Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19523 LG5 8235297 8236332 PREDICTED: WUSCHEL-related homeobox 3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   stipule development, adaxial/abaxial axis specification, plant organ development, regulation of transcription, DNA-templated, centrolateral axis specification, regulation of transcription, DNA-templated, plant organ development, regulation of transcription, DNA-templated, regulation of epidermal cell division, stipule development, regulation of transcription, DNA-templated, flower development
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/G 8235456 synonymous_variant p.Asp150Asp
A/G 8235489 synonymous_variant p.His139His
C/A 8235638 downstream_gene_variant
C/T 8235643 downstream_gene_variant
T/A 8235667 downstream_gene_variant
A/G 8235676 downstream_gene_variant
C/A 8235681 downstream_gene_variant
G/A 8235683 downstream_gene_variant
C/A 8235686 downstream_gene_variant
T/A 8235714 downstream_gene_variant
A/G 8235730 downstream_gene_variant
A/G 8235731 downstream_gene_variant
T/G 8235732 downstream_gene_variant
A/T 8235764 downstream_gene_variant
G/T 8236026 missense_variant p.Pro103Thr
G/C 8236028 missense_variant p.Ser102Cys
A/T 8236036 missense_variant p.Phe99Leu
A/G 8236198 synonymous_variant p.Tyr45Tyr
G/T 8236216 synonymous_variant p.Thr39Thr
G/A 8236224 stop_gained p.Gln37*
G/A 8236233 stop_gained p.Gln34*
G/T 8236238 missense_variant p.Ala32Asp
G/A 8236244 missense_variant p.Pro30Leu
C/T 8236250 missense_variant p.Arg28Lys
C/T 8236262 missense_variant p.Arg24Lys
G/A 8236264 synonymous_variant p.Tyr23Tyr
C/T 8236273 synonymous_variant p.Glu20Glu
C/T,A 8236293 stop_gained p.Glu14*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19523.1
MSPAGSSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQKLRRKLTKQLQLQQQQLQLHHCQLTPDITNHFFAYSPSSSTQDFPFYNPPTFLFQGGSSNTSEQALNCAWNVHNLQSNLVAREDVTFYNNGGSTPVDVNNQPSSCCTSRPLKTLDLFPLTTTRTDEDCTAPPPKEL*


CDS Sequence:
>Vu_19523.1
ATGTCTCCAGCAGGTTCTTCAAGATGGAGCCCTACCACAGAACAACTCATGATCTTAGAGGAGCTCTACAGGAGTGGCATTAGAACTCCTAGTGCCTCACAAATTCAGCAAATAACCACACACCTTTCTTTCTATGGCAGGATAGAAGGAAAGAATGTGTTCTACTGGTTTCAGAACCACAAGGCTAGGGATAGACAGAAGCTCAGAAGGAAACTCACCAAGCAACTGCAGCTACAGCAACAACAACTCCAACTCCATCATTGCCAACTCACACCAGATATCACTAACCACTTTTTTGCTTATTCCCCTTCTTCTTCAACCCAGGATTTTCCCTTTTATAACCCACCTACCTTTCTTTTTCAGGGAGGATCTTCAAACACATCTGAACAGGCATTGAATTGCGCATGGAATGTGCATAACCTGCAAAGTAATCTGGTGGCGAGGGAAGATGTGACCTTCTACAACAATGGTGGGAGTACACCTGTGGATGTTAACAATCAACCATCTTCATGTTGCACTTCTCGACCCCTCAAGACCCTTGATCTCTTTCCACTCACAACCACCAGAACTGATGAAGACTGCACCGCTCCACCACCCAAGGAGCTCTAA


