Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19816 LG5 13453976 13459138 PREDICTED: shaggy-related protein kinase epsilon isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   meristem structural organization, hyperosmotic salinity response, positive regulation of response to salt stress, hyperosmotic salinity response, protein phosphorylation, positive regulation of response to salt stress, phosphorylation, protein phosphorylation, protein phosphorylation, response to salt stress, protein phosphorylation, signal transduction, protein phosphorylation, response to salt stress, protein phosphorylation, phosphorylation
Cellular Component   is active in   cytoplasm
Cellular Component   located in   nucleus
Molecular Function   enables   protein serine/threonine kinase activity, protein binding, protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein kinase activity
Pathway   B 09191 Unclassified: metabolism   C 99980 Enzymes with EC numbers
SNP Position Effect Amino acid change
G/T 13454457 missense_variant p.Pro266His
A/T 13454695 intron_variant
G/T 13454696 intron_variant
A/G 13454842 splice_region_variant&intron_variant
T/A 13454941 intron_variant
T/A 13454943 intron_variant
G/A 13455097 splice_region_variant&intron_variant
T/A 13455631 intron_variant
C/A 13455756 intron_variant
C/T 13455757 intron_variant
A/G 13455971 intron_variant
A/G 13456348 intron_variant
G/A 13456423 intron_variant
G/A 13456429 intron_variant
A/G,* 13456443 intron_variant
A/G,* 13456445 intron_variant
A/G 13456461 intron_variant
G/T 13456622 intron_variant
C/A 13456624 intron_variant
A/C 13456679 intron_variant
A/T 13456852 intron_variant
G/C 13457090 intron_variant
T/A 13457091 intron_variant
G/T 13457156 intron_variant
G/A 13457638 downstream_gene_variant
T/A 13457726 downstream_gene_variant
G/C 13457845 downstream_gene_variant
A/C 13457847 downstream_gene_variant
C/T 13457991 downstream_gene_variant
G/T 13458052 downstream_gene_variant
C/A 13458302 downstream_gene_variant
G/A 13458312 downstream_gene_variant
T/C 13458319 downstream_gene_variant
C/T 13458365 downstream_gene_variant
A/G 13458660 downstream_gene_variant
C/T 13458666 downstream_gene_variant
C/T 13458691 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19816.1
