Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17171 LG4 32697145 32700672 PREDICTED: mitogen-activated protein kinase kinase 6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to oomycetes, defense response to oomycetes, lateral root formation, defense response to oomycetes, lateral root formation, male meiosis cytokinesis, male meiosis cytokinesis, lateral root formation, male meiosis cytokinesis, male meiosis cytokinesis
Cellular Component   is active in   cytoplasm
Cellular Component   located in   phragmoplast, chloroplast
Molecular Function   enables   mitogen-activated protein kinase kinase kinase binding, mitogen-activated protein kinase binding, protein serine/threonine kinase activity, mitogen-activated protein kinase kinase kinase binding, MAP kinase kinase activity, protein binding, MAP kinase kinase activity, MAP kinase kinase activity, MAP kinase kinase activity, protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, MAP kinase kinase activity, protein binding, MAP kinase kinase activity, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04010 MAPK signaling pathway [PATH:ko04010]
SNP Position Effect Amino acid change
G/A 32697188 3_prime_UTR_variant
T/C 32697268 3_prime_UTR_variant
A/T 32697307 3_prime_UTR_variant
G/A 32697330 3_prime_UTR_variant
A/T 32697381 3_prime_UTR_variant
G/T 32697427 missense_variant p.Pro348His
G/T 32697577 downstream_gene_variant
A/T 32697714 downstream_gene_variant
G/*,T 32697751 downstream_gene_variant
G/A 32697773 downstream_gene_variant
G/T 32697810 missense_variant p.Ser308Tyr
A/T 32697848 synonymous_variant p.Pro295Pro
T/G 32698061 downstream_gene_variant
T/G 32698127 downstream_gene_variant
G/T 32698141 downstream_gene_variant
G/A 32698183 missense_variant&splice_region_variant p.Ser234Leu
A/T 32698251 synonymous_variant p.Gly211Gly
T/C 32698362 splice_region_variant&synonymous_variant p.Val174Val
A/G 32698555 synonymous_variant p.Leu142Leu
T/A 32698606 synonymous_variant p.Pro125Pro
G/C 32698698 downstream_gene_variant
G/A 32698833 downstream_gene_variant
A/T 32698945 missense_variant p.Phe95Leu
G/T 32699098 downstream_gene_variant
A/C 32699129 downstream_gene_variant
C/T 32699145 downstream_gene_variant
A/C 32699297 downstream_gene_variant
A/G 32699317 downstream_gene_variant
C/G 32699441 downstream_gene_variant
C/A 32699581 downstream_gene_variant
T/C 32699595 downstream_gene_variant
T/C 32699600 downstream_gene_variant
G/T 32699631 downstream_gene_variant
A/G 32699741 downstream_gene_variant
T/C 32699782 downstream_gene_variant
