Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20030 LG5 17087637 17090747 "PREDICTED: protein kinase APK1A, chloroplastic "
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root development, protein phosphorylation, anatomical structure maturation, root development, protein phosphorylation, protein phosphorylation, plant organ morphogenesis, cytoskeleton-dependent cytokinesis, cytoskeleton-dependent cytokinesis, cell differentiation, plant organ morphogenesis
Cellular Component   located in   extracellular region, extracellular region
SNP Position Effect Amino acid change
G/T 17088051 missense_variant p.Leu319Ile
T/A 17088143 splice_region_variant&intron_variant
T/A 17088305 intron_variant
A/T 17088315 intron_variant
T/A 17088322 intron_variant
G/A 17088561 intron_variant
A/C 17088886 intron_variant
T/A 17089979 intron_variant
T/A 17089989 intron_variant
G/A 17090137 intron_variant
G/A 17090139 intron_variant
T/A 17090140 intron_variant
G/A 17090141 intron_variant
G/T 17090150 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20030.1
MSSTLAAIFGGAAGAVALVGIAILIWFCLSRQRNASRTSETGSSDPSQVGRHGAIELPIRDTRRFEMEELSLATKSFSDKNLIGEGKFGEVYKGLLQDGMLVAIKKRRGLASQEFVDEVRYLSSIHHRNLVTLLGYCQENNLQFLIYEYVPNGSVSSHLYGRGQQSQQKLEFKLRLSIAQGAAKGLAHLHSLSPRLVHKNFKTANVLVDENFIAKVADAGLRNFLGRVDTAGSSSQVATDEIFLASEVREFRRFSEKSDVYSFGVFLLELLSGKEATASPFPDSNQNLVEWVVSNEERDMMSYDRRLESSFTAEGMEDYIMLMIRCLDPSSERRPAMSYVKTELDRIIEKEMKLTTIMGEGTPYVALGSHQ*


CDS Sequence:
>Vu_20030.1
ATGTCAAGTACTCTTGCAGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGCTATACTTATATGGTTTTGTTTGTCTCGCCAGAGGAATGCTTCTAGGACTTCAGAGACAGGTTCCTCTGATCCTTCACAAGTTGGAAGACATGGTGCAATCGAGTTGCCTATACGAGACACTAGACGTTTTGAGATGGAAGAACTATCTCTGGCAACAAAAAGTTTCAGTGACAAAAATTTGATTGGAGAAGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAACGTCGTGGACTCGCCAGTCAGGAATTTGTGGATGAGGTACGTTATCTCTCATCCATTCACCACCGGAATCTCGTCACTCTTTTAGGCTACTGTCAGGAGAACAATCTTCAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGCCGTGGTCAACAATCGCAACAGAAGCTAGAATTCAAGCTTAGGCTTTCAATAGCTCAAGGTGCAGCTAAAGGTTTGGCTCATCTTCACTCTCTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACCGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTGGCAGATGCTGGACTCCGCAACTTTCTGGGGAGAGTTGACACTGCAGGCTCCTCTTCTCAAGTGGCAACAGATGAAATATTCCTTGCATCAGAGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGCGATGTATACAGCTTTGGAGTATTTTTGCTGGAATTGTTAAGTGGGAAAGAAGCAACAGCATCACCATTTCCAGACTCTAATCAGAATCTGGTTGAATGGGTGGTAAGCAATGAAGAGCGTGACATGATGTCTTATGATCGGAGATTGGAGAGTAGTTTTACAGCTGAAGGAATGGAAGATTACATCATGCTCATGATCAGATGCTTAGACCCTTCAAGTGAGAGAAGACCTGCAATGAGCTATGTGAAAACGGAACTTGATAGGATCATAGAGAAGGAAATGAAATTGACAACAATCATGGGAGAAGGAACCCCATATGTGGCTCTTGGAAGCCATCAGTGA


