Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19405 LG5 5885122 5888273 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   recognition of pollen, protein phosphorylation, recognition of pollen, protein phosphorylation, protein phosphorylation, protein phosphorylation, recognition of pollen, protein phosphorylation, recognition of pollen, protein phosphorylation
Cellular Component   is active in   plasma membrane
Cellular Component   located in   extracellular region, extracellular region
Molecular Function   enables   protein serine/threonine kinase activity, calmodulin binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
A/T,* 5885436 splice_region_variant&intron_variant
A/T 5885448 intron_variant
A/C 5885454 intron_variant
T/C 5886095 intron_variant
G/T 5886105 intron_variant
G/C 5886158 intron_variant
C/T 5886345 intron_variant
G/A 5886523 intron_variant
G/T 5886810 missense_variant p.Pro457Thr
C/A 5886828 stop_gained p.Glu451*
C/T 5886982 intron_variant
A/T 5887088 missense_variant p.Trp396Arg
A/T 5887194 missense_variant p.Asp360Glu
A/C 5887301 missense_variant p.Cys325Gly
A/T 5887305 missense_variant p.Ser323Arg
G/A 5887395 synonymous_variant p.Ile293Ile
G/A 5887401 synonymous_variant p.Phe291Phe
C/A 5887409 missense_variant p.Gly289Trp
A/T 5887438 missense_variant p.Ile279Lys
T/G 5887439 missense_variant p.Ile279Leu
T/C 5887444 missense_variant p.Asn277Ser
C/T 5887769 missense_variant p.Gly169Arg
C/T 5887772 missense_variant p.Val168Ile
G/A 5887819 missense_variant p.Thr152Ile
T/A 5887834 missense_variant p.Gln147Leu
T/G 5888079 synonymous_variant p.Gly65Gly
T/A 5888088 synonymous_variant p.Arg62Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19405.1
MGISSHANLFFVLLMLCSYVLDVGIATESITSSQSIKDLETLSSKDGNFTFGFFTPPNSSDRYVGIWWKPQSTVVWVANRNQSLNDSSGVVTFSEDGNLVVLNGQNHVIWSTSVSNISTNTSAQLSDGGKLELTETTTGNSLWDSFQQPSNTLLPQMKVSSNRTGRGVGLTSWKSPSDPSVGSFSVGAVERGKIVEVFIWNETRPYWRSGPWSGGIFTGVDLMASAYLNSFTVVDGEIIYNPESVSEFGIFVLNSQGRVEQKYWDDTKQELEVSWTNKISDCDVYGVCGSFAICDAHGSAICSCLKGFEPNNKEEWDAQNWTSGCFRSTSLQCERAKDQNTTIDTNEDQFLELQKVKIPDFSEWSSAEPETCRSQCLKNCSCVAYSHDDGIGCMFWNDNLLDIQQLSNRGLYLYVRVDPSELEHGKKTTIIITVTVIIGMVIIVTCACVIWRRTSGRPDFGMARIFGRTEDHANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNTSFYDDEHSLTLLGFTWAQWKEGNILSLVDSEIYDPNDHEDMLRLIHIGLLCVQELASDRPTMATVVSMLNSDVVFLPPPSQPAFIRVQNVVNSESSEESQRVCSVNTISITEVYGR*


CDS Sequence:
>Vu_19405.1
