Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19844 LG5 13962529 13964318 PREDICTED: squamosa promoter-binding-like protein 8 isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   microsporogenesis, microsporogenesis, anther development, anther development, megasporogenesis, anther development, anther development, microsporogenesis, megasporogenesis, megasporogenesis, megasporogenesis, microsporogenesis
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA binding, DNA binding
SNP Position Effect Amino acid change
G/A 13962603 missense_variant p.Ala183Val
G/A 13962606 missense_variant p.Ser182Leu
A/T 13962612 stop_gained p.Leu180*
A/T 13962763 intron_variant
C/T 13963263 intron_variant
T/A 13963410 intron_variant
G/A 13963876 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19844.1
MSKSEDVTSPVNFECSGHGFGPGPGLGLNLGGRTYFAASNEDTLDRFYRCKTVESVSTVASNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQDIHKSQPSLDNVTWSSSESGAQSSSSMKVAVSPPDYFQQNRGTSSTSSSGSLFFSSGANLHG*


CDS Sequence:
>Vu_19844.1
ATGTCCAAGTCTGAGGATGTGACTTCGCCCGTTAACTTTGAGTGCTCTGGTCATGGTTTCGGGCCTGGACCCGGGCTTGGACTCAACCTCGGTGGTCGCACTTATTTTGCCGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTGCAAGACGGTGGAATCGGTTTCCACCGTGGCGTCAAATTTGCCACGCTGTCAAGCAGAAGGTTGTAACACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAGGTGTGTGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGGCAACTCAAGACATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGGTCCTCTTCTGAATCTGGAGCTCAATCTTCGTCATCAATGAAGGTGGCAGTGTCACCCCCAGATTATTTTCAGCAAAATAGAGGCACTTCGTCAACATCATCATCTGGGTCATTGTTTTTCTCAAGTGGGGCCAATTTGCATGGCTAA


Promoter Sequence:
>Vu_19844::LG5:13964318-13966318(-)
CTCTTCAGAGATGAAGCTAAAGTAGCTCTTTACACCTGTGAAGTAAATATTGTAGGGTAGTGATTTTCTTTCATGATATTAATTAATTAATTATAGTTTTTATTCAGACATTACTACTTGCTTGCTGCTGCTGCTGACCACTGGTCTTGCTTCTTTGGCTCTATCATTCTGGCTCTGAAGCAGAGTGGTTGGACCTATAACAGATAGCTGTTGAAGCAGCAGGCATGGCAGCTACAACATTTGTATTTTTCTCTCACTATTAGAGAAACTCTCTCATTATTGGGTACAACCAGTGATTGTTATTTTGTTTCAGATCAAGTCAAACAACCCAATAATTAATATTAATGCCACTTACATATATTTTTTAGAGTTTAAATTATATTTTATGACATTTTAGATATTAAATAAAATATGTTAAGATAATAAATAATACTTACCTTTTTGTGGGTCGAAGGTTTGGTTAACTTAAAATATGACTAATTCATTAGAATAATATGATAGGAATTATAAAAATATCATATTTTAAAAAACATTACTAATATAATCCCAGTAAACAGTCTTAAGCATTTATAATGGAGAGTTTATTTTATATTATTTGTAAGTTTGAAAGAATTTGTAGTAAAAGGTCAACCGTTATTATCACTCTAGAGTTGAGATGCTTTGTAGTGATACATTGAACTTGAACTTCCATCTATCTTTAAGCAAATTTTATCTCAAAATTTGAAGAGTTGTGTAGGAATAAAAAATTTTTGATCTATGAGTAAGTCTTTTGTTACTTAAAATGATAAAAACTTTACTTACAAATATTAACAAATAAAAGAATATATTTATTATATACAAAATGTGTAACTTAAAATAGTCTTGTTAATTAATAAAACAAATTTTAATAAGAATAATTAGAAACAAATAATAATTATATAAGAAAATAAAGTATAATGACAAAAGAAGTTAAAGATACATACTTTAATTTTAATATAAGAACTGAAGAAGGTAAATAACTCTGATACGAAACAAAAATAAGAAAACACAGTATGTATCTGAACTAGAATGTCGAAAATGAATATAGAGTTTAAGATGAGAAAAACCAGGAAAGAATAAGGGAGTAAAAGAAGAAAAATAAAAGTAGAATATTTGAAGTACTGAATCACTAACATCACTTAAGAGAGAGGAAAAAATGAGAATGATTAACGTTAACATAACAAGGGGACGAAAGTGTACAGCTTTTACATGGTGAAACTGTGATATTTTTATAACACCCTCCTATTTAACAGGAAAAAAAATACAGACATATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATACATACATAGAGAGATAGTGAGAGGGAAGAGCTGAAATATACGCCATAAGAGTGTGAAATCAGGGAAAAAGTGCAGAGACAGTGAGAGCCTGAGAGTCGTGGGTGTGTGGTTATCAGTACTTAGCCAAACCCTGCAAATTAGGCTTGCGTATTTCAAAATCGAAACCCAATCTCACTTTTCTCTACCACTTTTACACTTACAAAAACCTTCAACACCATATCAGAGTAAAACTAACAATTTGCCTCACGCTCTCTAAGCCATATATAAACATGTTGGATTACGAATGGAACTCATCAATGATACTCCTCGCCGGAAATGAACTCACCGCCGGCGAACCCGACCAAACGCGCCGGCAAATTTTCGACCACAACTTTGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACACCCACCACTGCTTTCTCGATTCACCACCCCTTCAACCCACCACCACAACAGCAGCACCACCATCACAACCCCCAGCAGCACTTCTTCGACCCACGCGCCTTCCAAAGCGCGTCCTCCGCTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTCTAGCTCGCTCCCACTGTGGACTTGGGCCTGGCTCCGGGCTTGGGTTTCTGCTC