Promoter Sequence:
>Vu_19523::LG5:8236332-8238332(-)
AGAAGAAGAAGATGACGATGACGATGATGATGTTGTATGAGTTTTGTGGTTGACTTGTGTGATGCGGAGAGAGAATGGTGACGAGAGGGAATGGAAAATGGACGGTGGAGATGGAGAGGAATGTTGACAGAGATGACAAGTCACCTTCTGAGACCAAAATGGGACAAGGCATTGGACACTCTGAAACATGCATTTATGGAGTCATAACTGTTGCATGCTTGCGTTTTCAAAATGTCAGCACTAAGGACGAAGCATGCATATGCACACAATGGGAGACCCCACTTCAGTGACTTGCCATTTTGCCAAGTCTCACCTTTGGTACCCCTGTCTCTAACACTGTCTTCATATCATAAATATATATACTTATATATTTCCTTATCACACATTTCAAACCTCATTAATATCACTGTTACATTATTCTACCTTAATCACAAAACACAACCCTTCTTAATATTGTTCGAAATAAGGCAAAGTTTTATATCACTAGAAATGATTGAAATGAGTTTAAGTTTCACATTAGATATAAATGAAAAAATAAAATATTATATAAAGGTAAAAGACCTATTAATCTATTATTTTAAGATTTTGGATAGAGAATAATGTTAATATCTTATACGATTAGATTCATATCTCATTAATGTTTTTGTTTCTTCGATAAACCTCTTCCGGGATAAAACTAATCATAAAGTTAAATCATATATAAAAGAAAAGATCTCTCTAAACCCAACAAAAATCATAAAATTAAATAATATATAAAAGAAAGGATCTATGAACCAATTTTTTAAAATTTTAAACTAAAAGTGATACGAGAATTAAACTTGGTATCATAATCTCTTCCTTACTACATCCTTTCAAAAAAATAAATAAACCAGTTTAATATTAGTAATAAAATTGGTTCGAAATAATCTAAATATAAATTTAAATGCCACACGTTGAATAAAAATGTCAAATATATACACGGTATAAAAGAAATCCATAAACTTGATGTATTGAGATTGTGAATTAAAAATGATATAAATTCATCTCTCAAAAAACCATCAAAGTTATTTGTCTCTTCTGGCTAACTTTGGACAGGTGGCATCAACCATACAAACCAAACAGGAGGCTTTTTCTTTTTGGGTTTTAGTCTAGATATCAAACATAGCTATTTGGGCCATCAAATTGCAAAATGCTTGAGCCATGTTAAGAGATGTGTTTCTGAACAAAACATTGAAGTTTATTAAGATATTGAATTACAAGTGAGAGTTGAAACATGTGTGATTTATGGAAAAGTAGTATATTTTGTGGTCTTAATGAACGATGGATGTAATTATTGTATGTATTAGTTTAAGATTAGTTGGTTGTTGGTGCAAAAGAAAGTATTTATTGCAAGAATGTAGAGGTGAATAAATTAGTATTTTCACAGAATCCTAGAATAGATGGAAATAAACATGTGATGGGAGATGAGAGAGATAAAGGGTAACAATGTGTGTGTTATTTTTTGGTTTTTCCAAAGACAGTTAAATTTGTTTTGGCACAGTAATAACAGGCTAGAGCAACAGTGTTAAAGGAGGGACAAATGTGATTTGGAAGGAGAATTAGGGGTGGTTAATTAGAAGGAGATAGAAGGGGCAATTTGTCCAAGATAAGAGTGTTCCTATATAGTACTGAATTAGCCTTACTTGGGAAGAATCTGGTTGATTCTGTTAAAAAATGTTAATAATAAGGTCATGATGAGTCACACAGCCAGAATGAGTAGTTCTCTTTTCATTCACTCATCTCTTTTCACACACTCTCTCTCTCTGCATGGTTTGAAGCCTCACTTGAATGCTCCTCTAAAAGGAACATGAGCATGAGACTATAGTACTTTTTACCCATCTAATTCACCACTCCCTTTTATACCTGTTCAACCTCTTTCCTTTTTGTCTCTTTCTCTCCTCTTTACTGTATCTTTCTCTCTGTCCCTCTATTTATACATCCCTCTCCTGTCTCAAGAAACTCATCAAAGAGAGAAAGAAAAG


Gene Sequence:
>Vu_19523(-)
ATGTCTCCAGCAGGTTCTTCAAGATGGAGCCCTACCACAGAACAACTCATGATCTTAGAGGAGCTCTACAGGAGTGGCATTAGAACTCCTAGTGCCTCACAAATTCAGCAAATAACCACACACCTTTCTTTCTATGGCAGGATAGAAGGAAAGAATGTGTTCTACTGGTTTCAGAACCACAAGGCTAGGGATAGACAGAAGCTCAGAAGGAAACTCACCAAGCAACTGCAGCTACAGCAACAACAACTCCAACTCCATCATTGCCAACTCACACCAGATATCACTAACCACTTTTTTGCTTATTCCCCTTCTTCTTCAACCCAGGATTTTCCCTTTTATAACCCACCTACCTTTCTTTTTCAGGTAATCTTCTTTTTCCCACCGTGCATGTACACACCCTCTCACTGATCTATATTTATCTTCGTTTCTTTCATATTTTTCTCTGATAACTCTCCGATGCCTCATGCATGGGAGTTCCTGGCTTACCATCTCCTACAATAAATTAATGTTTTTGATGTACTCGAGGTATTTCTGACCGATCGCTACAGAAACCAATTCATTCAACTTCTGATGTTTATTTAAGGAACCTATGTGTCTGCAATTAAAATCAGTGATGTAAATGCACAAAATGACACACATGCATTAGGATCGGTTTTTTGGGGAAGAAGTTTCGGATTCATCTCCAAAAGGACATGATCTAAGTTTGAGTTATAATTGAAGTCAGGGAAAATATTAATTAAACCATATTTGTTAACTTTTTTTTTTTTTTTCTCATTTGATATATGTTCAGGGAGGATCTTCAAACACATCTGAACAGGCATTGAATTGCGCATGGAATGTGCATAACCTGCAAAGTAATCTGGTGGCGAGGGAAGATGTGACCTTCTACAACAATGGTGGGAGTACACCTGTGGATGTTAACAATCAACCATCTTCATGTTGCACTTCTCGACCCCTCAAGACCCTTGATCTCTTTCCACTCACAACCACCAGAACTGATGAAGACTGCACCGCTCCACCACCCAAGGAGCTCTAA