Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20201 LG5 19552250 19553609 PREDICTED: myb-related protein 306
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to salt, response to abscisic acid, negative regulation of response to water deprivation, negative regulation of response to water deprivation, response to water deprivation, negative regulation of response to water deprivation, response to auxin, response to auxin, stomatal movement, response to auxin, response to light stimulus, response to auxin, response to sucrose, response to auxin, response to auxin, response to light stimulus, response to abscisic acid, response to cold, response to water deprivation, response to absence of light, response to blue light, response to abscisic acid, response to abscisic acid, response to cold, response to abscisic acid, response to abscisic acid, response to UV, response to water deprivation
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 19552506 synonymous_variant p.Phe204Phe
T/G 19552721 missense_variant p.Lys133Gln
G/A 19552740 synonymous_variant p.Leu126Leu
A/T 19552745 missense_variant p.Cys125Ser
T/A 19552781 missense_variant p.Ile113Phe
A/T 19553142 intron_variant
T/C 19553221 intron_variant
T/C 19553385 intron_variant
G/A 19553468 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20201.1
MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAAIDPHSASDSATSGQYLPKSFNDRRSLDMSSSNNNHVSSVRLSQSQSSTYASSTENISRLLEGWMRSSPKPLKRSQDQELQSIDDDNNNNSNNFETTNKLMKCASLPALNLHHQHKRNKDEQEGGVDMASHEEFDSILSFENLNNAAWDKSTCDSMPDKSPEAAAESSHEVSQEERIRQKSENNSAPPLSFLEKWLLDESVGQVEEMMELSPMF*


CDS Sequence:
>Vu_20201.1
ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCATACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGCCATAGCTTCGTATCTTCCCCAAAGAACAGATAATGATATCAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTTAAGAAATTTCAAGCTGCCATAGATCCCCACTCAGCATCAGACTCAGCCACCAGTGGTCAGTATCTACCAAAGAGCTTTAACGACAGAAGAAGTTTAGACATGAGCAGCAGCAACAATAACCATGTCTCATCCGTTAGGCTTAGTCAGTCTCAGTCCTCCACATATGCCTCAAGCACTGAGAACATCTCAAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGCCACTCAAGAGATCCCAAGATCAAGAGCTCCAAAGCATTGATGATGATAACAACAACAACAGCAACAACTTTGAGACCACTAATAAACTGATGAAGTGTGCATCGCTGCCTGCTTTGAACCTTCACCATCAGCACAAAAGAAACAAAGATGAGCAAGAGGGTGGCGTAGATATGGCTTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACATGCGATTCCATGCCTGATAAGAGTCCTGAAGCTGCTGCCGAATCTTCTCACGAAGTCTCTCAAGAAGAGAGGATCAGGCAAAAATCTGAGAACAACAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTAGATGAAAGCGTTGGTCAAGTGGAGGAGATGATGGAGTTATCTCCAATGTTCTAA


