Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17542 LG4 37143344 37144348 PREDICTED: zinc-finger homeodomain protein 9
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, glucosinolate metabolic process, glucosinolate metabolic process, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein homodimerization activity, transcription cis-regulatory region binding, DNA binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/T,* 37143442 missense_variant p.Asp303Asn
G/C 37143527 synonymous_variant p.Ala274Ala
G/A 37143566 synonymous_variant p.Asn261Asn
T/G 37144238 synonymous_variant p.Ala37Ala
C/A 37144297 missense_variant p.Ala18Ser
G/C 37144298 missense_variant p.Asn17Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17542.1
MEIITPTPPPTAVTTTNAAPKSPELDIETPTRIHQAAGNPNPSPKPVSFSNGVLKRHHANNRTAAPVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPALAHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDENMVMEFCSEVGVDRGVLKVWMHNNKNTFAKKDNLNGSPANGTNHVASPNKATVRSNVNGLEQEHGGGINGNSDHDHNHNLGSSHDVNEYDNDSGTNGGGTNGSSSS*


CDS Sequence:
>Vu_17542.1
ATGGAGATAATAACACCAACGCCACCACCAACAGCCGTCACTACCACAAACGCCGCCCCCAAATCGCCGGAACTCGACATAGAGACTCCCACCCGGATCCATCAAGCCGCAGGAAACCCGAATCCCAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACAACCGCACCGCCGCCCCGGTGGTTTACAAGGAATGCTTGAAGAACCACGTCGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCCGCGGCAACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGCGACGCATCATGTTCTGGAGTACCAGCCCCACCACCGTCACCACCCTCCTCCGCCACCGCCGCACCGGAGTCCGAATTCCTCCTCTCCGCCGCCGATCTCCTCCTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCAGCGGCGGCGGCCTCTCCGTGGCCCCGGAGAACACCGCCGCGCCGGCTCTGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTCATGGAGTTTTGCAGCGAGGTTGGTGTCGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAGAACACTTTTGCCAAAAAGGACAACCTCAATGGTAGCCCTGCTAACGGGACTAACCATGTCGCCTCTCCAAACAAAGCTACCGTCAGAAGCAACGTTAACGGCCTCGAACAGGAACACGGCGGCGGAATCAACGGTAACAGCGACCACGACCACAACCACAACCTCGGTTCTTCTCATGATGTGAACGAGTACGATAATGACAGTGGAACAAATGGTGGTGGAACAAACGGGTCTTCTTCTTCTTAA


