTGTTAATAATTTAAATTGTAACATTATTGATATAATTCAAATTATTATTAATTAGAGCATCAAATTCATATTGCATTGCAGATTTCTAATTAAGGTTTGAGAAAACAATTTTGAGATTTTTGAGAAAAGGTGATATGGTCAAGTCATCAATAGAAACAAAATGGTTAAAGAGTTTTCTGGGTTTGTAGGCACTTGTCATGCTATAGGCTTCAACGGTAGGTTAGGCTGGTTTAAAGTGGGTGAGGTAGATAAGCTAGTCGTGAAGGTGGATGCGATGGATGATGAGAAGAGTAATCTCGTGGGCTATGGTTAGTCAAAGGTTTCATACCAAAGTTGATCTAGGGATGAAGAGAGGGATGTATATCATTAATGAAATGGTTATAAGTATATATAAGAGAGGAAACCATATTGACAAAAGGAAATTGTATTTCATAAAAAGTGACATGTGATAATATTATTACCTTTTTGTGCAACAAATCAAAACATTTATAACCTCTATAATTAAGGGAGTATCCTAAAAAAACACAAGAAGTAGTTTGTGGTTGTAGTTTGTTAATGGTAGGAGAGTGAAACAAAGGATAACAAAGATAACCAAAGACTCACAAATGAGTATAGAAGTGAATGCTCCATATTTGGTTAATGTGTGTTTCTTGGTGACAACCTAATATCTTGGTCTTCAAAGCACTTACACATTTTTTCTGAGACTGAATATAGAGGTGTTGCAATTTGTTATTGAATCTTGTAGACTTCACAATCTCCTTCTAGAGCTTCATTGTCCTCTCCCTTAGGCTATTTTGACATACTGTGATAATGCTAGTGCTATTTATCTATCTAGTAGTTATGTGAAGCATCAGTGCACAAAATCTATTGAAATGAATATTTACTTTGTTTGAGAAAATATAGCATGTGATCAGACACAAGTTCTTCATATCCATTCCGGCCACCAGACCGCTAAGATCTTCACTAAAGGCCTATTTTGAATTCTTTTTTATAATTTTTGGACTAATCTAAACGTTCATGAATCTTTCACTTAGACTACAAAGTTGTAATAAAATCCAAATTATTCTTATAAAATTAAGTCAACTAACCATTGATTTCCTATAATTAAACTAATCATAACAATATATAATTATGAACACCGTAATTACAAAAGATTCAATAACCTAATTAAAATGTTTGGAATCATTTTGTTATGTCCAATGAAAATTAATTCACACATTTAAATTATTTTTTACTCTTACAATTGTTATACATCTATTTCATTCAAATAATATATTAGAAAAAATATTAACTTTTTCATATTATTTTAAATTTAAACAACATAATAAACCTATTCCATCCATCTCATGATAAGTTAAGTACATTAGACTATAACATTTTCACATGTTAAACCATCAAATTTTAAGCTAGTATGGGAGGGTTCATTGACCTTAAAGCACTCTTAACACCTATGAGAAACATCTCATGAATCACTAAAATATAAAAGCATCCCCATTCATTAAACATTAAAAAAAAGAAATCACCAAATATTTCATCCTCTTATTTTTCTTTTTTAAGAACTCCAGTTTTTTTATATTTTATTAATTGCATAAAATTAACTAATGTTGCACATATTGCCTTCTTTTTATAACTTACAATCCATTGGTGAGTAGGTTTTTAATTTTCATTAATCAATAACCAATGTACAACTTGCATATTACAATATATTTTTGAATAATTTTTTTGTTATCGTAATAAAATGACTATCATGGTATCTGGAATCCTAAAATGGAAAAACAAATGAAAACACATTTAAAATGGGGCAATTTGCAGACGAAGAGAAAAGAGGGATGCGACTAAGTATACAATTATTTATGCTGTGCTGACTGAGTATTGGTCACTACAATTTGCACATTTTGCATTTGAATACAATATTTTAAATATTACTTTAATATTAGAATCTCATAATTTTTTTTAATGTTG


Gene Sequence:
>Vu_16857(+)
GAGATTAGATTTTAAGATGGCGTGCAGACATTTTTGTTCCTTTGCTCTCTTCATTTTCCATTCGTAGACGCCAAGAACCCTAACAGGTACTGCTCCCTTTTCCCTCTGCTCAAACATTCTCTTGCCCTCTTATTTTTTCTTCAAATCATTGCATGGGTTCACATCAAAATCTCTTTTTTCTCCCATTTTCCCACTTTCATTTTAATCTTAGATTTTGTTGATCTGTTTGGTTTTTACCTCAAAGATCTGATTTTTGCTTACTTCTTTTTCATGCTAAAATGGATCTTGATCATAACCCAGAAGCTGAAATATTTGGGGAAGGTGGTTTTGCATGTGTGCATTTATGGGATTTGGATAATTTACCCCGTTTACTGGTTCGACTTTATTTGAGCTCAAACAAAGGTGAGTTTTTAGGTCAGACAATTGCATTCTGCTGTTTTTGAAGTTGTAGTTGTTTCACTTTCTGTTTACCGTGTTCAATGCGTTTGTTTTTAATTGTGTTGGTTTGTTAGGAGAATGCAATGGACTTGGATAATCTGTGAGGATATTTAACATAGTGTACATTCACTGGATTGTATACCTGCAAATAGTTTCATCATTTGGTGTTGTGATGGATGGTGATAATGGTCTCAACATCCGTAACTGGGGTTACTATGAACCGGCCACATCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAGCCATTAATCGGAGGGCGCAATGCTGCGGTTTTATCTGGCACAAATGGGGCATTTCACCACAGAGACATTGGTATGTCCCACGCGACATACCCTATGGAATACACGAGAGATGCTTGGATTAGTAGTTACAGGGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCAGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAATTGCCGAAGGAAGAAAGGGAAGTGGAAGAGGAAGCTGTTGTTGAGAAGGCAACTGGGGGCAGTCGTAAGAAAAGACAGAGTCCTAAGGTGCCGAAATCTCCCAAGGCAAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCAAGGGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGAATAGACATGGATATTTCTAGTATTCCAATCCCTGTTTGTTCATGCACAGGAGCACCTCAACAGTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATGCTGCACAACAGGCATGTCAGTTTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTCAAGAAAGTTTTGGAGAAACTTGCAGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAGGTCTCCTCTATCGTCAACTAGCTTCTTATTCCTTTCAATCTGTTTGTCATGTATATATATGTGTAGTGGCCAGAGACTGAGGCTTCTTAGTGGTTTGTAGTTCCAGAATTTTCGAGGTCACAAGACATTTCCTGTTCTTTTCTGACTTTAGTATCATCACTTCTTTGGATTGAGTGCCTGGGTATTCAATCATTCGGTTGGTGGGTTGGTTCTGACAGGGAACAAGCTGATAGCATCTTGTCTTATTGATATTTAGAAGTAAATTTTATCAGTTCATG