Promoter Sequence:
>Vu_20030::LG5:17090747-17092747(-)
GCTAAAAAGGAACAGAACCGTAGAGTTTGCCGTTACATATTCCTTGCTTTTTGTCCTAAATTTCATTCACTTACGGACTAACATGATCCTTACATTATTATCATCATCATCATCATTATTATTATTACACACAAATATTTAAAATTCTCAGTAGGAGCAACGTCAACATAGCTGGCTGGTGGGGCACAACAACCCCACAAAGAACAAGCCACAACTTTGAATCTCCCTCTCTCACCCTTTTGGTATGTTATTTTTGTACAAAATTCACAAGTGTCTTTTTACCACATATACAATGTGTAAAATCATTACAAACCATAAAATCATGTGGTAAAAATGTGTTTGATAATACTTAGTAGAGACTGTTAGCTAGATCACATGTGTTTCTTTACCTAATACTGTGATGTTGAAGCCAGATAAAACTAGCATTACTTAATGGAGAATGGTGGTTAAATTGAAACAATTTGATGTGAAAAATGTCAGATTTTGTGGCTGTGCATGTCATGTGTGAAAATAAAAAGGAGATACATGATCTCAGTGATTTTACTCTTGCAATGTACTGTCTCTCCTGGCTCTCCCTTTCTATCTGTTTGTGCTGTTGCAGCAGTGTGAATCTGTTACAGCTTAGATGCCCTGTACACGACACAGAAAAATAAATCCCATTCAACTTGCGGTACCAGACAACAATTATGCCACTTTACAGCCCACAAAAAAAATTAAAAAAAAAAGATTATTTTTTGCCCTTCTCTCTCTGTCTTTCTCTGTCATACCCTCTCTCTCTATCTCTGTTTCTCTCTCTAACTGCATTCTCCTCCTAAGACTTGTGCTTCAATATTAGTCAGCTTGAATTGAATTTCCCTTCGGCTGGGGTGGAACCATCAATCAAAAGAATATAAAGTGTCCCTTGTTTTTGTGGGTTTGTTTACATGTACATACATATATATACTATGTGTATATTTATGGTGATGATTTTGAATTGGGGTGTTTGGTGGAGGTGGTAATAAACCTGATAGTGTGTTGTGTCTGTCGGCGCAAGGTCACTTTCTGTCGGCATTGTCTGTATCCACTATCCAACGATGATACACTTCTGAGAGAGAGAAAGAAAGAGTATTTTTTATTTTATCATAATAAAATTAATAAAAGTACACCGAGATAGAGAGGTTTTACTTCTGGGTTTTCATTGCTTACAGAGTGGCACTACCTTTCAGGAAGCATATTCATACCAGTCCTTGACCTTGTCTTTGGAGCCAACTGAGACTTCAAGTGTTGCTCCTGATCTGAAGGGGTTTTCTGATTTTGATGCCACCAAAACCCCACTTTCCAAATTTGCATCTTGTGTGGAAGCCTTGAAAATCTTGGTTTTATTGTCAGATTTGTGTTCAGGGTGGATAATTGGTTCATATAAGGGAAGGTGAAGGGGGTTTGTGGGTCAATCTTGATTTCCGTGAGTGGCATTGGAAGCTCCTTCAAAGTGTCATTGGTAAATGAAGCTCAGGCTTTCTGAGATCCTGCCTCATTATTTATCTCGTGATATAGGCCTGGAGATTTCACAAAAAGTAACCACTTTATTCTCTATGTTCTTCCTTCCATTCTACTCTGCTTTTATTTACTTGTTCATTTGTCTTTTTAGGCAAGATCCAATTTTATCAGCCTGCATGACATTTATTAGAACATACATGCATTTTACTGGGTTTCATCAAATTCTTCCAATTTTTGCCGGTGATGTTAGCTTACCATCATTTATCAATTTTAGGTCTTGCATTATCATCATATTCAATTTTATTCAGTTCTTCTGCTTGCATTCTTCACTGCATGCCTTCTTCATTGAGTTAGAACTCTTGGTCACTTACGGTTCTTTAGTTTTTGGATTCTCAACTGCATCTATCTCCTATATTTTGAAGTACATTATTCTGATCTTTTTCTATTCTCAGGACTCCAGGTTTAATGTATAATAATAGTTCATATAAATTTGAACAGCATAAGTGAAGGGATTCCCACACCAG


Gene Sequence:
>Vu_20030(-)
ATGTCAAGTACTCTTGCAGCAATATTTGGAGGAGCTGCAGGAGCCGTGGCATTGGTAGGGATTGCTATACTTATATGGTTTTGTTTGTCTCGCCAGAGGAATGCTTCTAGGACTTCAGAGACAGGTTCCTCTGATCCTTCACAAGGTAAAATCTTACATGCATTTGTTAGATATACATATACACATATATACTCTGATGAATAATTTTCCTAAACTGATGCAAATGAATTCCATTTCATGCAGTTGGAAGACATGGTGCAATCGAGTTGCCTATACGAGACACTAGACGTTTTGAGATGGAAGAACTATCTCTGGCAACAAAAAGTTTCAGTGACAAAAATTTGATTGGAGAAGGGAAATTTGGGGAGGTTTACAAGGGTTTACTTCAAGATGGGATGCTTGTAGCCATCAAAAAACGTCGTGGACTCGCCAGTCAGGAATTTGTGGATGAGGTAATACTCATCAGTTTCAAGCTCTAAAATTCGATTGCATGAGATTCCATGAGTTTGGAATTTGATTAGTCAACAAAATTGCTTTCCTTGATCTGCTTCTTATAATTTGGAAAGGATGCCGTCTTTCTTTTCATGTCTTACTAGTCCTTCTTCTCACCCTTTTCTGTTTCTGCTTCAGAATTTGGAGTACAGTTATATAGTAAACTCCACTTAGCTTCACATATCATTTGATTCAGAAATATGAATCTTTCTTTTCCCATTAGTTCACACTCTAATGTGTGACAACCGTGTCTGATAAAAATATTTACATGTGAGAATAATCTGTATTTCTCTCTCAATTCCTTTAGTGTGACAGACTTTACGTTGAAAATTTACTAGTCAGACTTTTGTGAGCATAAACTGTACCACAGTCTTTGACATTTTCACTTCATAATTCTTAGGCAATGTTCAATTGCATACACTATATAGTCTTGACTAAATGTTTCCCTTACGGTTCATTCTCTTGGTTTGATCTAACATGACTTTGCTTTTCTGTAGGTACGTTATCTCTCATCCATTCACCACCGGAATCTCGTCACTCTTTTAGGCTACTGTCAGGAGAACAATCTTCAGTTTCTTATATATGAATATGTGCCTAATGGAAGCGTCTCCAGTCACTTGTATGGTAAATTTCTGTATATCTGCAAAGCTTAATTAATAATTTTATCTCTAAATAGATTCATAGTTGTACTGAAATACACTGATGGTTCTGTTATCATGTGTTTTATGCTTTTCTGCATGCATGCAAAACTTAACTTGATTTCTCTACCATTCATGAAATCTCTTACATCTTGTTTCGGCTAAATGAATCCTTTCTTGAAGCTCATGATGGTAACTTTGATTTTCCTCTGCAGGCCGTGGTCAACAATCGCAACAGAAGCTAGAATTCAAGCTTAGGCTTTCAATAGCTCAAGGTGCAGCTAAAGGTGATCCTTTGCAAAATCAGTGAGCATTTGTGGCTTTCCTGGTATCAGTTTTCTTCTCTTTTAGATAAAATACCCAAGTATCTTAATGGATCCCACAATTTGTTTTTGTAAGCCATCCTAAAACTTTGAGTTATTTGGCAGCACCTTCTGTATGCAGAAAGCCATGAGCAGCAACTTGTTCCTGATTTTCAAAAGCTCATTCATACTATTTTGTGCAGGTTTGGCTCATCTTCACTCTCTGAGTCCCCGTTTGGTGCATAAGAATTTCAAAACCGCTAATGTTCTTGTGGATGAAAACTTCATTGCTAAGGTGGCAGATGCTGGACTCCGCAACTTTCTGGGGAGAGTTGACACTGCAGGCTCCTCTTCTCAAGTGGCAACAGATGAAATATTCCTTGCATCAGAGTAATATATATCTCTATATCTCTATATCTCATGAATCACTTTTGCTCTTCTGGTTTTCATGCACATCATCATGCCTTGCAGGGTGAGAGAGTTCAGACGATTTTCTGAAAAGAGCGATGTATACAGCTTTGGAGTATTTTTGCTGGAATTGTTAAGTGGGAAAGAAGCAACAGCATCACCATTTCCAGACTCTAATCAGAATCTGGTTGAATGGGTAAAGTTTAACTTATATGTACTATCACTATAGAGGCTTTTCACACAAACAAACTAATCAAAAACCAATGTTTGCAACATCTGACTTTTAAGTCAGTTATGGTAAGAATCAACACTATAATCACACCTCACAATGTAAAAATCCTTTCACCACATGAATACATATACCACTTAGAATTGTGATCCATAAGTTAGAATTTGCATGTGTGATATTCTTCTATTTTCTAACATTATACATGCAAGGTGACATGACACAACTTGGTGTTGAAAGTGTGTCATAGCTAGTTTTCATGATGTGGTTTGGTGTATTCTTACGAATTTGGATTCTCTGTTGTGTTTTTGGTGTTATTTCTATGTTAAGCCTTCAAAGTATACTGATATAGGTATATTAAAAAAATTTAAATATAATTTAAAACATCAATATCAATGTATGAGTGTATTTTGAAGGTTTAACAGAGAGACAACAGCAAAGAATCCAGCAGAGAGAACCTGGACTCGTAATCTTACAGGTGAAGTCAATGAGCTGCTTATGTAATTGATTTTTGGTGTTCTTTTGTTCTGCATAATAAAGGTGGTAAGCAATGAAGAGCGTGACATGATGTCTTATGATCGGAGATTGGAGAGTAGTTTTACAGCTGAAGGAATGGAAGATTACATCATGCTCATGATCAGATGCTTAGACCCTTCAAGTGAGAGAAGACCTGCAATGAGCTATGTGAAAACGGAACTTGATAGGATCATAGAGAAGGAAATGAAATTGACAACAATCATGGGAGAAGGAACCCCATATGTGGCTCTTGGAAGCCAGTTATTCAAATCAACAACATGAAAGAAAAGGTCTTAAAAATTGTTTCTTACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATTTGTTATATTTGTGCATTACTTCTTTGCTCTCTTACTTTGCTTTCCCTCAGTGCATACCAGAAAATAGGGTCAGTTGCTTCCTAAGTGTATAAAGAGCACCTGTATCTCCCTTTATCCTTCTCTTTTTCTTTTCTTTTTCATGGGCCAGTCAGTGA