Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19539 LG5 8612236 8615262 PREDICTED: transcription factor AS1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   leaf formation, defense response to bacterium, negative regulation of transcription, DNA-templated, leaf morphogenesis, regulation of innate immune response, polarity specification of adaxial/abaxial axis, response to virus, negative regulation of transcription, DNA-templated, defense response to bacterium, regulation of innate immune response, polarity specification of adaxial/abaxial axis, response to virus, leaf formation, defense response to fungus, negative regulation of transcription, DNA-templated, defense response to fungus, asymmetric cell division, regulation of innate immune response, negative regulation of transcription, DNA-templated, defense response to fungus, leaf morphogenesis, defense response to bacterium
Cellular Component   located in   nucleolus, nucleus, nucleus, condensed chromosome
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, DNA binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, identical protein binding, protein homodimerization activity, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 8612237 splice_region_variant
T/A 8612636 missense_variant p.Glu307Asp
T/A 8612876 synonymous_variant p.Gly227Gly
A/T 8613135 missense_variant p.Leu141His
T/A 8613218 missense_variant p.Arg113Ser
T/A 8613331 missense_variant p.Asn76Tyr
T/A 8613473 synonymous_variant p.Pro28Pro
A/T 8613685 intron_variant
C/T 8613686 intron_variant
T/C 8614030 intron_variant
T/C 8614076 intron_variant
A/T 8614082 intron_variant
A/T 8614333 intron_variant
A/T 8614360 intron_variant
G/A 8614456 intron_variant
G/T 8614509 intron_variant
A/C 8614937 intron_variant
C/T 8615045 5_prime_UTR_premature_start_codon_gain_variant
C/A 8615107 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19539.2
MLLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNNCTIDPINDSNYEHILESFAEKLVKERPSPSFVMATSNSSFLHTDQPAPAQALLPSWLSNSNGTAPVRPPSPSVTLSLSPSAAPPPWMQPVRGPDNGGPLVLGNVGPHGGVLAFGENMVMSELVECCKELEEVHHALAAQKKEAAWRLSRVELQLESEKAGRRREKMEEVEAKIKALREEQTTALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHMRLTKFLEQVGCRSRLSEPNGR*

>Vu_19539.1
MLLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNNCTIDPINDSNYEHILESFAEKLVKERPSPSFVMATSNSSFLHTDQPAPAQALLPSWLSNSNGTAPVRPPSPSVTLSLSPSAAPPPWMQPVRGPDNGGPLVLGNVGPHGGVLAFGENMVMSELVECCKELEEVHHALAAQKKEAAWRLSRVELQLESEKAGRRREKMEEVEAKIKALREEQTTALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHMRLTKFLEQVGCRSRLSEPNGR*


