Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_16876 LG4 29586399 29587352 PREDICTED: mitogen-activated protein kinase kinase 9-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to salt stress, leaf senescence, camalexin biosynthetic process, positive regulation of transcription, DNA-templated, ethylene-activated signaling pathway, ethylene-activated signaling pathway, response to wounding, response to fungus, protein autophosphorylation, response to salt stress, cellular response to hypoxia, camalexin biosynthetic process, ethylene biosynthetic process, ethylene biosynthetic process, ethylene-activated signaling pathway, protein autophosphorylation, camalexin biosynthetic process, protein autophosphorylation, response to fungus, leaf senescence, positive regulation of transcription, DNA-templated, camalexin biosynthetic process, cellular response to hypoxia, protein autophosphorylation, protein autophosphorylation, cellular response to hypoxia, ethylene-activated signaling pathway, ethylene biosynthetic process, cellular response to hypoxia, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, pollen-pistil interaction, pollen-pistil interaction, pollen-pistil interaction, protein autophosphorylation
Cellular Component   is active in   cytoplasm
Cellular Component   located in   mitochondrion
Molecular Function   enables   protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, MAP kinase kinase activity, protein serine/threonine kinase activity, protein binding, MAP kinase kinase activity, protein serine/threonine kinase activity, protein kinase activator activity, MAP kinase kinase activity, MAP kinase kinase activity, protein serine/threonine kinase activity, MAP kinase kinase activity, MAP kinase kinase activity, protein binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
A/G 29586440 synonymous_variant p.Leu14Leu
C/T 29586473 synonymous_variant p.Arg25Arg
C/T 29586483 missense_variant p.Pro29Ser
C/A 29586536 synonymous_variant p.Ala46Ala
T/C 29586662 synonymous_variant p.Arg88Arg
C/T 29586704 synonymous_variant p.Thr102Thr
T/C 29586710 synonymous_variant p.Cys104Cys
A/G 29586743 synonymous_variant p.Glu115Glu
A/C 29586791 synonymous_variant p.Gly131Gly
A/G 29586933 missense_variant p.Ile179Val
A/C 29587067 synonymous_variant p.Ser223Ser