ATGGGTATCAGCAGCCATGCAAACCTGTTCTTTGTTTTGTTAATGCTGTGTTCTTATGTGTTGGACGTTGGTATTGCCACAGAAAGCATCACTTCATCACAATCCATCAAGGACTTAGAAACTCTAAGCTCCAAAGATGGTAACTTCACTTTCGGGTTCTTCACCCCTCCAAATTCCTCAGACCGATACGTTGGAATTTGGTGGAAGCCTCAATCCACAGTCGTATGGGTTGCTAACAGAAATCAATCACTGAATGATTCTTCAGGAGTTGTTACCTTTTCTGAAGATGGCAATCTTGTGGTGCTGAATGGACAGAATCATGTTATTTGGTCAACATCTGTGTCAAACATATCTACCAATACGAGTGCCCAGCTTTCAGACGGGGGGAAGCTAGAACTCACAGAAACCACAACGGGAAACAGCTTATGGGATAGTTTTCAGCAACCTTCAAATACATTACTGCCCCAAATGAAAGTTTCAAGCAATAGAACAGGTAGGGGAGTAGGACTTACATCATGGAAGAGCCCTTCTGATCCCTCTGTTGGGAGCTTCTCTGTGGGTGCTGTTGAACGCGGAAAAATCGTTGAAGTGTTTATCTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCCTGGAGTGGTGGGATCTTTACAGGGGTAGACCTGATGGCTAGTGCATATCTAAACAGTTTTACGGTTGTAGATGGTGAAATCATTTACAACCCAGAAAGTGTATCTGAATTCGGAATCTTCGTTCTGAATTCTCAAGGCAGAGTTGAACAAAAATATTGGGATGATACGAAGCAAGAACTAGAAGTTTCGTGGACGAATAAAATATCGGATTGTGATGTTTATGGTGTATGCGGGTCGTTCGCAATCTGTGATGCACATGGCTCAGCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAACAACAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGTTTTAGGAGCACATCTTTGCAGTGTGAAAGAGCCAAAGATCAAAACACAACTATAGATACAAATGAAGATCAATTTTTGGAACTGCAAAAGGTGAAAATTCCAGATTTTTCTGAATGGTCTAGTGCTGAGCCAGAGACATGCCGAAGCCAATGCTTGAAAAATTGCTCTTGTGTTGCGTATTCTCACGATGATGGGATTGGTTGTATGTTTTGGAATGACAATCTACTAGACATCCAACAACTCTCAAATCGAGGACTTTATCTGTATGTTCGTGTAGATCCTTCTGAACTTGAACATGGGAAAAAGACAACAATTATCATTACAGTAACAGTGATAATAGGAATGGTGATCATTGTCACTTGTGCATGTGTAATATGGAGGAGGACTTCCGGTCGCCCAGACTTTGGTATGGCTAGAATCTTTGGAAGAACTGAAGATCATGCTAATACTAACAGGATTGTTGGAACATACGGTTACATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACACAAGCTTTTATGATGATGAGCATTCTCTTACCCTTCTAGGATTTACCTGGGCACAGTGGAAAGAAGGCAATATATTATCTTTAGTAGATTCAGAAATATATGATCCTAATGATCATGAAGATATGTTAAGGCTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCAGACAGACCCACAATGGCTACAGTAGTTTCTATGCTTAATAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGGTGCAAAACGTGGTTAATTCAGAGTCGTCTGAAGAAAGTCAAAGAGTTTGTTCCGTGAATACAATTAGTATTACAGAAGTCTATGGTAGGTAG


Promoter Sequence:
>Vu_19405::LG5:5888273-5890273(-)
CTCTCATATATGGAATTTGTGTTTTAACGTCTTATATTAAGATATATGATTTCTTTCATCTTTAGTTAGGGTTTTTCCTCTTTACTTATTGCTTGCTTTCTTTAACTCATTCATTGCCATGATTATTGATTTTGTCGATACGGGAACGTACGGGGAAATCTAGATCCGGGAAATTTCTCCCAATAGCATATTGGTTGCCTTTAAGCTCCTGCACTTTAGAACTAATTACTAGGAATGCTAGGAATTGTATGAACTCATAATTAAGGATAGGCCTTCTTGCAAGGTGATTTAGAGAGTGGCATTAGCATTGATGATAAGAATGATGAATTCCTAAAAGTATATGAGAGTGGATAAGATGAAATTGGTAACCCCAACAACATACTCATCCATTTAATTCATTGAAGTGTTTGTATTCTGTTTTTCTCCATTGATCAAATTCATGCATACATATTTAATTATTGTCTCTTGTATTAAAACCTACAATCAATTTGCTCTTAAGTCTTAAATAATCAACAAATCATATAGCTAAACTAGGCCGTGAGTCCTTTGGGAGAACGATACTTGGTCTTACCGAGTTTATTACTTGATACGATTCGGTCACACTTGCCAATTGTTAAACAAGTTTGTGGCGTCGTTTTTCGGTATTCATAAATTTGACATCACTCAACCACTTCGAAGTCATCAATTTGACATTGAAATCTCTACTACGATTGTGATCATCAATCACTTTTCGTAGCTATCATGACTTGGCACCACACTTATAGGCACAATAAGCATACCATTTGCAATTCCCATTTCCCCCCAAACATTTTACAGAAACCATTTTCTTGTCATTCTTAATGAATTTTAAATTTCTATCGTTACTCAGTGCAGAAGTCTTAATGGCCTCTGTGAATTCCTTTTTGTTAGTGAAGTAGGTTCCTACTTCCCATTAGGCATACTAAATGTGGAAAACAAAGTTTTCGGAATGGAATCATCATCCTCCTCACTATCTGGACCACTATCTAACTCATCTGACACCCACTCAATGTCAGACAAGCCATGAACATCATGCATGGAATCATTATCAGTTGTTCGTGAACACTTACCTACTAGAGTGCAAGCTTCTTCTTCTCTCACATTTCCTTTACAAGTCCCAATGTCATCTACATCTTCATCCTCATGTACATCTTCATCCTCATCTCCTCTACATTTTCATCCTTACCATCATCTACATCCTCAATAGATTACTCACATACAACAACCATTTAAAATATTAATAATTGAGAGGAAATTTGTGAGCAACCTTTAATTTTAAACACTAATTGAGTTCAAAATTTGTTTATTGAAAGATTGATATTAGTTCCATTAACTTTCCTAGAAATAAGCTAGAAATTCGCATTTGCTTTGAGATTGTTAAGATTTCAAAGTTGTGGTATATACTACAAATGGAGCCAATTTAGATTTAATCTAGTTTTTTAAACGTGAGTTAAATTAAACTGTTTCACCTAATTGTCAGTTTTACGAGTTCAAATTGAACTGAAAGTGACACCAATCTTTTCTTATATTTTCACTACTGATATAATTTTTTATTATAATTATTTATTGTTTATAAATTAACATTTTAATTTTAACTATTGTATTTATATTAATATTTAGTGAAACAGATCAACCCTTTTTATTATATTACTATGAAATAAATAGTCGAGTGGAAATATATCTTTTATTGTACTATAATACATATATAATATAAATTGAGAAAACAGAACCTTCTTGTTGAAATAAACACATTTATCTCAATAACTCTTCTTGGTAAGTCGTTTACAAATTTTTTACTTTAAACTAATTAATTTTTAAGTCAACCAATAAATCGCGTTGGCCCACCTTGACATGTCCGGAGGTGGAGACAGTTCAGTTTAAGATGGAAGAGTCAAAAAAGGAGGAGTAGCCGTTGACTTCAAAAAAGGAGGAGTTGCCATTGACTTCATATTAGGAGTAGATCTTATTCTATGATCGGAATA


Gene Sequence:
>Vu_19405(-)
ATGGGTATCAGCAGCCATGCAAACCTGTTCTTTGTTTTGTTAATGCTGTGTTCTTATGTGTTGGACGTTGGTATTGCCACAGAAAGCATCACTTCATCACAATCCATCAAGGACTTAGAAACTCTAAGCTCCAAAGATGGTAACTTCACTTTCGGGTTCTTCACCCCTCCAAATTCCTCAGACCGATACGTTGGAATTTGGTGGAAGCCTCAATCCACAGTCGTATGGGTTGCTAACAGAAATCAATCACTGAATGATTCTTCAGGAGTTGTTACCTTTTCTGAAGATGGCAATCTTGTGGTGCTGAATGGACAGAATCATGTTATTTGGTCAACATCTGTGTCAAACATATCTACCAATACGAGTGCCCAGCTTTCAGACGGGGGGAAGCTAGAACTCACAGAAACCACAACGGGAAACAGCTTATGGGATAGTTTTCAGCAACCTTCAAATACATTACTGCCCCAAATGAAAGTTTCAAGCAATAGAACAGGTAGGGGAGTAGGACTTACATCATGGAAGAGCCCTTCTGATCCCTCTGTTGGGAGCTTCTCTGTGGGTGCTGTTGAACGCGGAAAAATCGTTGAAGTGTTTATCTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCCTGGAGTGGTGGGATCTTTACAGGGGTAGACCTGATGGCTAGTGCATATCTAAACAGTTTTACGGTTGTAGATGGTGAAATCATTTACAACCCAGAAAGTGTATCTGAATTCGGAATCTTCGTTCTGAATTCTCAAGGCAGAGTTGAACAAAAATATTGGGATGATACGAAGCAAGAACTAGAAGTTTCGTGGACGAATAAAATATCGGATTGTGATGTTTATGGTGTATGCGGGTCGTTCGCAATCTGTGATGCACATGGCTCAGCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAACAACAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGTTTTAGGAGCACATCTTTGCAGTGTGAAAGAGCCAAAGATCAAAACACAACTATAGATACAAATGAAGATCAATTTTTGGAACTGCAAAAGGTGAAAATTCCAGATTTTTCTGAATGGTCTAGTGCTGAGCCAGAGACATGCCGAAGCCAATGCTTGAAAAATTGCTCTTGTGTTGCGTATTCTCACGATGATGGGATTGGTTGTATGTTTTGGAATGACAATCTACTAGACATCCAACAACTCTCAAATCGAGGACTTTATCTGTATGTTCGTGTAGATCCTTCTGAACTTGAACATGGTATGTTACGTCTGCTCAGGCATTTTAAACATAGCTTCTTTTGTACGGAATTCCCTATATTTTAGATTTAATATTTTTCCTTAACATATGAAGGGAAAAAGACAACAATTATCATTACAGTAACAGTGATAATAGGAATGGTGATCATTGTCACTTGTGCATGTGTAATATGGAGGAGGACTTCCGGTCGCCCAGGTAAGACACCATCTTCAGAATTTGGCCTATAATTTAGTTTTGTTTCTACTGGTAAAGGAGCTGACCTTACATTTTCTTTATCACTCTGGCTAAAATATGTTGCTAAATCAAATCAGCAATGAAAAGGGACAAGAAAGGTTTCTTATATTTCAAGAATGATGAACCATTAGAACAAACAGGCAACAAAGTATTTGAAGAACTGTCACGAGTTAAACTACAGGAGCTGCTCCTGTTTGATTTCGAAAAGCTTGCAACAGCCACAGACAATTTCCACCAGTCCAACAAACTTGGCCAGGGTGGTTTTGGTCCTGTGTACATGGTACCTTGAAACAAAGTTATCATATTTGAATCCATATTAAGTGTTTATAGTTGTCCTCAGAATTTTTTTTTATATTTTTTTTCAGGGGAAACTGCAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGGCAAGGTCTAGAAGAATTCATGAACGAAGTAGTCGTGATTTCCAAGCTTCAGCACCGTAATCTTGTAAGACTTCTTGGATGCTGTATTGAAGGTGACGAAAAGATGCTACTATATGAATATATGCCAAACAAAAGTCTAGATGTGCTTATTTTTGGTTAGTTCTATGATTCCTTCTCTAGTACTTGTCTATATATCCAATATCCAATTCTGTACTTCTATGATTCTCTTTATTTAGTACACAAATATTCAAGATGTAAACAATCATTTCATAACCAGTTAGTTTTCTCAAAAGCATGCAAATCAGTGGTTTAGATGACCCTGCTTCGTTGTTCATCTTTTAATGTTATGTTCACAAGAATACAATGCTGCCATTACTTTTTAGATCCAACAAAACATAAACTCCTAGATTGGAGGAAGCGCTGCTGCATAATAGAAGGAATAGCTCGAGGGTTGCTTTATCTTCACAGAGACTCTAGACTAAAAATTATACACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGACGAACTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAAGAACTGAAGATCATGCTAATACTAACAGGATTGTTGGAACATAGTAAGTATATTTTCTTTATCCATTATCTGAAGAAAATTATTGGAGAATCACGGTTGACATTTGAATGCAGCGGTTACATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACACAAGCTTTTATGATGATGAGCATTCTCTTACCCTTCTAGGATTTGTAAGTCACAACAATTTCTAACTCAATTATAGGAATCTTTGCTGAAAGCTAATTGTTTTTGTTTTCATTTCAGACCTGGGCACAGTGGAAAGAAGGCAATATATTATCTTTAGTAGATTCAGAAATATATGATCCTAATGATCATGAAGATATGTTAAGGCTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCAGACAGACCCACAATGGCTACAGTAGTTTCTATGCTTAATAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGGTGCAAAACGTGGTTAATTCAGAGTCGTCTGAAGAAAGTCAAAGAGTTTGTTCCGTGAATACAATTAGTATTACAGAAGTCTATGGTAGGTAG