Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20187	LG5	19342504	19344522	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	adventitious root development, adventitious root development, adventitious root development, adventitious root development
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/T	19342575	synonymous_variant	p.Ser24Ser
A/C	19342841	missense_variant	p.Gln113Pro
T/A	19342983	synonymous_variant	p.Ser160Ser
C/G	19343157	synonymous_variant	p.Thr218Thr
T/A	19343217	intron_variant
T/C	19343374	downstream_gene_variant
C/T	19343375	downstream_gene_variant
T/A	19343489	downstream_gene_variant
A/T	19343493	downstream_gene_variant
T/G	19343740	downstream_gene_variant
C/T	19343745	downstream_gene_variant
T/A	19343951	downstream_gene_variant
C/T	19343952	downstream_gene_variant
T/C	19343971	downstream_gene_variant
T/C	19344022	downstream_gene_variant
C/A	19344030	downstream_gene_variant
A/G	19344062	downstream_gene_variant
G/A	19344063	downstream_gene_variant
C/T	19344257	synonymous_variant	p.Leu228Leu
C/G	19344378	missense_variant	p.Arg269Gly
T/A	19344502	missense_variant	p.Phe310Tyr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20187.1

MEDERQKEAKSPRHGPEKSEAVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMMQQAAATAAAINQPQPQPQPQPQPQPQPQPQPQPQLQPHGLVAGGAIQHDHHHNQVNLVASESATSNIGLGSCVSYDLLGGSSSSCSGGGQQGMGGFFSGSSPQMGFPEIIDHTPPSPSVLFPPFDPNLTFQTGYGGTDISAFITVFINGIATELPKGPIDMKTVFGEDVMLVHSSGVPILANDFGFLMQNLQHGESYFLVGRIFKSIASFPNHVLPLSISCLFFYFE*

CDS Sequence:
>Vu_20187.1

Promoter Sequence:
>Vu_20187::LG5:19340504-19342504(+)

CATAAAAAAGGGAACACAGGTGTGTATTCACACGTATGTTTTCACTAATATATCCAGAATGTATCTTTTTGTGTTCATATTTGTTTTTCAATTTTATCTTTTAAATAAAATTTTTTCCTTTAAATTTTTTTTAAGCATTTTAAAATTATATTATCAAACATTTTATAATAATAAAAAAAGGCTTTAAAAATATAGAGATTCAACTTTCATAATTCTTATCATATCTATACTTTCTACTTTACTTTTTTTTATAAATAAATTACAAATAGTTAAAAATTACAATATAAAATAATTATAGATATAAATATACTGTAAATATAGAACCTCTAACTGGTGCTGTCAAAATGGGTTGTAACTCTTGGTCTAACCCGGTCTATTACAAGTTTGAACCGGGTTGGGTTTGCAAAAAATATAATTTTTTTATGCGGGTTAGTGTTCAACTCGGCTCACTTAGAACCTGGTTCACCAGGTTGGCTCATCAACCCACCTAATTTAATTTAATTATTTATTATTTTGTATTTCAATATTATATTAGTTAGGATATTTTTTATTATATTGTAGATAGTGAAAGAAGAAGATGTTTCAACAGAGAAAAATATTATAGATTTATCTATTCAAAACTCTAATATTATAATTGGACAAGTGATACAAAAATTATCAATATTAAAAACATATTTGTTTGTCTTTTGTACATGTTTTGGATGAGTGTATGATACATTTTATTTATTTATTTTGAATTGCCTTTGAAGTTTAACATCATTTTACTATGAAATTTATTTAAATTTGAATTAAAAAAATTGTAACTTTTTTTTTATTTCAAAAAAACTTATAATTAAATGAGTTTGTGAGTCAACCCGTTTAACCCACCAACCTGTGGTGGGTCGGACCAAATTTAAATTTTTTCAACTCGTTAATAAGTGAGCCGGGTTGGATTAACTTACTAAGTGACCAAAACCGGGTTACCCATTTTGACAGCTCTACCTCTAACCATGAAAAACCTTCAAAAGTGATATCATATATATTTGTTAATTGCTAATTAACTCAAAATGTACTATACTTAATTTTGTTGAAGTTCAAAATTTTGTTTTAAATGGATTAATTCTACCTTGTGAAGATTCACTGCTCTCTTACTTGCTATCTTGAAAAGATTCTTTGACAAAATTACAAACATTCATTTGACATTGATGGTAGGGATATTATAAAAAAGTAAACTTATGTATTTGTAAAGAAAAGAGTAAAGGACAGTAAAGGATAGTTCTAAATGAGTGTAAAAATTAATGTCCTTGCTATCTAGAAGGAGTTCATGATTTAACCAACAGTTATTTGACTGTGATTGATAAGCATAAAAAAATATAGTATCCGCATCTTTAAAATGTCTTGCTAAGTTGTCATTATTATTAGAAGGGTATTTATGTAGGACTATAATAAATAGATTGAAGGATCCTATAAAGGTAATTTCATCCCTTAGCATTCACCACCTCAACTCTTATATAAATTAAGACCCTGTTTGTTTTATACTGGGAATCAATTTCACACACACACTGTACACACTCTAATCCCACAACATATTACAATTGGACACACATTCCCATCACCAGCATGTTTGGTTTCGAGGTTAAACGCATGTTTGACGTCAATTTCTGAATATAAACAAACCTTATTAATTATATATAGCTTCTGTATTTAATTTTTTGACCAATTTAATACATTTTCTTGCGTTACAAACGCGTGTACCAAGTCCAAATAAACGCTAGTTCAACCAGTCAAAATTAACTCTAAGCAATCAAACATTAAAAGAAATGGAATAAATATTATTTCTAGCATTAATTTTCCATAAAAAAAAAATGAGTGCATTAAAGGAGTTCACTGTGTTCAGCATATGATTTATTTATATATATGTATATACATATACACAGAGATATATGTGTAATAGTATTATTATTTTACCTAGGTTTCAGGTTCGTGAATCATTTTGATATTTGTTGGTGTGTGCATTGGAA

