Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17385 LG4 34988721 34993430 serine/threonine-protein kinase HT1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to hormone stimulus, protein phosphorylation, cellular response to ethylene stimulus, cellular response to hormone stimulus, response to auxin, tissue development, cellular response to ethylene stimulus, protein phosphorylation, protein phosphorylation, cellular response to hormone stimulus, protein phosphorylation, protein phosphorylation, response to auxin, protein phosphorylation, response to light stimulus, cellular response to ethylene stimulus, phloem or xylem histogenesis
Cellular Component   located in   cytosol, cytoplasm
Molecular Function   enables   protein serine/threonine/tyrosine kinase activity, ATP binding, protein kinase activity, protein kinase activity, ATP binding, protein serine/threonine/tyrosine kinase activity, protein binding, protein serine/threonine/tyrosine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
C/T 34988901 5_prime_UTR_variant
T/A 34989469 synonymous_variant p.Ile81Ile
A/G 34989827 intron_variant
T/A 34990166 downstream_gene_variant
C/A 34990172 downstream_gene_variant
C/T 34990174 downstream_gene_variant
C/G 34990175 downstream_gene_variant
T/A 34990311 downstream_gene_variant
G/C 34990498 downstream_gene_variant
C/T 34990516 splice_region_variant&intron_variant
G/A 34990730 downstream_gene_variant
T/C 34990734 downstream_gene_variant
A/T 34990735 downstream_gene_variant
G/A 34991153 splice_acceptor_variant&intron_variant
A/T,* 34991261 synonymous_variant p.Gly165Gly
G/T 34991262 missense_variant p.Gly166Cys
C/T 34991268 synonymous_variant p.Leu168Leu
T/A 34991276 synonymous_variant p.Thr170Thr
T/A 34991282 synonymous_variant p.Leu172Leu
C/A 34991292 synonymous_variant p.Arg176Arg
A/G 34991394 downstream_gene_variant
A/T 34991589 missense_variant p.Thr244Ser
G/A 34991725 downstream_gene_variant
C/T 34991982 downstream_gene_variant
T/A 34992105 downstream_gene_variant
A/T 34992559 downstream_gene_variant
C/T 34993173 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17385.1
