Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_17861	LG4	41457778	41459737	PREDICTED: WUSCHEL-related homeobox 11-like isoform X2	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	adventitious root development, adventitious root development, auxin-activated signaling pathway, adventitious root development, adventitious root development, auxin-activated signaling pathway, auxin-activated signaling pathway, auxin-activated signaling pathway
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/G	41458307	intron_variant
A/C	41458393	intron_variant
G/A	41458453	intron_variant
T/C	41458732	intron_variant
G/A	41458796	intron_variant
T/C	41459144	synonymous_variant	p.Glu198Glu
T/A	41459171	synonymous_variant	p.Ser189Ser
G/A	41459183	synonymous_variant	p.Ala185Ala
G/C	41459259	missense_variant	p.Ala160Gly
A/G	41459333	synonymous_variant	p.Cys135Cys
A/T	41459339	missense_variant	p.Phe133Leu
T/C	41459390	synonymous_variant	p.Pro116Pro
T/G	41459555	synonymous_variant	p.Pro61Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_17861.1

MEDHQGQEQQQQQQKQQQQQQPNSPNQQASERTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQIQATLNQGGGASTNPFQPHHQNNPALVANLGFGCATSSFLNPSYIPPRSSSSSSSCGGAAAEESFDDFFPPSTQMGFPGIDHHASAASSSSVLYPLEASNLNYHSGFGGISGLITVFINGVPTEVPRGPMDIKTAFGEDGLQHGESYFVVSKQTQV*

CDS Sequence:
>Vu_17861.1

Promoter Sequence:
>Vu_17861::LG4:41459737-41461737(-)

TCCATTGAAAATAAAAGAAAATAAATAATAAATTTACAAGAAATGTAATAAAGCAAGAACAAAAATAGGGAAAAGAAAATGAGTGTCCTATAGAGTCTTCAACTTGATCGATTTCAAGAAATACAATTATAACATTGTAATAATTTTGTCTCAACATTCCTCAAATTTACAAAGTGGATTGTTTTTAGAGAAAGTAGCTCATTTAGAACAAAAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATACATAGACACACACACTGTGGAATACAATCCAAGTCCTCAGAGCTAACATGAAATTGATGCTGTGATTGATTTATGAACAACAAAATTTGGTTGTCTCCTTATAATTTCTGATGAAACGAATTTAAATAAATAGTGAGATTCCAACCCATTATCTTTCTTGGAAAATTATTGGCATAAACATAACTGGTTCCAACATGTGTTATCGCCATGAGAATGCCACGAGTTTGGATACCTATTTTTTCTTAATATTTAAATACTTGCAATTTCATTTCAATAATTTATTTCTTTAATTAATATTGCAAGAATAATGTTATGACGTATGCCTCTATCCGTGTCACTTTTACTAAAGTTACATAGTACACGTAACCATTCAAAATATTAAAAACAGCTGCCTTTTGTACGAATACAAGTTTTACGTGTTACCACCTTATAATTAAACACCTTATTAAAATACAAGTTTTTTTTTCTCTTTTTCTTTTTTCTTTCACATTAATGTAAATTTCAATAAAATGAAATAATTTCTAATTGTAAAAATTCGCATGTTTTTAACACCTAAATTAAGTTAAGAAAACTAAAAAACGGACGATTCAACCTTTTCAAACATGGTGACTACCATTTTTTCCTCAAAAGAAGACGACAATTATGATTAATACTTGGTCACGCATTTTCGCTTTGACTACAGTTTTGAGGAATTCTTCGTTACCTTTTTTGTACGACAATTGTGTTTTTAACCTTAAAAATATGTCTTCAAATATTGTATTAACGGCTTAGTTATTAAATAAATAAACAAAAATTATTTCGATCAGTAGTCGTGTATAATTATTAGTTAGCGAGCTTAGTTATTCTGACTTTCATTTTCATATACTAGTTATTAAAAAAGTAAACTAATATATAAATGTATTTGATATTTTTATTTAGTCCTAAGATGCAGTTGTATTATCTAATTCCTTAGATCTAAAAAACAAACCCTTTTGTGTTTCTTTCTTCTCCCTCGGGGCACGTAGAATGTAATAAGGAATGCTAATGCTTATTATCCATTAATTCTCAAAAAATTACAGGCTCAACAACCTATTAGAATCAAAATGATATTATAATTAGACACATCAGTAGTGAAACATGAGTACATATAAAAGAGATCTTAACCAAAAATCTTAAGCTAAAGTGCTCAACGTACATATTCTTTTTAATGAACTCAAAACTATAAGAGAATAAATTTATTTTGAATATATTATTTTCATAAATAAATAAAGCTTATTTTGGGTACATTACTTTAGTTTGCTAAATGATTGATGAATACCAGCATTTCACACTGAATGATTATCTTCCATTGATTTGTCTAAGAAAAAAATTATGTTAACTGCAGTAGTTATACAGAGAGGAAGTTAGAGGATTAGAGAGTTCCAAATATAGAAAAAGGAAAATGAAGGAAAAGCAGATTTATTATGAGTTTGATGATTTTGATACCGAATGGGATGAGAAGCATGTAGGCATCTAGAAAACGGTGTTGTTATAATGGTATGGGTAAAGTAAGGGGGAAAAGAATGAAGATGAAGGGCAGTGAAGTAATTTAACTGTTGAACATTCTCCACCTCTTTATATAAACCTTCCAAACTCCAAAATCACTGTTACTGTATTCCATGTACTTTATACATATCTCTTTATATTATTTTACCTAGGTTTCATCATCAGCTTCACAGACATTTTCTTTTCTTTATTTCTTGTGCATTGGA