Gene Sequence:

>Vu_20187(+)

ATGGAAGATGAGAGGCAGAAAGAGGCAAAGAGTCCAAGGCATGGCCCTGAGAAGAGTGAAGCGGTTCGGTCGAGGTGGACTCCCAAGCCGGAACAAATTCTCATACTGGAATCCATCTTCAACAGTGGCATGGTGAACCCTCCCAAAGATGAAACCGTAAGAATAAGGAAGCTGCTTGAGAAATTCGGTGCTGTGGGTGATGCCAACGTCTTCTACTGGTTCCAGAACCGCCGCTCCAGATCCCGCCGCCGCCAGCGCCAGATGATGCAGCAGGCAGCCGCCACCGCTGCTGCGATTAACCAGCCTCAGCCACAGCCTCAGCCACAGCCACAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCAGCTTCAGCCTCATGGTCTTGTTGCTGGTGGTGCAATTCAGCATGATCATCATCATAATCAGGTTAACCTTGTTGCAAGTGAAAGTGCTACTTCAAACATTGGTCTTGGTTCTTGTGTTTCTTATGATCTCCTAGGTGGTTCCTCTTCATCGTGTAGTGGTGGTGGACAACAAGGCATGGGTGGTTTCTTTTCTGGTTCTTCTCCTCAAATGGGTTTTCCTGAAATAATTGATCACACCCCACCTTCCCCATCAGTTTTGTTCCCTCCTTTTGATCCCAATTTGACCTTCCAGACTGGTAATTAAATTGCATGCTTCTATATTATTACTCAATTTTTTAGAGTTTTTTTTTATATATATGTATATTTTTTCACAGAAAATCTTGTTTGGATTAATTCTCATTCTTGTGTGTTTGTGATTCAGAATTTTTAGATTTTAAAAAATTACATTTTTTTTTCTGGGAGAATGTTAAATTCCATTAGGGATTCGTTTCCAGAAATTAACTCTTTTTTTAAGTGTAACAGGAGGTTTAAAAGGGGTGCTGTGAAATAGAAGTTATGATTAATTGAAGTGTTTATTACCTTAACAGTATATTTTAATGAGTTTTGTTTTTAAAAGTTCTTATTTTTCGGCTGACTGGTTTCGGGTGGGCTACAGAATAAAGTAGCAACCTTTTCCCTGATTTGACAGTTCTGTGTTTGAATTGCATGAAAGTTGTACTTTCCGGAAAAACATGAGGCTACTTTCTGGTTGCAGTTTCTGCTCCTTCCTTTTTATTCTCTCACTTCTTTTTCTGGTTTCTTCAAAACTTCTGTACAAAGATTTCCAAACCCTAGATTGTTGTTTTTTACCCTCATTTTCATGTTTTTTTGTTTCTTTTCTCCTTTTCTGTAATTTGATTTCTTCTTCCCTGTATATGCATCTCTCACCCCATGTTACTGATTCAAAGGAATCTACTATGTTCATCATATTCATAAGAAATACATTTGTATTCACTCTTTTCAATTTATTTTTCTTTTATCTGTTTTCCTTTACATCATTTATATTATCTCATTTATTTCTCTCCTAATTTTTTTCTTTATCTTTTTCTATTACTAACTATATGGTAATAAGCCTAATCTTTTATATAATTTATAATATTGTGTTTTGACTTTTTTTTTCACCTTAATATTTATAATTAGCCTAAAATTTGAGGAATGTATATATTCAGGTTCAGAGCATTTTTGCTTAAACATTTGTAGGATCCTCTTGCTTTGTTTTACCATCTGAAAATTAAAATTTTAAATCAATCATACTATATATATCCTTACGTGAGAACTGGCTGAGGTTCTAATATTGATAACCATTGTTTTATTTTGTGGGGTAGGATATGGAGGCACTGATATCTCAGCATTCATCACAGTTTTCATCAATGGGATTGCAACAGAACTTCCAAAGGGACCAATAGACATGAAGACTGTGTTTGGAGAAGATGTTATGCTAGTTCATTCCTCTGGAGTGCCTATTCTCGCCAATGATTTCGGATTCTTGATGCAGAACCTTCAGCATGGAGAAAGTTACTTTCTGGTTGGCAGAATCTTCAAATCAATTGCTTCTTTTCCAAATCATGTGTTGCCACTTTCAATTTCTTGTTTATTCTTTTACTTTGAATAA