MKKSESGGYVRADQIDLKSLDEQLQRHLSRAWTMEKNKEKEEEEVEGRSTRSRQEWEIDPSKLVIKAVIARGTFGTVHRGIYDGQDVAVKLLDWGEEGHRSDAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATMGTSELQLQTENGHIGMPSNVCCVVVEYCPGGALKTYLIKNRRRKLAFKVVVQLALDLARGLSYLHTKKIVHRDVKTENMLLDKTRTLKIADFGVARIEASNPHDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDANPDKRPEMDEVVSMLEAIDTSKGGGMIPLDQPQGCLCFRSYRGP*


CDS Sequence:
>Vu_17385.1
ATGAAGAAGAGTGAGAGTGGAGGGTATGTGAGAGCGGATCAGATAGATCTGAAGAGCTTGGATGAGCAGCTTCAGAGGCATCTTAGTAGAGCATGGACTATGGAGAAGAACAAGGAGAAGGAGGAAGAGGAGGTTGAAGGAAGGTCCACAAGAAGCAGACAAGAGTGGGAGATTGACCCCTCTAAGCTTGTCATCAAGGCTGTCATTGCCCGTGGCACTTTTGGCACAGTTCATCGTGGGATTTATGACGGACAAGATGTTGCAGTTAAGCTCCTTGACTGGGGAGAAGAGGGACATCGATCAGATGCTGAAATAGCTTCTTTGAGAGCGGCGTTTACTCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAACCAAGTTTATTGGGGCAACAATGGGAACATCAGAGCTACAGTTACAAACAGAAAACGGTCATATAGGCATGCCAAGTAATGTTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAGACTTATCTTATTAAAAACCGAAGAAGGAAGCTGGCTTTTAAAGTGGTTGTTCAACTGGCTCTTGACCTTGCAAGAGGGTTGAGCTATCTCCACACAAAGAAGATTGTCCACAGAGATGTTAAAACAGAAAATATGCTTCTGGACAAGACACGAACCTTGAAAATAGCTGATTTTGGAGTGGCTCGGATTGAGGCCTCCAATCCTCATGACATGACAGGTGAAACTGGAACCCTTGGTTACATGGCTCCTGAGGTTCTAAATGGTAATCCATACAATAGAAAGTGTGACGTGTACAGTTTTGGCATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCGGACCTTAGCTTCTCCGAAGTGACATCAGCTGTAGTACGGCAGAATCTGAGGCCGGAGATTCCAAGATGTTGCCCTAGCTCTCTGGCAAATGTGATGAAAAGATGCTGGGATGCTAATCCTGACAAGAGGCCAGAAATGGATGAAGTGGTGTCCATGTTGGAAGCTATTGACACTTCAAAGGGTGGAGGTATGATCCCTCTTGATCAGCCTCAGGGTTGTTTATGTTTTCGCAGCTATCGAGGACCTTGA


Promoter Sequence:
>Vu_17385::LG4:34986721-34988721(+)
TTTTTTTCTTATGTGGCAAACGGTGTGTCACGTTTCCAACCTGTTTAAGATATATGTATTATGTTTCAATGTCAGCCAAATATTCAGATAGCTTAGTCAGATCATAAAGTGTATAGAGAACTCAGATAGCTCAGTAGGAAGTCCAAATAGGTCGGTAAGGTGCATGAAAAACTTAGATAGCTTGGTGGAAAGTCTAAGTAGGTTGGCAAGGTGCATGGAGAACTCAAATAGTTCGGTAAGAAGTTCAAATAGGTCGTTAAGGTGTGTGAAGAACTTAGATAGCTTGGCGGGTAGTCTAAATAGTTTGGTAAATACCTTACGGAGTTATCTAGACTTGTTACACAAATTCGTTATCTGGACTTTCTACTGAACTACTAGAATTTTCCATGCATCTTATCGGACTATCTGTATATCTTACCGACCTTGAACAATTTTAATCTAATTAGAAACATAGCACTTCTTTTGCCACATAAAAAACCATCAACATTTGTCATAAAAGACTAAATTCTTGACTCTTTAAAGAACATGAACCTAAATAAAATAAAGTTTGAAAAAAAAATCAAAAACATATAATAATTTAGAGTTTAAAAACATAATTAACAATATTTTTTATTATATCATATTATTTATTATATATAATTTTTTCACTTTACTTTCTTTATTTTCTCTCCTTTGTATTTTTTTTACATTAAGATATTATATCCATATATCGTTCTACTAAATTAGATTGTGTCAAGTAAAAAGGCAAAAAGATACTTATTAGAACACCTTCTAATATGGTATTAGAGCTCGACTAGAGATAAGACCGAATTATAATATATAAATAAAGTGTAAACCCTACCTTACAAACCGATTTTGTGAGGTTGAATTAAACTTAAACCCACCTTCTAATAATAATTATTTTTCAATTATTTTCGGACTCTCATCGAACAATTAATTAAGCATATAAAATCACACAACATGAAAAATGTAAGAGAACTCATTTTGAATTTCAAACTAGTCCTAAATAATTATTTTAATAATTAAATGAACATCCTCTCTCTATCATGAACCTAATCCATTAGTTTCTCTACAATTTTGCTGTACTGTCTTATTGTTTATATTGGATATATTATATGTCGATTCGACCTGTCACAAACAATAAGGAAAAACAAAAGCAAAACTCTGTTTTGTCCCTGTATGATGGTCAGAGTGTAAATTAATGAAACCATCACCTTCACCAAATTAAAAATCATTTGATTCTATCAAGGGTTGGACTCATCTAAGTGATGCTACCTACAATGGTGGACAAATAAATCATATTTATTAAACATTAAACATGTGAATAACAATTTAATATTACAAATTAAAATTTCAATATTTTAAATATAAGGTATTGTTTTAATCTTTGTTTATCTTTTTATAAGCCTTTTTTAAATTATCTCTTGCTTTAATTATTTATTTTACCAAAAGAGTAATTACTTTTACATTAATATTTTTAAAATAGTTTTAAAATATTATATTTACATTTAAATCAAAATAAAGTTTCTTAACAAATGTATATCAGTTTCAAATATCTTCCATTCAAGAAAAAAGTGCATCCTAAAAATAAATTTTAATATTTCAAAAAATTAATCTCCAGAATTTGATTAGGATGTACTCTTATTTTTCACCAAAGCCACAATTTTATCTAGCATAGGAGTCTAAAGAGTGAGATTTTTGTTGAAAAGTTATTATATTTTGTAAGTATGTAACGAAAAGTTTAATTCCATTATCTTTGTACATGAAAGAGTATGTATTAAGAAATGTCAATAAATATGTTAGCATTGAAAGAAAAATATTCTCTAACTCTAAACATAGATATGTTACAAAAATGAATGATGATTACAAGAAGTTAGACAATTGCCTTTGTGACAAAGTGAGTCCTTTAACTGTTTGCATGATCACCCATTGATGAAGCCAAACAACTTGTCCGAAAGGGATGGGAACATGAAAAGGTGCAACAACCGTGAATGTCATCA


Gene Sequence:
>Vu_17385(+)
AATGAAAAATAAAAATAGAAGAAAATGAAAAAGGAAACAGAAAAACAAAGACACACCAAACAAGAGAGAGCCACAGAGACGCACAGAAAGAGATCTTTGGTTTCAATAAATTAGAAGAAGTTGAAGGTTTTGTTAATCGGAGGGAACCAAAGTGGGGCAGAAACACACGTCGTGTTCAGGCAAAATCCATGTGCCCACATGGATGATTGAGAGAGAGAGAGAGAGAGAGAGAGTGAGTGAGAGAGTAAGGGTGAGAGAGTGTTATATTTAGGACCTCAACATCACCACAGGTATAACAGCAGCAGCACCTGCAGTGGCAGCATAAGCATACAGTAGTAGAAGAGGAGAGACACGAGAGACCCACCAAGGAAATTTTGTTCAAGACCAGAACTTGGTCGTAAAGTTAGCATCTTTTGATGATTTTGAGTGGCTCGAGGTTCAAAGTCCATAGTGGGGTGTGGTGAATTTTATTTTGGAGTGGGGGAGGAAGAGAAGAGGTGAGAGAGATGAAGAAGAGTGAGAGTGGAGGGTATGTGAGAGCGGATCAGATAGATCTGAAGAGCTTGGATGAGCAGCTTCAGAGGCATCTTAGTAGAGCATGGACTATGGAGAAGAACAAGGAGAAGGAGGAAGAGGAGGTTGAAGGAAGGTCCACAAGAAGCAGACAAGAGTGGGAGATTGACCCCTCTAAGCTTGTCATCAAGGCTGTCATTGCCCGTGGCACTTTTGGCACAGTTCATCGTGGGATTTATGACGGACAAGATGTTGCAGGTAGTACACTCTCTTGTTTTGGTCTCAAGCTTGAAGTGTTTTGAGTTTTCATTTGATGTTTGTCTCTTTGTTTTATTATGTAACTGACCGAGTCTAGAAAGATAGAGGAAAAAAAACATTCATGATTTGTTTTTCCCTCCCTTTTGTTGCACTGTATTGTTTAACACCACGCCCATGTGCAAAGGGGAAGTTTTATTCACTTGTGGAAGTTCATGCAGTTGGTGCTTTTAAGGTGTACTTGCATAATGTGCACATGCTCCCAAACTGTAGGGTTTTTGGTTTTTCGGCCTTCTTTTGTGTGATTATCAAGGTTTCATTTGATAGACAAGTGCATTATCAACGATGTCTTGCTTAACTTTAAATGGGAGTGTTATGAAGGGTTTGAAAGAGTTGTTCAATGTTATGTATTATTTGGTCTGCAGATCCACTGCTTAAGTTTTATTTTTCATGTTCCTGCTTGTGATTTTGTTTTACTTGTACCTTTGCAATCAAGCAACAACTTTTCCTTGGACATGACTCTGTTCTGCTGTTTTTTGTTTCCTCAAGTTCTTTGAGAAGGCATCCAAGTTGATAGTGTTTGGTTAGCCATAACTGCCTAGCATTGAAACTTTGTGTATCAGGATTTGCACAATCCGTGATTCACAAGATTGAGTACCCTTTACTCCTTTTCTTTTTGTTTTCCCCGGAATTCACAAGATCCAGTTGTCGGACAGCTATGTGCATGAACTTTAGTGTTTATTTCATTTTCAACTTTCTTGTGTTCTTGGTTATTACTGTTGTGCCCCCCTTATTCTTCTAGTGGTAGCCAGTTACAGGAGCTCTTCTCGTGAGAGGTAAAATCATCAGTGATGGCAATGCCTTTTTAAGTTTTCATGATTTTCATGATAATAACAATATGCTAAACTTTATTATCTTTTACAGTTCCTGGATGCTATACTTGTTAGATGAATGAACAGTTTAACTTGTGAATGCGCATCTCCTGCTGCTTTCATAACATGCAATCAATGTTCCATTTTGTTTTTCTCAGTTAAGCTCCTTGACTGGGGAGAAGAGGGACATCGATCAGATGCTGAAATAGCTTCTTTGAGAGCGGCGTTTACTCAAGAAGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTAACCAAGGTAATATTTTCTCCTTCATTTTCACTTCGCCTTAATCATGTTTGTCCTTTATCTTGTGCCGCGGGGACGGTTAACTTCTTTTAACAGGTGGTTTAAATTCTGTTACTTGCTACTGAGTCAAATGATGATGAACAAAATGAAAGAGGGAAGATAATTGATGATGAAGATCTTGAGATTTAATGTGTTACTTGAGGCTAATATTGGACTATGTTCAATCTGGAATGTGGGAAAACATTCTTGGACTACAACATTGTCAGAATCTCAAATAAATTCTCTTAAGATTTATTTTCTGTTTTGTCTCTAATATGTTGGGGCATGGGAAAAGGATTAAGTGGTAGTTGGGTGGGTGCATTAAGATCTGCACCAAGGGGAAAAACCTGTGCAAGTGTACAGGGCAGAAATTTGGTCTGGTCTTCACGTTCCCCCATAAGTAATGCATGAAATTTTCATATAATTTCAAACATTTATGGGAGAATCTTCTTATTCAATCTTACTGTCAAATCCGTTTTGCAGTTTATTGGGGCAACAATGGGAACATCAGAGCTACAGTTACAAACAGAAAACGGTCATATAGGCATGCCAAGTAATGTTTGTTGTGTTGTTGTTGAATATTGTCCTGGAGGTGCTCTGAAGACTTATCTTATTAAAAACCGAAGAAGGAAGCTGGCTTTTAAAGTGGTTGTTCAACTGGCTCTTGACCTTGCAAGAGGGTCCAATCTTTTTGCCTTATCTGTGTCATATAAGCTCAAGAGAATAAGCTTTTTTTTCCTAAGCCTGAGAACTCTTTATTATTTACTTTACAGGTTGAGCTATCTCCACACAAAGAAGATTGTCCACAGAGATGTTAAAACAGAAAATATGCTTCTGGACAAGACACGAACCTTGAAAATAGCTGATTTTGGAGTGGCTCGGATTGAGGCCTCCAATCCTCATGACATGACAGGTGAAACTGGAACCCTTGGTTACATGGCTCCTGAGGTATATGCTCCAATTCCTTTGAAAACATCTCTCTCTTGTGCACTTTTGGGATTTGTTTCAAACACTAATTAATTTCTAGTTCTTGGCTCTGCATACACAAATTTTTGAAACTCTTGAACGTGTTAAATGTGGTCAAATCTGTTGTCTAACTAATTGTGAAAGAATTGAGATGATCATTCTGCTCTTAGAAATATAGTGAAAAATCACTAAAACGAGTTCTTGATTAAAATATTTACCTTTTTTTTTTGGAAAAATAAGACATTGTATTGTTCAATCACTGTTGTCCATACTTTTGTCAGGCATTCCTTTGTTTTATATTTCACCCATCAATTATGTATATATATATCCATGTTGGTTTTGATACATAGTACTGGAAAAAATCTCTACGTCAGAAGGTCCCATTTTCAATTAATAAGATCTTGAACTTCAGCATATCACTAATCTTTAGATATTTACAGCATCTAGCACAAACACTGTTTTACTTTTTCCTGAAAGTATTCTAATGACGACTCTCTTCAATACGAGTCATTCATTTAACTGTAATTGACAGTTCACTCTTTAAAAACACAAGCCTTGGCATATATTCTGCTTATGTTACAATTATAAATAGCTTGGTTTTGCATAAGTAATCCATGTTTTGTTGGAATAGTAACAGATGTTGTATGTATGAAAATCTTACCTGAAGAAATTGAGCAGGTTCTAAATGGTAATCCATACAATAGAAAGTGTGACGTGTACAGTTTTGGCATATGCTTATGGGAGATATACTGCTGTGACATGCCATATCCGGACCTTAGCTTCTCCGAAGTGACATCAGCTGTAGTACGGCAGGTATATGAAGTGTATTAAGTGACTCTGTCAGCAGCATAAACTAACTTTTACCTCTAACAACTGATGTTTTCAAAATCCAAAGTCTAATTCTTTCTCGTGATCTTAAATAAGGACATTTTTTTTCAAAGTCAAATATAGTATTTTTTTTACTTCCATTATACATTCCTTAATCCATGTGCTTTAACCTTAAACATCATATAGTTATGGGAAAGAGGTAGTATTTGCTAACAATCATATCTGATGTTTATGCATCCGTAGTAGCTGTTTTTATTTTAACTAGAATCTTTGTGGAACTTCAGAATCTGAGGCCGGAGATTCCAAGATGTTGCCCTAGCTCTCTGGCAAATGTGATGAAAAGATGCTGGGATGCTAATCCTGACAAGAGGCCAGAAATGGATGAAGTGGTGTCCATGTTGGAAGCTATTGACACTTCAAAGGGTGGAGGTATGATCCCTCTTGATCAGCCTCAGGGTTGTTTATGTTTTCGCAGCTATCGAGGACCTTGAAAGATTTTTCACTGTCAAGGAAATCGATTATGGAGGGATGATATACAGCATTCTGGAAAATCAGTTTGTATTTTATTTCATTGAAGGAATAGGGAAGGAAGACTCAGGATGGAATGCATACACAAAAACTGTGAAGGCCATAGTTAATGATGAGCTCTGCAATTACTTGTTACTTTGTTGGGCTATAATTTTTGTAAAGCTAATTGTGCTCTCTCCTCATTGCACCCATTTTTATAATATTTTCTATGTAAGTTGTACACTTGACAGTAGTAGCATGGATTGTTCCAACACTAATATCAAAGTCCTAAGGGGTCATTTGATGTCCTATGAGCCTACAAGTGATCTGTTTTGGGAAGATCTGCTCATGTGCAGAAAGACACCTATAATATATGGAATAAATATACAATTTGGCTGTAAAAGATGTATCTGTTTTGATTGAGGAAGCTTTTTGTTTATCCAATTGACATTTTAAGTG