Gene Sequence:
>Vu_19844(-)
ATGTCCAAGTCTGAGGATGTGACTTCGCCCGTTAACTTTGAGTGCTCTGGTCATGGTTTCGGGCCTGGACCCGGGCTTGGACTCAACCTCGGTGGTCGCACTTATTTTGCCGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTGCAAGACGGTGGAATCGGTTTCCACCGTGGCGTCAAATTTGCCACGCTGTCAAGCAGAAGGTTGTAACACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAGGTGTGTGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGGTTGTGGTCTTTAGGGGAGGGGGTTTTACACAATTACGAATTTGCCACTGGCCGTTGTAGTTTGAACCAATCATTGGCTTCGGGGTGATCCTTTGGGTATTTCCGTCCGGTTCAGGAAATTTCCCTCTTTCTCTTCCATTTTTGTTCTTTTTGCATTGCTTGTTATAGTAGTGCAATTACCCAAACCCTTAACTGTGCTCTTTCATATCATAATTAATTATCTTTCATAATTATAATATATGAAAAAAAAAAAGGAAACTAACACCTTACACCCCATGTTTTTCTACCCAATCAACTTTTTAATAGGTTGAGTTAATTTCGATTCCAAACCGTTAGAAGGAAAATATCCTCTCTTTTTTCTTCGATGTTGAAAGGAAGTATCTTTTGTCACTCCAAAATTAATTATTTTCGGTATAAAAAATTCATTATATTTTATTTTTCATTATTTTGTCGCATGAAAACAACTATTTATACCATCTATTTCAGAGTTAACTTATTCTTATTTCATCTTAAAGACAAGTTGTGAAATTACATGAAGGCATCACGTCGGTGGTTTCCTAGAATGCAGTCGGAAGGATGAGATCAGAAATACGAGAATGTCATTTGGAACATTGTTTTTTGTCCCGTGATTCCGTAACGAGGGCATTCGCGTCCCTAAAATTTTCTAACATCGCCGACGTACTACCAGTACTATCCTGTTTTTACGTTTTTTTAGCTGAAGCATTGAATTGCAACTTCAATAAATGAGATTCTCTATTTTCTATGGGTTACTTTACAACAATTGCAGCTTCATTGTTGATTTTAAGTGAAAGGTACCTTTTTTAGTTTGACATGTGTTAATTGATTTTAGTTTGGTTTTGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGGCAACTCAAGACATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGTACGGCTTCTTCTCTTTTCTTCATTCTCTTTCTCTTACCCTTCATAAACAACAAGTACACAATATCTTAAATTCTCCTTAATCATTTCAAACACACTTTTAATTGTATATAATGAACACTGTTCCAGGATTCGCACTACTTTGTACTTGTGCTTTTCTAGAATAATGGAAATTCTCTTTTTCTGTCTGCAATAATCACACGTTTTAGTACATAAACTGATGTACCCTTTTAAACCAAGAGTTGAATAAATCGATTAGGCCATAATTGTGATGTGGTAGTGATTAACCACATGAATCTGGCAGGGTCCTCTTCTGAATCTGGAGCTCAATCTTCGTCATCAATGAAGGTGGCAGTGTCACCCCCAGATTATTTTCAGCAAAATAGAGGCACTTCGTCAACATCATCATCTGGGTCATTGTTTTTCTCAAGTGGGGCCAATTTGCATGGCTAA