A/T 32699802 downstream_gene_variant
C/T 32699828 downstream_gene_variant
G/A,T 32699918 downstream_gene_variant
A/T 32699960 downstream_gene_variant
A/G 32700157 downstream_gene_variant
A/G 32700179 downstream_gene_variant
T/C 32700274 downstream_gene_variant
T/A 32700275 downstream_gene_variant
A/T 32700356 downstream_gene_variant
G/T 32700396 downstream_gene_variant
A/G 32700620 5_prime_UTR_variant
C/G 32700621 5_prime_UTR_premature_start_codon_gain_variant
A/G 32700663 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17171.1
MKTKTPLKQLKLAVPAQKTPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRPSDGKELEFDFTLDDLETVKVIGKGSGGVVQLVRHKWVGRLFALKVIQMNIQEDIRKQIVQELKINQASQCPHVVVCYHSFYHNGVISLVLEYMDRGSLADVIKQVKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGSTYDYSCDIWSLGMVVLECAIGRFPYIQSEDQQSWPSFYELLAAIVDSPPPSAPPDQFSPEFCSFVSSCIQKDPRDRLTSLELLSHPFIKKFEDKDLDLGILVGSLEPPVNFPR*


CDS Sequence:
>Vu_17171.1
ATGAAGACGAAGACGCCATTGAAGCAGCTAAAGCTCGCCGTTCCTGCTCAGAAAACCCCCATTACCTCTTTCCTGACTGCTAGTGGAACGTTCCATGATGGAGATCTACTGTTGAATCAGAAAGGGTTGCGTCTTATCTCTGAAGAAAAGGAATCACGGCCTTCGGATGGTAAGGAACTGGAATTTGACTTCACACTGGATGACCTTGAGACCGTCAAAGTAATTGGAAAAGGCAGTGGTGGTGTGGTACAACTTGTTCGCCATAAGTGGGTTGGAAGATTGTTTGCTTTAAAGGTTATTCAGATGAATATACAAGAGGATATTCGAAAACAGATTGTTCAGGAACTGAAAATAAATCAGGCGTCACAGTGTCCACATGTTGTAGTTTGCTATCACTCGTTCTATCACAATGGAGTTATATCACTTGTGTTAGAATACATGGATCGTGGTTCTTTAGCAGATGTAATCAAACAAGTTAAAACTATTCTGGAACCATATCTTGCCGTGGTTTGTAAGCAGGTATTGCAAGGTCTTGTTTATCTGCACAATGAACGACATGTAATACACAGAGACATTAAACCATCCAATCTGTTAGTTAATCACAAAGGGGAGGTGAAAATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCTCAATGGGTCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCTGTGACATCTGGAGTTTGGGTATGGTAGTGCTTGAATGTGCCATAGGAAGATTTCCTTATATTCAGTCCGAGGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTCTGGCAGCAATTGTGGACAGTCCCCCACCTTCTGCTCCTCCTGATCAGTTCTCCCCGGAGTTCTGTTCATTCGTGTCATCCTGCATCCAAAAGGATCCTCGTGATAGATTAACATCCTTGGAGCTTCTGAGTCACCCTTTCATAAAAAAGTTCGAAGATAAAGATCTTGATCTTGGGATTTTGGTAGGTAGCTTGGAACCTCCTGTAAATTTTCCCAGATAA


Promoter Sequence:
>Vu_17171::LG4:32700672-32702672(-)
GACAGGGATCTGGAGGAATAACCATAAAGAAAACTGGGCAAGCTTTAGTTTTTGGTATGTACGATGAACCTGTTACTCCTGGACAGTGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTTGTCGACCAGGGTCTGTAGAGATCGACATTTTTCCAAAATTATTAACTTTTTTTCTTTGGGTATATTGTAAGTTGTTATTTACGATTATGATCTGCATTGTTTCAACCCCATGCTGCTGCATGTTGGGAGTTGTTGCAGACAATAAGCATATCAGAGTGAAGCACTTCTTCCTTGTTTAAATTTTAAATTTCATTACCTTCTTTTTTTTATGTTATATATATACTTTCAGTAAGGACATATTACATTTTTATGTTTATTTTCAAACATAAAATAATCATAAAAATATAAGATTTTATATTTTTGAAAAAATAAAAGAGTAAAAATTTTAAAAAATAATATTAAATGAAGGTAAAAAATTTATAGGTTTCAAAATATATATTTTTTTATTTTTTTATTAACTTTTTTTTTAAGAATAAAAAACTAAACATAAATTTTCAGAAATCAGTTTGTGCAATCAACTTTCTTCGAAATCAATTTCTGTAAATTGGTCTATAAATTTTATGACTGATGGATTAGTGGGTCAAATCAGTTGTTACTTAAAAATTAACTATAAATAAATGAAATAATATATTTAATTCGTGAAAATAAAATTTAAATCGTTTGTTTGACTTAATCAAATATGCTCAAAATTTTAGCCTCAATTTTAGAAGCTTGACATAGTCGGTTGGAACAATCGTATTTTATTTTTTGGATTTTAATTTTAAAAAATAATTAACTTTTATAACAAATTATATATACCGATTTTTCATAGGAAGATGATTTTTTAATATCTTTACAACTTACTCTTAAGAGTAAAATAATCATTTCAAAAATTAACTTTTATATATGCAAAGAAAAAAAATTGATAAATAATGGAGAATAAGTGCAAAAAATTTTTATATCAAAATACCATTATTTTTTCAACATAGCCTAATAATATTATTTTAGGATAAAGTTTTATATTGTTTTACCAGTGCTATTTGTATTGTTGCGCAGAAGAAATAATATTTCACTTTGGTAATTTACATGATTCTTTAATTCAAATATTTACCCAAATGAAACCTTAATTTTAATTGGAAAGCTTCATAAATAAAACGTATATCTATGAAACTTATGTGTAAATTTTGTGTATTATCTTTTTTATATGGGTGTAAAAAATGTCAAGGAATCTGCAAGTAGGAAATAAGTGTTTGGTGATTAATTCAATGTACTTCTATACAATTAATATTCTCATTTTTTTAACCAAAATAATTGTATTAATAATATTGTATCAAGTTTGGGATAACTTACAAAAGATATTCATGAATTCTATCATTGGCTAAATCACACTACCCATGAAAATACTAAGAAAAAAATACTAATATATTTGGGAGGTTGAGTTCACTAATATATTTAAGTTTTAAAACTTATTTTAAAATCAAAATGAAAATTGATTGATAATGTTTTTCTAGTTGTGTATTAGAAGACATTGAAAATATTCTTTTTTTTTTGTTTAAAAATATATGTTGGATGAACTAAAAATCTATATGCAAAAATTAATATTTTAGAAAGACTAAAATAAGAAATGATCCGAACAAAAGAAAAAGTTCCCACAAACTAAAAATGATATTTTTTTTATATAAATTAAAAGTAAAATAAAACTATATTGTAAAAAACAAATTTAAGTTTGAAATTTGATAACACGTGCACATTTTTTTTTCTACATTTGAGTTTTTCCATTAAGATATGATTGAAAATTTGAAAGGAATGAGCACTTGTTGTCCTTAAACGGTATTCTGTCTACAACATGAAACTTATTCATAAACAATTCATTAAAAATAAATAAAAATATAAAATACTTATTTTATTTTCGCGGCCACTTCGTTTGAATTTATTCATACACTTTCTTCCGCACACTTC


Gene Sequence:
>Vu_17171(-)
CTTTCTGCTTTGTGTGTGTAAGAGAGAAGAGAAACTGTGAATCACTGAAGCGTGGATCCTAAAGCAGAAGAGAAGAACAACAACGATATCAGTCAGTGAACAGCGAAGATGAAGACGAAGACGCCATTGAAGCAGCTAAAGCTCGCCGTTCCTGCTCAGAAAACCCCCATTACCTCTTTCCTGTACTTTAATTTCCTTTTCTTTTTCCTTTACCAACCCATTTCGTCTTCTTTGCATATTTCTTCAATTTATGAATAAAGTTCCCGTTTTTACTCTCACTGCCTCATTTTGTTGCTTCTCTATGTTCTGGGCTTTTTGATAGTGTCTACGATGTGCTAGGGTAGACATGGGTCACAGGATTCAAAGATATATTTTCATAAATAGCTTTAGTTTTTGTAATTTTATCGTGATTTAAATACCTGTTCAATTCAGGACCAAAAAAAGTGAAGAAAGTTCACATTTTGATTTCTACTATCTTAAAAAAAAATTACTTTACTTCTGTTATGTGTTTGAAATTGAACGATTTGGTTATTGTCAAATTGGGATTAGGACTGCTAGTGGAACGTTCCATGATGGAGATCTACTGTTGAATCAGAAAGGGTTGCGTCTTATCTCTGAAGAAAAGGAATCACGGGTAGCTCTATCACTTTACATTCCTAGTGATTTATAATTTTCATCCATTATGTTCTGCAGAATTTATATTGTGCATTATTATATGTTTCAATCAATGACGGAGTTCAATTTTGATTTTGTTCCCCTCTACTTGTTTCCTCTTTCTATGCTCGTCCTGGTGATGGGGTTGATGACGCTCAACCCCAAGATTCTTATATACAATTCAAAGACCGAAGGTTTATGAATTATGAGTACTTGTTGTTGGAGAATCCTATTTGACCCAGGTGTTTTTGGTGGCATTGCTTTTGGTAATCTTGGTTCCCTTCCCGAGTCTCTAATTCTTGTTGCTTTCCACTGACAAAGACAGTGCACAAGAGTATGCTTCCACTGTAGTTGGTTTGTTGGCTAGACCGTTCATCTTGCTTCTTACAGTAGTATGGGGAACCTGTGTTATCATTGGAAATCAAAAAGTTGAAAAAGGACTCTAACTCTGGTGGCTCAAATTCATCAATGGGAGGAATAAAAGAATTGCTAACTGGTTATGGTATCACTATGGATGTAGATACTAGAAACATGGCAAAGATGATGGTTTCTCAGTTATACCACTCATCATAATGCAGATTCCAACCCAAGTTGTTCTACTTCTCTTCTGTACCACGTGAAGAAGGCTTGGTGGTTTTTTCTTTTATGGTTGCTGTTACTTTTCTCATCTCATATCATTTACCAGCTCTTTGAATCTCAGATAGAGAAAACAAGACTGTAGTGTATTAAACATGATGACTTGATATGAATAATATTTCAACGTATTAAGAAACAAATTCTTCTATTGGGCCCATACTGCACATTCTAACCTAATACTCTATCACCATTATGCATGCATCATTATGCCATTCACAGATTCATTTTTCTGTTTCTGTTTCTGTCTCTGTCTTTTTTTCTCTGTATTTTGTGATTCTAATATCCACGCTTATAATTTACCTCTTTGAACAGCCTTCGGATGGTAAGGAACTGGAATTTGACTTCACACTGGATGACCTTGAGACCGTCAAAGTAATTGGAAAAGGCAGTGGTGGTGTGGTACAACTTGTTCGCCATAAGTGGGTTGGAAGATTGTTTGCTTTAAAGGTTGTCATGGGCATGTTTTGTTAATTACCTCTTATGGGTAGATTTGCGTGTATGGATATTCTTTTCAGAATTTTTTTTGTTTATTCTTTCTTCATCTTATCCCTTGGTTTCTGTTTGACATTGAGATATTGCATCTGTTATACACTGTCTTTTAAAAGAAAGGCTATTGTTATGAAAATGATTTTCAGTATTTTCAATTGGGTTTTACCTTTTTTATGATTGGGAAATATGTTTGGACTTCTATTGCAGGTTATTCAGATGAATATACAAGAGGATATTCGAAAACAGATTGTTCAGGAACTGAAAATAAATCAGGCGTCACAGTGTCCACATGTTGTAGTTTGCTATCACTCGTTCTATCACAATGGAGTTATATCACTTGTGTTAGAATACATGGATCGTGGTTCTTTAGCAGATGTAATCAAACAAGTTAAAACTATTCTGGAACCATATCTTGCCGTGGTTTGTAAGCAGGTATGCTGGACCATATTTCCATTTCTTGTTGAAATTGAAGCTTCTAGTCCTTGCAATAGTTGATGCCAAACTTTAACCATTCACATGCATATTTCAGGTATTGCAAGGTCTTGTTTATCTGCACAATGAACGACATGTAATACACAGAGACATTAAACCATCCAATCTGTTAGTTAATCACAAAGGGGAGGTGAAAATTACTGATTTTGGTGTTAGTGCTATGCTGGCAAGCTCAATGGGTCAAAGAGATACATTTGTTGGAACTTACAATTACATGTCGGTGTGTAACTTTCCTTATTTAACCATGTTCCATATTTTACCAGAAGCTGCTTGGAAGTTGTAATCAAATTTATGAACCTTTTCCTTTTCTCCATACCTTGCATCTACAAAATGCTTAACAATGGTTTGTTTCTGTTAATTTCCTTGTTTAGCCAGAAAGAATCAGTGGGAGTACTTATGATTATAGCTGTGACATCTGGAGTTTGGGTATGGTAGTGCTTGAATGTGCCATAGGAAGATTTCCTTATATTCAGTCCGAGGATCAGCAAAGCTGGCCTAGTTTTTATGAGCTTCTGGCAGCAATTGTGGACAGTCCCCCACCTTCTGCTCCTCCTGATCAGTTCTCCCCGGAGTTCTGTTCATTCGTGTCATCCTGGTGATTTCTTAGTTCTTTTCACCTCCTTTGTTTCAACATCAAAACAGAAATATGCCACTGAAGTTTAATATGTTTGCATGTTTGTGTGCCTTTAGTTAGTATCTGTTGGTTACTCTTCTGCTGTAGATACAGTTTGACTTGTTTTGTTTGAGTTAATTCCTTGGTTTATTTACAGCATCCAAAAGGATCCTCGTGATAGATTAACATCCTTGGAGCTTCTGGTTAGTAACGTAATGCTGGTTTATTGTTTATCTTAGATTTTGTTAAAATTCCTAACAGCTGATTCATCTAATTTCATTGCACTTCCAGAGTCACCCTTTCATAAAAAAGTTCGAAGATAAAGATCTTGATCTTGGGATTTTGGTAGGTAGCTTGGAACCTCCTGTAAATTTTCCCAGATAATTCTTATAATGTAGAGTGTAAAATTTGTGCTAGACAGCCATAGCTCTTGGTTACAGGAAGAAAATTCTCATCAGCTATGCTATATGAGTATACTGGTTTCAGTCCTAGGCTTGGTGACTTCATTACAGTTTTCTGAAAGCTGCTGATATGTATAATAGTTGTTTCTTATTTGTTGTATTCAAAGGCTTGATCATTTTGTTTGATACATAATATAATCACACATTCAACTATTATGATAAATATAGGAAACTGTTTGATAT