Gene Sequence:

>Vu_17861(-)

ATGGAAGATCATCAGGGGCAAGAGCAGCAGCAGCAACAGCAAAAGCAGCAACAACAACAGCAACCCAATAGTCCAAACCAACAAGCCTCCGAGAGAACCGAACCCGTGAGGTCAAGATGGACTCCCAAGCCAGAACAAATCCTTATTCTCGAGTCCATCTTCAACAGCGGCATGGTTAACCCACCAAAAGATGAAACCGTCAGAATAAGGAAGCTGCTTGAGAAATTTGGCACCGTCGGTGATGCCAACGTCTTCTACTGGTTCCAAAACCGCCGCTCTCGCTCCCGCCGCCGCCAACGCCAGATTCAGGCCACCCTTAACCAGGGTGGCGGTGCAAGTACCAATCCATTTCAACCCCACCATCAAAACAACCCTGCTCTTGTTGCAAACTTGGGTTTTGGTTGTGCCACTTCCTCTTTCCTTAACCCATCTTATATACCACCTCGTTCTTCTTCTTCTTCTTCCTCCTGCGGTGGTGCTGCTGCTGAAGAAAGCTTCGATGATTTCTTCCCACCGTCTACTCAAATGGGTTTTCCTGGAATTGACCATCATGCCTCGGCTGCATCATCTTCATCAGTTTTGTACCCTCTTGAAGCTTCCAATTTGAACTATCACTCTGGTAATGATCATTAGCAGCTTTCAGTGCGTGTGTTGTTCATTCTCCTCCGATTGATTTCTTTCATTTTTTTTATTAGATCGGGTGAAAATGCATTAAGAGAAATTAAAAGGGTCTTTATCCAAACGTGTGATTTTTATTTTATGTTGGGTTTGTATTGTGTTTTTGAGTTGAGGATAAAAAAATAAACAAAAGTTCGTTTCTTTTTTTTTTTTCTCTTCTTTCGTTATTTTGTGCAAAGTTTTCTCGGCATAAGTCCTCAACAGAGAGGTCCTGTCACGACAAAGCCACTTTTTAAGCAAGGTTTAGGCAAAAAACAAAAAATCGAAGCTAGATTCTAAGCTTTTATTCCAGTGTTTTATTAGTTTATTGCATTTTTCGTATGTAAAAAACTCTTCTTTTTTTCCCTGATTAGGTTTTGTGGGGGGACCATTAAAGAAAGTGGTCATCTTTATCATGATTTGACAGTTCCTTCGATTGAATTGCATGAAAATTGTACGTCCCGGAAAATGATGAGGTCGCTTTCGTGTTGCAGTTTCTGTTCCTCCCTTTTTCTTTCTTCGTCCCTTTTCCCCTGGGTTTCTTTCCAAACCCTAGACATTTCAATTTGCCTTCCTCAAACTTGGTTAAATCAATGACGTTCTTCATGTTCTTTATTACACGACATACCTTTCATTAAATTTTCTGTTGCTAAAGAAACATCATGGCTAATGTATGAGTAACGTTCATTTGTTTTTTTGTCGCGCTCACTATTCCTTATGTTATTAATTAATTTCTTTAATATGTTACATTCTGCATACAGTAATTCATACAAGAGTACATTTTTTTATCTATCTATGTAGCTACTGTATCGTTGTTCACTACAGCTCTTGTTTTTCTTTCTTTCTTTCTAACTGCACAAAGTAATTATCAATTTTATGCATTTTACGAATTGGCATTACGATTTATAATTTCTTTTAGGAATTGGCACAAAGTAATATTTTGTTTTATGGCTTTTGGGATATAGGATTTGGGGGAATTTCAGGACTCATCACAGTGTTCATCAATGGGGTTCCAACAGAAGTTCCAAGGGGGCCAATGGACATCAAAACAGCTTTTGGTGAAGATGTAATGTTAGTTCATTCCTCTGGAATTTCAGTTCCCACCAATGAGTTCGGTTTCTTGATGCAGGGCTTGCAGCATGGTGAAAGCTACTTTGTGGTTAGAACTGTTATTTAACATATATCTCCAACTTGGCTATTCTTTCTCACTCACAACTTCTTTCTCTCTACAACTATAATCATATGTCTTGTGATTAAGATTGTTGAATTTTGGTTACAGGTTTCAAAGCAAACACAAGTATGA