Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_17515	LG4	36803038	36803478	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	lipopolysaccharide-mediated signaling pathway, protein phosphorylation, cell surface receptor signaling pathway, lipopolysaccharide-mediated signaling pathway, lipopolysaccharide-mediated signaling pathway, lipopolysaccharide-mediated signaling pathway, meristem maintenance, protein phosphorylation, pattern recognition receptor signaling pathway, lipopolysaccharide-mediated signaling pathway, protein phosphorylation
Cellular Component	located in	plasma membrane
Molecular Function	enables	protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein serine/threonine kinase activity, protein binding

SNP	Position	Effect	Amino acid change
A/G	36803110	synonymous_variant	p.Pro123Pro
T/A	36803317	synonymous_variant	p.Pro54Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_17515.1

MPIEEQNLIEWLGPRLGNKANFHYLMDPRLEGQYPTKFAHKTMKLAIHCLRLDPKTRPLMSEVLHELKSLHDDMLGSSTSHGRRHKGPSNHVSPNKYGVGICPSSNFPRCFQAMPECQDYPLPLPPSPSNPRVRSSSNPSLEIYST*

CDS Sequence:
>Vu_17515.1

ATGCCTATAGAGGAGCAAAACTTGATAGAATGGTTAGGGCCTCGTCTTGGGAACAAAGCAAACTTCCATTATTTGATGGATCCTAGACTTGAAGGCCAATATCCAACAAAATTTGCTCATAAGACAATGAAATTAGCTATTCATTGTCTTCGCCTTGACCCAAAAACAAGACCCCTTATGAGTGAAGTACTTCATGAGTTAAAATCTTTGCATGATGACATGCTTGGATCCTCAACCTCCCATGGAAGAAGGCATAAAGGTCCATCCAACCATGTTAGTCCTAACAAGTATGGTGTTGGAATATGTCCATCATCAAATTTTCCAAGGTGCTTCCAAGCCATGCCAGAATGTCAAGACTATCCTTTACCTCTACCTCCATCTCCATCAAATCCAAGAGTTAGATCTTCCTCAAATCCTAGTTTGGAAATTTATTCAACCTAG

Promoter Sequence:
>Vu_17515::LG4:36803478-36805478(-)

CACTCCTATACTAATTTGTTAAGAAGTGGACTTTAAACATAATTTAATCTTACAAAAGCCGACTTGTAAAGTGAGTTTTGGACTCACTTACATATTTTAAGTTGACCATATCTTTAGTTGATGTGAAACTTTCAAAACATTCTCCTCACACCAAGACATATATGCATCTAAGCGTGAAATTAGACATTAATGGATGATCCAATAGCAGTCCAATGATGAATTGAACAATAAATCCCACAAACAACAAACTTTGTTGGAATAAAGTCTAACTCATGGCTTTGATAGTGTGTTAAATCTAACTCAACTTTACAAAATTAACTTGTAAAGTAAGTTTTGTATTCACTAGTATACTATAAATTAATCTTATCTTTAGTTAATATATGACTTTCAACACAATTCCCTAATACTTTCCAAAGAATTTTTGCTACCTTTAGAAAAAACCATAACATCCTCCATGTACAAAACATTTGTAAGAATAGGAATAACTTTAAATAACATCATACCATCAATCCTACCATTGTGAACCACTTTTATTGAGTTTCTACTAAGTACTTTAACAAGAAAAAAGGACATAGGAGAAAGAGATCTCCCCTGCTATAAAAGTAACCCGCCAAATTACTATCACTCTAATAAACAATTTACAAAATGAAAGATAATGTAGATCCAAGAATTATTTTATCTTTATAGTATTACCTTATTTTATCCTCGTTCAATTAACAAAACAATAATAATTTCATTAATGTAACTGCACTTTTAATATAATTTCTTTTTATAAAATTTGAACTTATTTTCCATAACATTTAAGTCATTGATTATTGTATATGTTAAGAGATATATTATATATTCACAAGTTATTATTGTCATCTACTAGTAGGCGCTGTACACCTTACATGGCCTACGAGGATGAAAATTGCAATTGGAGCTGCTAATGGCATGTCATTTTTGCATGAGGAAGCTTCAAGACCATTAATATTTCGAGATTTTAAGACATCTAGTATCCTATTAGATAAGGTAACATGGCTGTTCCATGACTTACTATTCTAATTTTCAACACAGATACCCAATTACCTACATCTTAATATCATTTTATTGTATAAGGATTACAACACAAAACTTTGTGACTTTGGTCTTGCAAAAGATGCTTCAATGGGACATGAAATGCGTTCGACAACTAAAATGGTAGGATCAAAAGGCTATGAAGCCCCAGAATATATAATGACAGGTTAGTATACTTAAACATCTCAATTTCAAAGGTTGTTAAGGACTTCCAAAGAAGGGTGTTAAATTTGTTAAATATTGCATATTTAAAAAATAAGAAAGGTAAATAAAAATTTTAGATTAAATATTTCTTAAAAGAAGACGTTATTTGAAAGGATAATCATTATTGAAAACAAATCATTGTTGCTAATTTGATATTTCTTACACAGATATTATCACTAAGTCCCTTTAATTTATTCAACTACATATTTCATGTGTAGCACATAATCACAAGCTTTGGGGAAATGACCTATCTAGGATCCTGCTTAATTTTTCTTCATAGTAAACTTATCAAATCAATGTACTAAGATTGCATATTTGTCATTACTCCAACGTAAATCTAGAGTTTTTTGGTGCTTAAAACTAGGTTTTGGTTCAATAATTGTATAATTTCTCAGCTTTCTTGCTAAATGGAAAAATATATAGATGACTTTACTTCTTTAATGAAAACTCATTCAACTATTTGTTCAAAGATTAACTATACCAAAACCTCCAAATTTATTAGGATACAATAGAATTTATCATCTTCTTATCTCTCATTGTTTCACTATTGACATAAACATGGTAATAATGTGTGCATGATTTAAGATTCAATGTTGTATATAGTGCAAGTTTCTACTCGATTTGCTGTTAACATTAATAGTGTTGCTGACACAGGACTCCTTACTCCAAAGAGCAATGTTTATAGCTTTGGACTGGTTCTACTTGAACTATTGACAGGAAGAAGAGTTATAGATAAAACA

Gene Sequence:

>Vu_17515(-)