Promoter Sequence:
>Vu_20201::LG5:19553609-19555609(-)
ATTATGTAGTGTATATTGGATCAACAAATATTTCTAGTTGTAAATGATAACACAATAACTGAAGAACTTAAAGCTTTTCACAATCGTACCATCGATCATCTAACTAAACCAGAATATGATAATTATGATATTCAATCACAAATTCGCACACGATTTAGATTACAATCTCACCCTTCCACTCTCATAAAGTGAATAAAAGATGACTAATAAAAATGTCACGTTATGCCATTAGTTTTCACATATATTTTACTAACATATACTTTAGTATTATTGTCTTAAATTTCCCAATACATTCCATTTACATAAATAATTTGATTAATTAATTAAATTAACTATAATTATAAAAATAACTATTAAACATAACTTTTTTTTTGTTAGAAATGTTATTTTGATAAATACATATTTTTTACATGTGATATTACTAAAATTATAAAAGTTTATTATTTTATGGTCATTTTACCTTTCTAATACGTCAATCAAATGAACGTAAACAAGTGTGTCTTTCTTATTATTTTCTTCTTTTATGATCATATATTGAAGCATGTCATACTTTAGAGAGTCTCTCCCTACGTTGTACTACTTACACAGTAGAATACAATTTATCTTGAAGTGTTGTCTTAGCATAATGTCGATGAAAGTCGAGCTTTGAGCAGTTGCTTTGAAGATCGTTATCCCTTTTACACAGAAGAGGGAGTAATTAAGATCAATGGAAAGTGACACAACCTAAGTACTAACACACCACTTCAGTACATCCCACAGCTCGGACACATGCTTAAGAGAACGATCTCGCTGCTCCTCATAAAGAAGCAAGCACCCACACACTCTCTCTCTCATACCATAACATAAAAAACAAGCTCAATTCTCATCAAAATTCAACCTTTTTTTTTTCCATCATCTTTCATTCTTTTACATTCTGTTGCTCTAAGTACTTCCATCACTCCAAAAAGGCCAAAAAGATAACATAATAGGCTCGGATTTGACACCACAGAAAAGTGAAAGCATTACTCCTTATGGAACCATATACAACATAGTTCCATGTCTCCTTCATATGTATATGACAATTTCATTTTTATATATATAATATGATAATGGATATTGAGGGTTGAATTCAACATCTTTACAAGCTAACAAGTACAAATTAAATATTTATCCTGCACAATAACAGACAAGTAACCACAAATCATTATTCATTTGTTCCAGATTCTGTAAACATTCCCCAAAAGCCAGAAGCAACCTTACCAAAATCTCTAACCCCTCTGGGGATCCTTACGGCACTTTCTGCTCCTCTCTGTGAAAATTTCATTTATTGTTAGCTGTCCGCTAAATTTTGGCAGTACCACACATTGAATTGTGCAGAGGGTAATGAAAATGAGAAATAAAATGAAAATGAAAATGAAAAACCAAGTATTCGTTGGAAAATAATGAATGCCACAATTAAGTTTGCTTTGAATTTTACGTTTGGTTAGGGACTTAAATTTTAATAAATCAGAAGAATAGATTAGAAGAAAAATGTACACTTCACTTGGAACCTCAATTTATTAGATGTCGACAAAAGTTGTATATGTGAAAAAGGCAACATGGTGATTGATTAGTGTGCTAACGACATGAAGGGTCTGAAGCAAACAGTTTGAAGGGAAATAAAAGAGAAGGGTAAGAAATATTAAATTAGATTAAGTTTTGGTGAGAAGGTGCCACGTGACAAAGAAAAGAAAGGAAAAAGAGAGAAAATTGTTAAACTCCTCAGTGGCTGACTTTGGTTTCCACATTGACTGCATAATTATAAAGGTAGTAAAAGAGTTAGGTGACTTAGCTTGGTAGATGAAGGATGGTAAATCTCTTAAGTTTTCCTTTCATCAAAGTCATCGAGTATATAAACCACTCACATGCATTGGTACTATTTGCAAGCTCTCTTGGGAAGTTTGGCCTAGCTAGAAAAGGAGATCAGTGCGTATTCAGTTTTTGGGGAGAAAGAAAGAAGGTGGATTCAACCAAAGCAACCC


Gene Sequence:
>Vu_20201(-)
ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAGGAGGATATCATCCTTGTCTCATACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGTAATTAACTACCTAATTTCAACATCTCCTACTATTATATCTTCAAATCCTTTTCCTGTTTTCTTTACTGTATGTATATCTATTACTATGAAACTGCCTTCTTCTTCTTCTTCTTCTTCTTCTTGAATCAAACTGATCATATATAGTTCAAACCTTTTCTTGAAAAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTCCCCATGAAGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAGTAATTCTCGGTCAAATATCATAATTTTCTCTTCTCATCAACGAAAAGAGAATCAATATACATATAGCATGAAGAACTAAACATCAAAATTCAGATGCTTTTTACTTATTTGCTTATGATTTTAGCATATATATGTATATGCATATTATATGCCTGAATCTGTGAAGTTGTTGATTGTTGAGCAGATGGGCAGCCATAGCTTCGTATCTTCCCCAAAGAACAGATAATGATATCAAGAATTATTGGAACACCCATCTAAAGAAGAAGCTTAAGAAATTTCAAGCTGCCATAGATCCCCACTCAGCATCAGACTCAGCCACCAGTGGTCAGTATCTACCAAAGAGCTTTAACGACAGAAGAAGTTTAGACATGAGCAGCAGCAACAATAACCATGTCTCATCCGTTAGGCTTAGTCAGTCTCAGTCCTCCACATATGCCTCAAGCACTGAGAACATCTCAAGACTCTTGGAAGGTTGGATGAGATCTTCCCCAAAGCCACTCAAGAGATCCCAAGATCAAGAGCTCCAAAGCATTGATGATGATAACAACAACAACAGCAACAACTTTGAGACCACTAATAAACTGATGAAGTGTGCATCGCTGCCTGCTTTGAACCTTCACCATCAGCACAAAAGAAACAAAGATGAGCAAGAGGGTGGCGTAGATATGGCTTCTCATGAAGAGTTTGATTCTATTTTGTCCTTTGAGAACCTAAACAATGCTGCTTGGGACAAGTCCACATGCGATTCCATGCCTGATAAGAGTCCTGAAGCTGCTGCCGAATCTTCTCACGAAGTCTCTCAAGAAGAGAGGATCAGGCAAAAATCTGAGAACAACAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGCTCTTAGATGAAAGCGTTGGTCAAGTGGAGGAGATGATGGAGTTATCTCCAATGTTCTAA