CDS Sequence:
>Vu_19539.2
ATGCTCTTGGAAATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCATTACTACGCGCATACGTCAAGCAGTATGGTCCAAGAGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATGCAAAGTCATGCTTAGAGAGGTGGAAGAACTACCTGAAGCCTGGCATTAAGAAAGGATCTCTTACAGAGGAAGAGCAGCGTCTTGTCATCAACCTTCAAGCAACACACGGAAACAAGTGGAAGAAAATAGCAGCACAAGTTCCAGGTCGCACTGCCAAGAGGTTAGGAAAGTGGTGGGAAGTGTTCAAAGAAAAGCAGCAAAGAGAAACAAAGGGGAATAACTGCACCATTGACCCGATTAACGATAGCAACTACGAGCATATACTCGAGAGTTTTGCTGAGAAACTTGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCATTTCTGCACACCGATCAACCTGCGCCTGCACAGGCCTTGCTTCCATCTTGGCTTTCAAACTCCAATGGCACAGCACCTGTGAGGCCACCCTCACCTTCTGTGACTCTCAGTCTGTCTCCCTCGGCGGCGCCACCTCCGTGGATGCAACCGGTGAGAGGACCAGACAATGGTGGTCCTCTTGTTTTGGGGAATGTGGGTCCTCATGGAGGTGTTCTAGCATTTGGTGAAAACATGGTGATGTCTGAGCTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCTCAGAAGAAGGAGGCGGCGTGGCGGTTGAGCAGGGTGGAGCTGCAGCTGGAGTCGGAGAAGGCAGGGCGGAGAAGGGAGAAGATGGAGGAAGTTGAAGCAAAGATCAAAGCTTTGAGGGAGGAACAAACAACTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTAGCAGGATTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACATGCGTCTCACCAAATTTCTAGAACAGGTAGGATGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAG

>Vu_19539.1
ATGCTCTTGGAAATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCATTACTACGCGCATACGTCAAGCAGTATGGTCCAAGAGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATGCAAAGTCATGCTTAGAGAGGTGGAAGAACTACCTGAAGCCTGGCATTAAGAAAGGATCTCTTACAGAGGAAGAGCAGCGTCTTGTCATCAACCTTCAAGCAACACACGGAAACAAGTGGAAGAAAATAGCAGCACAAGTTCCAGGTCGCACTGCCAAGAGGTTAGGAAAGTGGTGGGAAGTGTTCAAAGAAAAGCAGCAAAGAGAAACAAAGGGGAATAACTGCACCATTGACCCGATTAACGATAGCAACTACGAGCATATACTCGAGAGTTTTGCTGAGAAACTTGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCATTTCTGCACACCGATCAACCTGCGCCTGCACAGGCCTTGCTTCCATCTTGGCTTTCAAACTCCAATGGCACAGCACCTGTGAGGCCACCCTCACCTTCTGTGACTCTCAGTCTGTCTCCCTCGGCGGCGCCACCTCCGTGGATGCAACCGGTGAGAGGACCAGACAATGGTGGTCCTCTTGTTTTGGGGAATGTGGGTCCTCATGGAGGTGTTCTAGCATTTGGTGAAAACATGGTGATGTCTGAGCTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCTCAGAAGAAGGAGGCGGCGTGGCGGTTGAGCAGGGTGGAGCTGCAGCTGGAGTCGGAGAAGGCAGGGCGGAGAAGGGAGAAGATGGAGGAAGTTGAAGCAAAGATCAAAGCTTTGAGGGAGGAACAAACAACTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTAGCAGGATTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACATGCGTCTCACCAAATTTCTAGAACAGGTAGGATGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAG


Promoter Sequence:
>Vu_19539::LG5:8615262-8617262(-)
