Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17181 LG4 32774945 32776436 PREDICTED: zinc finger CCCH domain-containing protein 20
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, defense response to virus, defense response to virus, response to oxidative stress, defense response to virus
Cellular Component   located in   nucleus, plasma membrane
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/C 32775043 missense_variant p.Met25Thr
A/T 32775174 missense_variant p.Thr69Ser
C/T 32775263 synonymous_variant p.Gly98Gly
T/C 32775569 synonymous_variant p.Tyr200Tyr
A/C 32775585 synonymous_variant p.Arg206Arg
T/A 32775686 synonymous_variant p.Ala239Ala
A/G 32775737 synonymous_variant p.Arg256Arg
T/C 32775755 synonymous_variant p.Ser262Ser
T/A 32775761 synonymous_variant p.Gly264Gly
C/T 32775771 missense_variant p.Pro268Ser
G/T 32775884 missense_variant p.Glu305Asp
A/T 32775890 synonymous_variant p.Pro307Pro
G/A 32776016 synonymous_variant p.Glu349Glu
T/C 32776030 3_prime_UTR_variant
A/T 32776033 3_prime_UTR_variant
A/G 32776053 3_prime_UTR_variant
T/C 32776073 3_prime_UTR_variant
C/T 32776402 3_prime_UTR_variant
A/T 32776417 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17181.1
MMLGEHHRANPTVHVPPWPTNDDPMAEMYSSFLSNDVNAAEYSPYYIQEALTALQRYLPANETDADSDTEAQPDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGAACPEFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSGDSYDGSPMRQVLQSSAFMSSPAASLSPPESPPVSPSMNEMVASLRNLQLGKMKSMPHNRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPGRSGVNYLDIWERSVEEEPVMERVESGRGIRAKMFEKLSKENSLEGSGQGSGAPDVGWVSELVK*


CDS Sequence:
>Vu_17181.1
ATGATGCTCGGAGAGCACCATCGAGCGAATCCAACCGTCCACGTCCCACCGTGGCCAACCAACGATGATCCAATGGCTGAGATGTACTCTTCTTTTTTATCAAACGACGTCAATGCTGCCGAGTACTCTCCCTACTATATTCAAGAAGCGTTAACGGCGCTGCAGCGTTATCTTCCTGCCAACGAGACTGACGCTGACTCGGACACCGAGGCTCAACCCGACGCGCCGGTGGACGCGTACTCCTGCGACCATTTTCGCATGTACGAGTTCAAGGTCCGTAGATGCGCTCGTGGCAGGTCGCACGACTGGACCGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGCCGAGACCCTCGCAAGTACCATTATTCCGGCGCGGCATGCCCTGAGTTCCGCAAGGGGAGTTGCAAGAAAGGTGATACGTGCGAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTACACCCTGCGCGCTACCGCACGCAGCCGTGCAAGGACGGAACCAGTTGCCGCCGGCGCGTGTGCTTCTTTGCGCACACTCCGGAACAGCTGCGTCTCGTTCCGATGCAGAGTCCTCGCAGCTCGGGGGATTCGTATGACGGTTCTCCGATGAGACAGGTTCTGCAGTCTTCGGCGTTCATGTCGTCTCCGGCTGCTTCTCTTTCTCCACCGGAGTCTCCACCCGTGTCACCTTCTATGAACGAGATGGTGGCTTCTCTGCGTAATCTGCAGCTTGGTAAGATGAAATCGATGCCACATAACAGAAACGTTTCTGTCGGGTCTCCGGGTTACGGGTCACCAAGAGGTTCCGTACTTCGACCCGGGTTCTGTAGTCTACCCACAACACCAACTCAGCAACCGGGTCGGTCTGGGGTGAACTATTTGGATATTTGGGAGCGAAGTGTTGAGGAGGAGCCAGTGATGGAGAGGGTGGAGTCTGGAAGGGGCATAAGGGCAAAGATGTTTGAGAAGCTGAGCAAAGAGAACTCCCTGGAGGGATCGGGTCAGGGAAGTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTTGTGAAGTGA


Promoter Sequence:
>Vu_17181::LG4:32772945-32774945(+)
GTCTCTGTTTCTGATCTTTAGAATATCTAAAAAAGATAAAGAATGTGTTTTTGGAGAAGGGATATGAACCGTGTCCTGCACAAAGGTAGAACATCATAGGACTGCACATTCTCTACCAAAGTCTAATAATATGTTTTCATTACTTTCCAATGTTTCTGAAATGCTTTCATCATGTCCTTTTCCATCATGCCAAATCATGCTGCTTCAATTTTTTTTTTCTTCCAATTTTATACTTTAATTTACATCTGTTACCAGTATAATATTTTTTATTGTTAATATATGTAAATTACGTGTCTGACATGAGTGTCGTATAAAATAAAACACTCTGATATTTAAGTTAAGTAGATAAAAACAACATATGTCTTATTAAAATGTATTGATTAAGCTCAATTATCTGTGACTTTTCTTTCATCGATAAGGCGTTATTTTGTAATTGAGGATTTTGAAACAAGATTGCTTTGTAATGTTTGAAAAAAGTAGAGAAAATTGAATTGGGAAAATAAATTTTTGTAGATCCAATAGAGATGATGTGAGATTAAGTATGAAAATGAAATTGCTGAAGATTGGTTTGTGCAAGATATAAAATTGTAGGGTTTGATCATATGTTGTCTTTGTCATGAAAATAAATAAATAAATAAAAAGAAAAGAAAAGGGACGGTGGATAAGAAGAAGGTTGTGGCGAGAAGCTGCAATGAACAGTGACATAGTGACATGAAAGTCAAGTAATGTAATGTAATGGATTAGATAGCCATCAACTCCCACATGATTTTGACATAAGATCAAAACTTTTTATTTAATTACATCAACCACCATAACATTATTTATTTATTTATTTACCCTTAGGTAACTAAATTCATATTATTAATTAAACCATTTATATTGATTTTGTAAAATCAATGCCCAAAACTATTACTATTTAAAAGGGTTTCTTTCTGGGTATATCAGTGAAATTTATAAATAAAGATGTGAACTTTTAGGTCTTATCACAGCATTAAAAATATCTTATATAGTTATTATGATTTTGATCACGATTTATTAATAATAATTAAAAAAGTTGGGAAAGGGTGTCATCATGGGTTCTGATTTCAGCTTCATGAATCTGTTTTCCATTATCAGATTTAGGTGATTAATTGATAATAATTGTTCATCTACTCCCACTTATCCTATATACATGTTTGAGTCCTTAGGTCTCACCAGAAGAAACGTGAGAGTGTCCTCATTCGATCACACCCCTCTGTCTGACCAAACCAAACATGTCGTTTCGTAAAATCCACCACAACAGTGTTCTTGTCGTTTTTCAGCTTCGTTAAAACTACCATACCACCACCGTATCTGTATTCGTATTCCAAAAGTATAAACAAAATTTAGAAAAATTCAGAAAAATAAGAACGCAATTAAATAAAATAGAAAAAAGAGAATAAAGGAAGAGAATAAAACAACACTCTGCCCATTGGTTCAACTTCACCATAAAATCACACTGTGGGCTTTAGCAATTTTCCACTTTCATTTTCTTTTTTAAAGTGGATAAAACCGTGTTCGTTTATTGTAATTATTATTTCTTTTTATTATTTTTATTACCCTGTTGTAATATTCTACCTTTTCCTCTTTATCAAAATTTCCGCCGAGAGTTTACTGACGGATTATTTGATTAATGTAGCGTATTACACGCTCCACCGCTTTCCGGAGACCCGGGGCGTGAGACCCACAAACCCACGAAACACGACAACGCGCTTCTCATTAATCTAAATCACCTTCAATAACCGCATGCCACGTGGTCATATAATTCCACTTCACTATGCGTACATGGCAAACGAAGAAGCAGCCTGTCACGTAGATCACCCAACCACTCTGGTCATTTAGAATTCCCCCTCTACTTTAACCGCAGTGGAAAATTGCAGTTCATTGATTTTTTAACCCAACCACGGTCACCTCAACCCAACCCCGGTCAAATGCGAGTTAAGAGCCAGTTTATAACCAAGCTAACCCTGCCGGAGTTCCTG


Gene Sequence:
>Vu_17181(+)
GTAAGCAAAAGCCATCACCCAAAAAATGATGCTCGGAGAGCACCATCGAGCGAATCCAACCGTCCACGTCCCACCGTGGCCAACCAACGATGATCCAATGGCTGAGATGTACTCTTCTTTTTTATCAAACGACGTCAATGCTGCCGAGTACTCTCCCTACTATATTCAAGAAGCGTTAACGGCGCTGCAGCGTTATCTTCCTGCCAACGAGACTGACGCTGACTCGGACACCGAGGCTCAACCCGACGCGCCGGTGGACGCGTACTCCTGCGACCATTTTCGCATGTACGAGTTCAAGGTCCGTAGATGCGCTCGTGGCAGGTCGCACGACTGGACCGAGTGTCCGTACGCGCATCCCGGCGAGAAGGCTCGCCGCCGAGACCCTCGCAAGTACCATTATTCCGGCGCGGCATGCCCTGAGTTCCGCAAGGGGAGTTGCAAGAAAGGTGATACGTGCGAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTACACCCTGCGCGCTACCGCACGCAGCCGTGCAAGGACGGAACCAGTTGCCGCCGGCGCGTGTGCTTCTTTGCGCACACTCCGGAACAGCTGCGTCTCGTTCCGATGCAGAGTCCTCGCAGCTCGGGGGATTCGTATGACGGTTCTCCGATGAGACAGGTTCTGCAGTCTTCGGCGTTCATGTCGTCTCCGGCTGCTTCTCTTTCTCCACCGGAGTCTCCACCCGTGTCACCTTCTATGAACGAGATGGTGGCTTCTCTGCGTAATCTGCAGCTTGGTAAGATGAAATCGATGCCACATAACAGAAACGTTTCTGTCGGGTCTCCGGGTTACGGGTCACCAAGAGGTTCCGTACTTCGACCCGGGTTCTGTAGTCTACCCACAACACCAACTCAGCAACCGGGTCGGTCTGGGGTGAACTATTTGGATATTTGGGAGCGAAGTGTTGAGGAGGAGCCAGTGATGGAGAGGGTGGAGTCTGGAAGGGGCATAAGGGCAAAGATGTTTGAGAAGCTGAGCAAAGAGAACTCCCTGGAGGGATCGGGTCAGGGAAGTGGAGCTCCGGATGTTGGGTGGGTTTCGGAGCTTGTGAAGTGATTATAGTTGTGGCGGGTTACTGAAAAATGAAGATTTATTTTGGATAAGGCGAGCAAGTAGCTGTAAATATGTTATTTTGGTGGTATGCATGGGTGAAGTGAAGAAGAGGGTCTGTTTTTTTGGGGCAGTTTTCTTGAAAAATCAAGAATTTAAGACTTCTATATGCCATTGATTTGGAAGATGAAAGAAAGTATCCATAACCTTTTGTATAGCTAGCTTATTATTATGGTTAATTATCAATTATCATCACCATGTTTTACTTCACTAGTGTGCGTTTAATGTTACTCCTTTCACTACTAATCTCATTCATGTACAAATGTATAATATGTAGGATGATCCAACCCCAATCTGTTATGCAAATTGCTTATGTAATCTATAATATTTTATCAAATTGTTTTGCTCTCTTTC