Promoter Sequence:
>Vu_17542::LG4:37144348-37146348(-)
TTTATCAATCTTCATTTTTATAATTTAATGTATAATGAGTTAATTAGTGTGTTATAAATTTAGACACCAATATACTTTCATCATATTTGAATTAGTTGCATTTTAGCATTTAAAAAAAAATTATTAGTGCTTTCTTTTTCAAAATATTAAGTTTTATTCTATATTTAGTCTCCAATTAATAATTTTATATTGGAATAATTGATAATATGTTTGTAAAAAATAAAAAAAGACTGTAACACATTTCAATAAAACTGATCCGTAATAAATTTCACTATCTTGGAGTAATTATTTATTTTCTTAATGTACGTATCAAAAATTAAATGGCAATAAATATGGAATGGGGAAAGTATATTGGTTCAGTGGTATTTTTTTTTCTTTTTATTTTTCTTTAAAATGTTTACTTTGAATGAATTTTTTCTTAGGTTCCTTTTAGTGTGAAATTTTGAGTTTCGTTTATTAACTTTTAATGATAAATATTAACTTAGATGCTAACTCTGATACTTTGTTATATTCCTGCATCAACTTGTTTTGTGCTGCACTCTCGTGGTAGTTCTTAGTGCTAAATATTAAGTTTATATTAAGTGTAAAAATTAAATATAAACTAATAAATAAATAGATTAAAAATACATAATTAACATAGTAAGAGAACTAAATTAATAAAAAGCAAATGCAAATGGTCAAGTAGAGGAAATAATATGAAAAAAAAGTCATGAAATCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACTTATAAATATAATGTAATAAGATTTTTGTTAAAGATATTATTAATCTATTATGTGGATAAGATTAAAGTCACATGTATATAATTTCTTACTAATGAATTTTTTTAAAACAATATTATAGTTATTGGTTCATACACAATGTTAATCTAAAACATTGTATAATAACAATAAATATCAACATGAAACATTACTTATTTGTAAAAAAGAATTAAAATTGTTAGATTAAAAAGATTACATTAATTTATTTTTAAAATTTGAAATCAAAATTTTTAGACATCAAATATTATATTATGAAAATAATGTTTAAACAACACTATCATACTAAGGCTAAATTTGATCTTATTCCAAAAGGCAAAATGGAGTTTAGTTTAATTATTATTAACATAAACGGCGAGGCGAAAGAGAAGTGAATTACATTAAGTAGTAGAAGTTTCGGATTGGCTTCCCTAAAACAAGCATAATAATGAGTTAACTGTGGAAAATGTCCTTTGTTGGGAAAAGCTTGAGAGATTAGAAGAAGGGCTTACAGTCAACTCAACATTCATTACTTCAATTTCCTCCCTCTTTCCACTAACCCTTCTTCTCCACACTCTAATCATTCTTTTCAACCTATAATACTTTTACAACCAATAATAATAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGCCAAATGCTAACCACATTTTTTTTTATTGTGTGATTTTTTTATATTAATAAATTTAATATATTAACATCATTTCCTTGGACTAAATAATAATAATAATAATAATAATAATAAATAATAAATAGAAGTAATAAATAGTACAGGAGGAGAAGAGAGGGTATATTTATTACTCACATCTAACCCTGAAGTAGGGTCAATAACTTAACCATAGATTAGAACCAGGGTTAAAAAAACAAGTGGTTAAGAAGGGACAACCACATTATCAACAGTCCTCACTCAAAAACATCATCAACATCTTTTTCTTTCCTCTTCTCTTCTCTTCTCTTCTTCAATTTCTTCTTCATCTTTCTTCCAACTTCAACAAGAAAAACATTCATAACCTCTTTTTCTTTCCTCTAATTTACTTCTCTCAACACTGCATAAGAATCACCAAGCCCATTTTCAAGTTTCCCCAACACTTTTCATGAAGCCCTCACAAAAAGTTAACCTTTTCATTTAATTCTTCTCATTATTTTCTTATTAAGAGG


Gene Sequence:
>Vu_17542(-)
ATGGAGATAATAACACCAACGCCACCACCAACAGCCGTCACTACCACAAACGCCGCCCCCAAATCGCCGGAACTCGACATAGAGACTCCCACCCGGATCCATCAAGCCGCAGGAAACCCGAATCCCAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACAACCGCACCGCCGCCCCGGTGGTTTACAAGGAATGCTTGAAGAACCACGTCGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCCGCGGCAACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCATGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGCGACGCATCATGTTCTGGAGTACCAGCCCCACCACCGTCACCACCCTCCTCCGCCACCGCCGCACCGGAGTCCGAATTCCTCCTCTCCGCCGCCGATCTCCTCCTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCAGCGGCGGCGGCCTCTCCGTGGCCCCGGAGAACACCGCCGCGCCGGCTCTGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTCATGGAGTTTTGCAGCGAGGTTGGTGTCGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAGAACACTTTTGCCAAAAAGGACAACCTCAATGGTAGCCCTGCTAACGGGACTAACCATGTCGCCTCTCCAAACAAAGCTACCGTCAGAAGCAACGTTAACGGCCTCGAACAGGAACACGGCGGCGGAATCAACGGTAACAGCGACCACGACCACAACCACAACCTCGGTTCTTCTCATGATGTGAACGAGTACGATAATGACAGTGGAACAAATGGTGGTGGAACAAACGGGTCTTCTTCTTCTTAA