AGCTGAGCAAGACCCGCATGCAACATATACAAGAAAATACCAAAGAAAAAGAGTTAAAACTCAATTTACTCAAACAAATAAACTGGTTGATCAAAATTGAAGAATTTGTAGTTATGATCAATCTTACGGTCTCAATTATTCAATCAGACAAACAAAGGATGAGAACTCCTAGTGAAAAGTTAAGAGATTCTAGAAAAATGATTTATAAAGAAATAATATATTTTAAAATAATAAAACTTGTTTATAATGAAACTATTTATATTAAAATCATTTAATATTAAAATAATTGAATCTCATTATTTTTAAATTATTATCATACCTAAAGTACAAATTTCTAAAAAAAACTAAAAAATAAACAAAAATCTTAAAAAATAGCAAATATTTGATCTATTTTGCATAAAAAGATATACCTCTAAGATTTTACTTAGAGTGTTCACATCAATAAATTCTTAATTCTAAATTTTAAATCTTAAATTATAAATCCAATATATCATATTCGATCTATAAATTTAAAAGAATGAGTTTATAATTCTTTAAGTTCTTAATCACAACTAACAAATCCTTCAATTGAATTAAAATCAACATTAATACATCTTTGAATGTCCATGTTAAATATCATAATTATTTTTTCTCATTATTCATACTATTATTGCTTTAAACTGATTTAATTAATATAATAAAATAAATTTAATTCCTGTTGAAATGTGTTATAATCAATCCAATAAATAAACCCTAGTAAATGGCTAGACAAATGAGAAGAGTATCTCACAACACAATCAATATTTGATCACATTAATAAAATAAGTACTACAAACATAAAGATGTACCTTAGTTTGTTATTCTCATTGTGATCCTAAAGTTGGATTCTTCCTTATTTATTTCATTCCTATTTGGTCAAGTTGTCATCTATGTTCTCCACCCTTTGCATGGTCTATCATGGACATGTTTTGAAAAAGAATTAAGAATTTAATTAAAAAATCTTTAAAAATATAAATAAAAAGGTTGAAGATTACTGAATAGCCCTTATTTTGAAAAGCACACTAACTCTTACGCTGGCAAATTCCCTTGAAGACGTAAGCACGTACCACTCTTTTTTATTTTTTCTGTTATAACAAATGCTATTACTGTGTGCAACCTTTTCTTCTGTCATCTTTATTTATGAATCTGCAGGAGCAACATTTTACACAGACAAATGCCATGTACCATAAAATGTTTCACCTCTTCTAAACTTTATTCAATCATAAGTCATAATATATTAATTAACCATTTTAGTATTTTTTTTAACTTATTTTTCTTTAATTTATCTAAATAAAAAAGAACACCTATAACTGTTTTTTGATTGGGTTAAATATAGTAATACACTGATTCTTTATATTACTGGTTTTAAGAGTTAATCAAAGCAATCTCATAACCAAGTTTTAAGTTTTAGTTGGATAGGTTAAACCTATTCTGACAACTATATGCTTTGACTGTAATTAATAAGTTGACTGTATATTTATTCTAAGAACGATTAAAACAATCTCAAAAAAATAAACTCTAAATATTAAAACAATTTTAAAAAAATAATACTACACATTTATCACATGAATACCACGTTGAACAAAAATTCTTGCGGTAGACATCTAACACATGTAACATCCTTAGTTACATCGACGTTCAATCTACACAATTAAGAACACAAATTTAATGTAATAAATTTTATAATTATAAGGGAAAAACCTTAAACTCACTATATTAACTAAGAGAATTTATTAGCGATAAGTGTAATGATAATTAGAAGTAGGTTTAAGTGGAGGGTGAAATTATCATGTGATGTGTGTCCCTTATCATTCGCGTGCCCTCTGGTTTCTTTCTCGCATATTAGGCGCTGAAACTGACGTACCCTCTCTCGCTCTCTCTGTCACACTGTGGGGTCTCTCTCCATGTCTTGTCTTATCAACCTTTCCTCTCTCTCTCTCTCTCTGGTCCATTTTACTTCACTTCTCTGTCTTTACTCCTCC


Gene Sequence:
>Vu_19539(-)
AAGCCTCTAACACAGCACTACACAACACAGCCCTTCTCTCTCTTTTTCGCTCTCTGCACCTTGGTTTTCACTTTCCCTCTGCTTTAAGAACCCACCACTGCTTCAACTTGTGCCGTTGTTTCATGGACCAGACCTCATAGCTTATCTCTCATTAGGCAGTCACACCGACCCCCTGTGAGCATCTCCTCTTCATCTTTTTAGCTTTTAACCATCTGGGGTGCTTCCTTTTTTACTTCAAGTGCTGTAGGAACCATCTGGGGTGCTATGCTACCTAGTATGAAAAAGTTCTTTTCTTTTTTCCACACTTTTTAGCTTGTGTTTTTATTTTGTGGTGGCTAACTGGATTCTGGAAGTTTTTTCTCTCTTTTTTTTTTTTCAAAAGGGTTGTTTTTTGTAAATATTTTGGCGATGTTTGTAAAGTTTTGTTGGTTTGCTGTGTTCTTTGCACTGTGTATGCATGTTTGAGGATTTGGCTTATGCGAATTAGTAGCCAGTGAGAAAATGCAGTGAAGCTCCTTTCAGCATTTTCCTTGGTGTCTTGGTGTGCTATAATGTTAACTCAATATTGTGTTACATGTTTTGGCTTATGTGCCCTTACTTTGGTGCTGCTTCAGATGGTTTCGTGGAGTTCCTGAATTTGTATTTGCTCGTTGATTTTTTTGCTTTCTGTTTTAATTACCGTAATGTTTTCAAGTTTAGTCTTTATTTCTCTGTGTCTTCCTTCAATTGATGTTCTGAACGCTCTTTGGGTCTCCCCGTCTGTCAATGAGCTTACATAAGTGCAATGTGTGTATCCGAAGCTTGTGCGTGTGGATAATCAGCTAAAGCTGCAATTGAAGAATTGGGATATGACCACTAAACTACTCTTAAAGTTTTTTTTATATTGTGGGGGAAGGGAGTGGTTAAGCTACTAGTACAGTTTTTTCTCGTTCATTGTTCTTGATTGTATTGTTAGAAGAGCACATGGAAATAATTCATGGAGAATGGCTTTATAGATTCACTAACTGAAGTTCTGAAAGAATAGTATTGTTGCTAATAGTACTTAGGCTGAGAAAAAATTGTTGTTTTGAAGTTGAAGGTATTGATCCTTGGGCATTTCTACTCTTATCACATGATCTCTTACAAAATATGTTTTATGCATTGTTTGTTTCTGTTAGATGCTTCATGCAGTTAGTTTCCATTCTTTATTTCTGACATGTATTTGGCATTGTCACGTGAACTCTTTTTTTTGAACATTTCTAGTGCTGCAATACAGGAACAAGTGAGAGGGAAAATGATGCAGAGACTTGTTGTTTTGTTTCTTGTCTTTTGGTAGATTGTATTTTTAAAAAGCCACAACTTTTTGGTTTTTATTAATGACTTAATCTTTTGTATCTCTGTCTGATCTTAACTGAATTGTTCTAGCAGATAGTTGTGTATAATGTTTAACTATATATTCATGGAGGATGAGCTTGTCTTTGTTTTATTTACCAGATTTGTATGTATATCTAAAGAATGATATGAATGCATTGGTAATAACAAGAATTCAGTGTTGTCTGATTACTTTTGCTCATTTGTGCACATGTGGTTGGAAACTGTAAAAAATCTACCTTTTCCCTCACAACTTTGTTCTTAACTTGAACTGTGATGAATTGATGCCTCATCTTGTGATGAATTTGGTAGAGACATCATGAAGATTTCAAGTTCCAAGCAACTTGCTGTGGGATATGCTCTTGGAAATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCATTACTACGCGCATACGTCAAGCAGTATGGTCCAAGAGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATGCAAAGTCATGCTTAGAGAGGTGGAAGAACTACCTGAAGCCTGGCATTAAGAAAGGATCTCTTACAGAGGAAGAGCAGCGTCTTGTCATCAACCTTCAAGCAACACACGGAAACAAGTGGAAGAAAATAGCAGCACAAGTTCCAGGTCGCACTGCCAAGAGGTTAGGAAAGTGGTGGGAAGTGTTCAAAGAAAAGCAGCAAAGAGAAACAAAGGGGAATAACTGCACCATTGACCCGATTAACGATAGCAACTACGAGCATATACTCGAGAGTTTTGCTGAGAAACTTGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCATTTCTGCACACCGATCAACCTGCGCCTGCACAGGCCTTGCTTCCATCTTGGCTTTCAAACTCCAATGGCACAGCACCTGTGAGGCCACCCTCACCTTCTGTGACTCTCAGTCTGTCTCCCTCGGCGGCGCCACCTCCGTGGATGCAACCGGTGAGAGGACCAGACAATGGTGGTCCTCTTGTTTTGGGGAATGTGGGTCCTCATGGAGGTGTTCTAGCATTTGGTGAAAACATGGTGATGTCTGAGCTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCTCAGAAGAAGGAGGCGGCGTGGCGGTTGAGCAGGGTGGAGCTGCAGCTGGAGTCGGAGAAGGCAGGGCGGAGAAGGGAGAAGATGGAGGAAGTTGAAGCAAAGATCAAAGCTTTGAGGGAGGAACAAACAACTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTAGCAGGATTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACATGCGTCTCACCAAATTTCTAGAACAGGTAGGATGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAGAGTGACAGACATCATTCACATCTGGGAAAATTTCTAGTTTACTCTTACTATTATTTATGTCTTGAATTAATATGAACTTTATAGTCATAGTAGTTTTGTTCCTGTCATTATTCTAAAATTTGTTGTTACACATGGCTCTTAACATCCCTATCTTTTCATACAACTTCAGAACTTGCATTAGCTACTCGTGTTTGTTAACAATCACTTTATGAATATTGACTTTGTTATCATTCCATTTTGCTTG