C/T 29587159 missense_variant p.Thr254Met
G/A 29587192 missense_variant p.Cys265Tyr
G/T 29587194 missense_variant p.Ala266Ser
C/T 29587195 missense_variant p.Ala266Val
A/C 29587204 missense_variant p.Tyr269Ser
A/G 29587301 synonymous_variant p.Ala301Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_16876.1
MALVRHRRHPNLRLPLPEISERRPRFPLPLPPTAAKPAAGEGITAADLENLAVLGHGNGGTVYKVRHKTTSATYALKIIHSNADATMRRRAFSETSILRRATDCPHVVRFHGSFEKPSGDVAILMEYMDGGTLETALATSGTFSEGRLAAVARDILEGLACLHSRNIAHRDIKPANILINSQGEVKIADFGVSKLMCRTLEACNSYVGTCAYMSPERFDPEASGGNYNGFAADIWSLGLTLFELYVGHFPFLETGQRPDWATLICAICYGDPPSLPETASAEFRSFVESCLKKESGDRWTAAQLLTHPFVCKNPETH*


CDS Sequence:
>Vu_16876.1
ATGGCACTTGTCCGCCACCGCCGCCATCCTAATCTCCGCCTACCCCTCCCGGAGATCTCTGAGCGCCGCCCCCGCTTCCCTCTCCCCCTCCCTCCCACCGCCGCTAAACCCGCCGCCGGAGAAGGCATCACCGCCGCCGACCTCGAAAACCTCGCCGTGCTCGGCCACGGCAACGGCGGCACCGTCTACAAGGTCCGCCACAAGACAACCTCCGCCACCTACGCGCTCAAAATCATCCACAGCAACGCCGACGCCACCATGCGTCGCCGCGCGTTCTCGGAAACCTCCATCCTCCGCCGTGCCACCGACTGTCCCCACGTCGTCCGCTTCCACGGCTCCTTCGAAAAGCCCTCCGGCGACGTCGCCATCCTCATGGAGTACATGGACGGCGGAACCCTCGAGACCGCCCTCGCCACCAGCGGCACGTTCTCAGAGGGAAGGCTTGCCGCGGTGGCGCGTGATATCCTCGAGGGCCTCGCGTGCCTCCACTCTCGCAACATCGCGCACCGCGACATCAAACCTGCGAACATCCTCATAAACTCACAGGGAGAAGTTAAAATTGCAGACTTCGGAGTCAGCAAACTCATGTGCCGCACGCTCGAAGCCTGCAACTCTTATGTCGGCACGTGCGCGTACATGAGTCCGGAACGGTTCGACCCGGAAGCATCAGGCGGGAACTACAACGGTTTCGCTGCGGATATTTGGAGTTTGGGTTTGACCCTCTTTGAACTCTACGTGGGTCACTTCCCGTTTCTTGAAACGGGTCAGCGACCCGATTGGGCTACCCTAATATGTGCCATTTGTTACGGCGACCCCCCTAGCCTCCCCGAGACAGCGTCAGCTGAATTTCGCAGCTTCGTCGAATCCTGTCTCAAAAAGGAGTCCGGTGATAGGTGGACGGCAGCACAACTCTTGACCCACCCGTTCGTGTGCAAAAACCCGGAAACTCACTAA


Promoter Sequence:
>Vu_16876::LG4:29584399-29586399(+)
CTACTTAAACACATTCTTTCTCATTAAACATAGTTTAATATGAATATTTATGAGTTTTACTCTCACTCTTAAACTTTATATAAAGTATTTTAAAAGATTTTATGTGATCATTCCAATAATTATATCATAAAATATTTTTAATACCATAATTATACCATATATATATATATATATATATATATATATATATATATTCCTATCTTTTTTCTAAAAAATTCTCTCTAAATTTTTTTAATATAATCAAAATCACACAAAATAAATTATATATCTTTTTAATAAATTTGTTTAAGAGATAACCATCCTATAATATGTTTATATTATAATAACAACTTTATATATTTTTCACGAAATCTTTTAATATATTGCTAATAATTATTCACCAAATTATTTATTTTTTGGAAAAACCTTTTAAGTAAATAAATATTTAAATTAATAAACCAATATATCTCATATAAAAAATAAATCGTTATATCACTTATAATAATTTTGTAAATAACTTTCTTAATAGTTAATAATCATTTATTAATATGTAAAAATACTTTCTCGATTAAATAATCAGTAAACCTTTTTATGTTTTAAATATTCATTTCATTTATTTTTTTAATTATTATAATATTTTAAGGTAATGTTATATATATATATATATATATATATATATATATATATATATATATACATATATATATATATATATTCATATCTGATTCTTAAAAATTCTCTTCAAATTTTTTTAATATAACCAAAATCACACATAAAATAAATTATATATATATTTTTAATAAATTTGTTTAAGAAATAATCGTCCTATAATATGCTTAGATTATAATAACACCTTTATATATTTTTCACAAATTTTTTTAATATATTGCTAATAATTTTTCGCCAAATTATTTATTTTCTTTGAAAAATCTCTTAACTAAATAAATATTTAAATTAATAAATCAGTATATCTCATATAAGAAAAAATAAATCATTATATCACTTATAATAATTTATAGATAACTTTTTTAATAATTAATAATCACTTATTAATATCTAAAAATATTTTCTTGATTAAATAATCAGTACACCCTTTTATGTTTTAAATATTTATTTATTTCATTTATTTTATTTTTTAATTATTATAATATTTTAAGGTAATATTATATATATACATATATATATATATATATATATATTATATATATATATATATATATATAAATTTGTATTTATACTCTTTATAATAATAATGACATTCAAAAAGCTGTAAAACAAACAAAGATAAAATTTGTTGTATTGATTGACATTTTCTTGATTTCCGTAAGAAAATTACATCAATATTTGTCATCAACAAATTTGAGAGATATTTTACACAGTTACATAAAAAATCACTGAACATTAAGTTGATCCAATGAATTGTTTTAGTTAATTAATTAATTATAACAAGTTTATCATTTTACTTAATTAAATGTGTATAGAAATATTTCAAATATCCCAATATTCATCAAAACTATAAATGTAAATCAATCTTGATTATCTGAATTCTTTTTAAAGAATTGCAATCTTAATAATTTTCTAAGGAATCATAATCTTATATATTTTTTAAAACAAACATAATCTTAATTAATCCTTATTCGTTGGGTATCATTAAACACGGTAAATTTTATTTTTTTTATCCTTGGGAAGGTGAGATATATGAAAGGATTTTAAACTAAAGATAATATATAAAATTTTCAAATTGAAGATAAAAAGTGAAAGGCAGGCTACATTTAATCACGTGGAGAAATAAAAATATAAAAGTAAACAAAATCTGCTGAAGAAAGTGAATATCCAATGAATTTTATTCATGTACAATTATTCAGAAGAGTGGGCCCCACTCCCATATCCACCCTCTTTCCTACAAACAGTCACTGTCTCTTTCTTACTCAGTCACTTCCTATATAAAATCCTCACCATTCACACCACACTTTACTTTGTTTCTTAGAAGCATTACCTTCCTCCACCACCAACCACCGATA


Gene Sequence:
>Vu_16876(+)
ATGGCACTTGTCCGCCACCGCCGCCATCCTAATCTCCGCCTACCCCTCCCGGAGATCTCTGAGCGCCGCCCCCGCTTCCCTCTCCCCCTCCCTCCCACCGCCGCTAAACCCGCCGCCGGAGAAGGCATCACCGCCGCCGACCTCGAAAACCTCGCCGTGCTCGGCCACGGCAACGGCGGCACCGTCTACAAGGTCCGCCACAAGACAACCTCCGCCACCTACGCGCTCAAAATCATCCACAGCAACGCCGACGCCACCATGCGTCGCCGCGCGTTCTCGGAAACCTCCATCCTCCGCCGTGCCACCGACTGTCCCCACGTCGTCCGCTTCCACGGCTCCTTCGAAAAGCCCTCCGGCGACGTCGCCATCCTCATGGAGTACATGGACGGCGGAACCCTCGAGACCGCCCTCGCCACCAGCGGCACGTTCTCAGAGGGAAGGCTTGCCGCGGTGGCGCGTGATATCCTCGAGGGCCTCGCGTGCCTCCACTCTCGCAACATCGCGCACCGCGACATCAAACCTGCGAACATCCTCATAAACTCACAGGGAGAAGTTAAAATTGCAGACTTCGGAGTCAGCAAACTCATGTGCCGCACGCTCGAAGCCTGCAACTCTTATGTCGGCACGTGCGCGTACATGAGTCCGGAACGGTTCGACCCGGAAGCATCAGGCGGGAACTACAACGGTTTCGCTGCGGATATTTGGAGTTTGGGTTTGACCCTCTTTGAACTCTACGTGGGTCACTTCCCGTTTCTTGAAACGGGTCAGCGACCCGATTGGGCTACCCTAATATGTGCCATTTGTTACGGCGACCCCCCTAGCCTCCCCGAGACAGCGTCAGCTGAATTTCGCAGCTTCGTCGAATCCTGTCTCAAAAAGGAGTCCGGTGATAGGTGGACGGCAGCACAACTCTTGACCCACCCGTTCGTGTGCAAAAACCCGGAAACTCACTAA