MASTIGKPGDDSMIVEKLPEEINEMKIKDEKEMDTAMVDGNGTETGRIIVTTIGGRQGQPKQTISYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGDSGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALDACVHPFFDELRDHNTRLPNGRPMPPLFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF*


CDS Sequence:
>Vu_19816.1
ATGGCCTCTACTATTGGTAAACCGGGTGATGATTCCATGATTGTTGAAAAGCTCCCGGAGGAGATTAATGAAATGAAAATCAAGGATGAAAAGGAAATGGATACTGCAATGGTGGATGGAAATGGAACTGAAACTGGCCGTATTATTGTGACCACTATTGGTGGTCGACAAGGTCAACCTAAACAGACTATAAGTTACATGGCAGAACGTATTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGCTAAATGTCTTGAAACTGGAGAAACTGTAGCAATCAAGAAAGTTTTGCAGGATAAAAGATACAAGAATCGCGAATTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTATTTGTAGAGCCTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCACAGGGACATTAAGCCACAGAATCTGCTGGTAAATCCTCATACACATCAGGTCAAACTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAACCTAACATATCGTATATCTGCTCTCGATACTATCGAGCTCCTGAACTCATATTTGGAGCCACTGAGTATACTACTGCAATTGATATGTGGTCTGTTGGTTGTGTGCTGGCTGAGCTGCTCCTGGGGCAGCCTCTGTTTCCAGGAGATAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTACTCGGGACTCCCACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAGTTCAAGTTCCCTCAAATCAAGGCTCACCCCTGGCATAAGATATTCCACAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTTTCAAGGCTTCTCCAGTATTCTCCAAATTTACGAAGTACTGCTTTGGATGCATGTGTTCACCCATTTTTTGATGAACTCCGCGACCATAATACCCGTCTCCCTAATGGGCGCCCTATGCCACCCCTCTTTAATTTCAAACCTCAAGAGCTGAAGGGAGTGACTTTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCTCGGAAACAGTGTCCATCCCTTAATTTCTAG


Promoter Sequence:
>Vu_19816::LG5:13459138-13461138(-)
CACCATTGGATCCAAGTTAAAAAAACATGACTACAATAAACAAACCTGATTGTCTTTTGCGACACTAAAAAGTTAGTAAAATCAAGTATATCATTGATTTTAACTTGCAAATGACTTTTTTTTTCCGTATCATCGTGGAAACTAGAAAAAGCGAAATCTCATATATAATATAAAAACACAAAAGAATTAATTTTTTTAGCATTGCATTTATTTTTAAATCTTTATTTTAATTCATTTAAAATACAGTGTTTAGGGTTTAATAAGCGTTTCACACTATTATATTATCACCGTGCAAACAATTATTTTTTAAATATATAGAAACCTTTTATATCTTACCAAAATAAAGAGCTCTCAAACATAAGCCAAAGTTTTGGTAGTGCATTATCTTAAAGATTTAATAATACACTATTCATAATCTCAGATATTTGTATCATCTTCATCATAAAAAATCAAAAGGTTCAATCTCACGGCTGTATGCAGTTTGTATTTTGGCCACTGTCCGCTGAACAACGACCGCAACAAACAACATAATAGACACAAACTTATTTTGTGCAACTCCGAGCCACACTTCTAATTCTGCATTTTTCTGTATCATAGTTTGTCGTATACGGGACTGTGTCTTACTCATCTTAAAGCCTAGTAGCCAATACAGAATACGTCCTTTTACCTGACCTGACGTGATGTCAGACTTTAAAGACTTTTTCTCTCTCTCTCTCTCTTCCCATGTGGCCAACACATCAGTGCGGATGTCGAAACTGCCTCTTAACAAAATCTAATAAAACCAGTGAGTTCCGCTTTGTGCGTGCTGGTCTTGCTGGTCTTCCATGTTTTAATCTAATCTATTCATTCCACACGAAAGCTCGTAACTCAGTCAAACCTGCAAGATACGCCTCTGAAACTAAAGCTCACACTCACTTCCTCACGCGCTTTTCTTTGATGCAAGAAATCATCTTTCTTTTTCCGGTTTAAACTTTGTTCCTCTCTTTCTTTCTCACTCTCTCTCTCTCCAAGTGGAGTTTTCATTTGGATGGGAAAATGTCAAGTTCTCGTGGCATATTAGCAGGTTTAGGGTCTTCTTGGTGAGAAAAAAAAAGTACATTTTCTTCTCTCCTTTTCAGTGTTGTGTTTTTCCAAACATGTGGAGCTCGGTTATGGTGATTTTTCTTCTGCGTAGGTATTCTTGTCTAGAAGTAGCGTTAGTTTTGCAACTTTTGTTAAGTTTAACCAATGACTCAATATCTTAGAGCTTTTTTGGATGTTGGGAGGTAGCTTATTTTCTTGCGTCTTCTTAGCAGCCTAAGTTTGGGAAGGGGAGCAGCAGTTTTTTCTAGCTATAAATAGCTAACTGTCCTTTGAGTGCGCAATCCTTTTTCTTTTTTAATTTTTAATGTACTTATTTGTCTTTCAGATGCTGCTGGGTTGTTTTTCGTTTGTTTCGATTTATTGCACTCATTACTTCTTTGTTTTTCGTTTCAATTTAATGCACTCACTACTTTGCTGGAAATTAAGATTCATGAGTTGTTATTTGATTTGGTAATCGATGAAAAATGTTCACAATGTAAGTATTGATTAGGTTTCTCATGTATCTTCGGTGCATTGTGAAGTATGCGTAAGCCCGTGTGGGCCTTCTCTAGTGAATAATACGAGTCGTGCCATTTCCAATTATTTTGATATTGTGACTGGTATTATTGCTATTGATTACAAAATGATTGTTGGTCTTTTCTTTCTTCTTTTGGTCTGGTGCTACATAATGAATTGCTATGTATTACTGATATGGACTCTGATGATTTACATTCAAATGGAACGTGGTTGGGGATACTAACTTTAGCGTACTCTGTTTATGGTGCTTGCTTTTTGCTCATTGACTGATCACTCTTCCTTATATTAGATTATTGTTTAACATTTTTGTTCTCAAATATTTTCAGGTTGTGCTGATCTACAGTGTTGATTTGAAGGTTTTGATTAACTGAAAAGGTTTGATCTATCTTGGTTCAGCATAT


Gene Sequence:
>Vu_19816(-)
ATGGCCTCTACTATTGGTAAACCGGGTGATGATTCCATGATTGTTGAAAAGCTCCCGGAGGAGATTAATGAAATGAAAATCAAGGATGAAAAGGTCTTGAAATTTATCTTTTCTGTACGCCTTGTCCCTTTGTATCATCAGGTTCTGATCATCACTTATGCTTCCACCCCTCACAACAAATTCTATGTTTTTGGTAGGAAATGGATACTGCAATGGTGGATGGAAATGGAACTGAAACTGGCCGTATTATTGTGACCACTATTGGTGGTCGACAAGGTCAACCTAAACAGGTAGATTATTTTTATAATACAATTGAATTATATTATCAGTTTGGTTTTCTTGTTAATTGAACTGTACTGCACAAGTGATGTTCATGTATGTATCCTTTACATTAACAAAGAAAAAGCCAAATTTTGTTATAGAGGTCCATGTTTCTTGACTCTTGAAGAATTCACAATGGTTCCATGGATGTGGGTAATGGGTACCGAACTATGTAAATTCATGCTTTTTGCTATTTTTCATTTGTGGTACTTTTGTGTGTTCTATACCTTTTATTCTCATTATGGTAGGATATTTTGGGTGTATGAAAGGAGAAAGAATAATTAGAAAGTAAGTTAGCTGGGTACATGGGGAGTCTGTTAGTTTTGTTAGTGGAAGGGGAAGGGGAGCCTATATATAAGGCTTGGGGAATATTGTACAGAGTTAGTTTTTGAGCATTCTTTGAATAGGCAGGACATTTTATATCCTGTGGAGGAGGGAGTTCTTCCTTGGGAGGTTTTGTACAGTTGACACTTTGATTCATATAGAAGAATATACATCATTCTTTCTTCTTTTCTGTGTTGTGTGTGAGTGGGTATCGTGTAAAGCGATAGTTCTTGATTCAAGAACCTATCACATTATGTGTGATGAGGATTTTTTTTCCCAAGGGGGATACTAAACACTTAAGTACCTTCACCAAGCATTCCATACTATTTGATGTGAAACTTATGCTGCTCAAAATACCTCAGAATATGTGACTTTGTGACACTTCACACAACTCCCTCGCATGTCAGAACCTTCCATAGTAGCCATTCTGTTTTTGAGGTACGAAAAACCAATTGATAAACACCAAGCACTTGAGGAGCCTATCCTCAAAGCTAGCTTTTAAGCGGTGAGAATAAAATATTTTGATACCACTTTTATTTGAGAATGCAGTTGGCCCTAATGTTAAGTCTGCCTGACAGAAGACTCACAAGTTATATCGTATGTAGCACACTAGTAAACAATGAATTGAAGATAGTGGCAAAAACCATGCAATTGTGTTTTGGTTAGTTAAGGGGATATTGGGGATAGTCTGTGCGAGTGAGGGAACCAAACTCCCCGTCTTAAATATGTTAGCCTCTTGATCACTAGGGAAAGTCCTACTGGTCTACAAGGCTCATTGAAACTCAATGTCTTTGTCGTATTGGAGAATGTCTGCTAGGACCAAGTCAGAGCAACAACCTTTTTCGAGATGAGTTTCCTAAGAAGATTCTATGTAGCTCTTGGCTCACCTAATATCATTCTGTTTACTAGTTAATTTTAACCCTTATCTCAATCTCCTTTTTATCATAATGTTACTCTTGTTATTTGTGTTCCGCAGACTATAAGTTACATGGCAGAACGTATTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGTGGCATTTAATTGATATGTTACAGGTTAGATTAATTGCTCTAAGATAGCTAATATAAAGTTGATTTCAGCATATTTGTTTTGCAGGCTAAATGTCTTGAAACTGGAGAAACTGTAGCAATCAAGAAAGTTTTGCAGGATAAAAGATACAAGAATCGCGAATTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTGTATCACTAAAACATTGCTTCTTTTCTACCACAGATAAAGATGAACTCTATCTCAATTTGGTACTTGAATATGTACCTGAGACTGTATATCGTGTGGTGAAGCACTATAGCAAGGCAAATCAGCGGATGCCCCTAATATATGTTAAACTTTACACATATCAGGTTCTTTACGTATTACTTTTATGATAACATACTTCTGTTAGTTAAATTCAGATGCTGATCATATAAGAAGTGTGTATGACATTGTAAGCACGGAATTTTGTATCATCAATTACTTATTGTTGATTTAAGTAAAAGTCACAAGATGATAACCTAAATTTGGTCCTTTGTGAATTTTCATGTCAGAGAATAGGCCCTTATTTTCTGCCAATTTTGTGCAGTTCCTTCTATTCTTGTTCACTTGAATACTTGAACTATAGATGTCTGTTACGATCAGAGTACTAAATAGCATGCTAAAAATGATACTACAGTCATTGTGCATTGTGAAATGGTCCAGCATTATTATTGTGGTGGAAATTGGGGCCATTGGTGCACAAGCGTAAGCTCAAGACATAGTTTGGTGGGCAATCTTGATTCAGATATTCATTTTGTTTTACCTTCATAACCAAAACTCAGTTTTACTACCTTGGCAAACTTGTCTTCTGTTTTAACTTTCAATGGAAAAGACTACTGCTACTTGATTTATTGTTGATATATTTTAAATTTTACATTTGAATGACTTGAATGAATAGATTTTAAGATTAGTAGGTTAGTGTTTATATTGGAAGTTTATAACAATATATATATATATATATATATATATATATATATATATATATACACACACACACACACACACACACACACGTGTGTGTGTTCTTAATATCCTTTAAATTTTATGAATTGCTATTGTTATTATTATTTATTGCTTTTTTTTGTTAAAATTAATAATGGTATTTCCAATGGGTATGCTGCTTCTTATTTTAATTAGGATTTAGGAGTGTATGTTGTAATAGTTGCTTACATTTTACATAATAAAATTAATACATTAGGGCTTTTTTGCTTAAGGATGAACTTGACCTCCCCATAGTGTTGTGCCATTAGGGCTTTTTTTAGCCTGTGGTACCATGTTGTGGTTTTACAATGGCTCACTAATTTTTAATTTAGGTTTGATGGTACGTTATAAAATGGAACAAAAAGAAGTGGAAAAATTAGAATATAATTTCTCTGGGCTTGAGTTCTACCCATGGGTTCCTTAGGCATCGGACCTTAGGGCTGATTATACTTTTTTAAATTGGAAAGCATCTCATTTGTGCTAAGTATCAGATTGCTTTATCCTTAATGCGTCTCAAAATCTATGTATGGTCATTGTTGTTAATTAATTGTGATGAATTCCTTTGTTCTTTGATAGATTTGTAGAGCCTTGGCTTATATTCATGGATGTGTTGGAGTGTGCCACAGGGACATTAAGCCACAGAATCTGCTGGTTGGTATCACTTCAGAAAATTTTTATATTTTTAGTTTGGTGATTTGTAATCAATGCCATTTTTTCTTCAGGTAAATCCTCATACACATCAGGTCAAACTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTATGTTCCACTTCTGTCTAATGTCTAGTGAAGGTTATTGGCATATATTATGATTGGTTATTTTATGTTTCATGTTCCATGTTCTTGCATTCGTAAATACTTTTGTCTATTATTTTATTAGGCATTTATACCCAGAGTAATCAATTGGCTGATATTTGGTACACTCCGGTCACTTAGATAAAATGGCGGGGTATAGGTTTTCTGAAACAGTTTTTTATGACATTTCATATCTGATTAGATGGAAATGTTTAGTGTGTACTTAATTTAGGTAATAGCAATTTGAGGCATTTCTAAGGTCATCAAGTCCCACATTGCTTAGTTTTTCACTCTTTCAAAAGAGCTTATATACCAAGACTCTCCATATACTTTCAAAGTAAATCGCTAGGATTTCAATTGGGCTAATTCTGCTGCATTTTTTTCCCTTTAACAACTTCTAAATGAAAGCAGTGGGTTGAGAAGAAAGCTCTCAACATCTATCCATGCTTAATGGGTTTGGAGTTCATTTATTGAATTGCGGATTATTCTGTTAGCTTCTTAAGTAGTATGTATTTGCTTCCCAATTGTTTTGTGCAGGTCAAGGGTGAACCTAACATATCGTATATCTGCTCTCGATACTATCGAGCTCCTGAACTCATATTTGGAGCCACTGAGTATACTACTGCAATTGATATGTGGTCTGTTGGTTGTGTGCTGGCTGAGCTGCTCCTGGGGCAGGTTTGCATAAACAGTACTCATTCATTAATTTTCTTCCTATTCTTGCAATTTTGAAAGGGTCAATATCGTGTTGCTTACAAGTCCTCTTCACTGTTGGCCATCTGTGATTTGTAGCCTCTGTTTCCAGGAGATAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTAAAATTGTTTGTTTTTAGCTTTTTTGACCTGACCTATGATATGATACCTTAACCATTTTAAAAATATATGGCTATTTGTTCTATAAGCTTCTCTAAATTGCGAATTATTTTTTCATTTTTTAATGTTTTAGGTACTCGGGACTCCCACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAGTTCAAGTTCCCTCAAATCAAGGCTCACCCCTGGCATAAGGTGAATTCCATGACATGCAGACTAACCAATTGCATTAGTAATGTAAATACTGTTTGTATTGACTTGGCAATTTTTTAAAGTAGATATTCCACAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTTTCAAGGCTTCTCCAGTATTCTCCAAATTTACGAAGTACTGCTGTGAGTGTTTGTTTTTCCTAGAAGAATATATATTATGAAAATATTTAAAATTTGTTGACTTATTTGTAGTACATGAGTCATTTCACAATTCAATTGAGATGATCATTAAATAATTTCGTTTACTGTAACTTTTTGCAGTTGGATGCATGTGTTCACCCATTTTTTGATGAACTCCGCGACCATAATACCCGTCTCCCTAATGGGCGCCCTATGCCACCCCTCTTTAATTTCAAACCTCAAGGTAGAATGCTTTCCATATACTCTTATTTCTGGTTTAAGGGCCATAAAACAACTTTTTGATATCATGTCTTTTGAACGATGACATATCAAACAGAGCTGAAGGGAGTGACTTTGGAGCTGCTATGCAAACTTGTTCCAGAACATGCTCGGAAACAGTGTCCATCCCTTAATTTCTAG