Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20334 LG5 21497125 21499010 PREDICTED: transcription factor ORG2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, cellular response to iron ion starvation, regulation of transcription by RNA polymerase II, cellular response to iron ion starvation, regulation of transcription by RNA polymerase II, cellular response to iron ion starvation, cellular response to iron ion starvation, cellular response to iron ion starvation, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, iron ion homeostasis
Cellular Component   is active in   RNA polymerase II transcription regulator complex
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, protein dimerization activity, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II transcription regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
T/G 21497548 intron_variant
T/C 21497557 intron_variant
A/G 21497657 intron_variant
T/C 21497686 intron_variant
A/G 21497722 intron_variant
G/A 21497812 intron_variant
G/A 21497896 intron_variant
T/C 21497921 intron_variant
G/A 21498003 intron_variant
C/A 21498016 intron_variant
C/T 21498070 intron_variant
A/T 21498156 intron_variant
G/A 21498189 intron_variant
G/T 21498227 intron_variant
A/G 21498363 synonymous_variant p.Val124Val
A/C 21498741 intron_variant
A/C 21498980 missense_variant p.Leu239Phe
C/A 21498982 missense_variant p.Pro240Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20334.1
MVALFSPIFSPKGWLLEEEPLGYNNSHNLFYKDDASSEYSFPYHFYSPQTQIELEERSIAPSSDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPMADQTKKMSIPATVSRVLKYIPELQQQVQALTKRKEELLGRISRQLQGDAVNKESQRKISHHNSSFVVSTTRLNECEAVVHISCHETHKAPLSEILQCLENDGLFLLDASSSETFGGRFFYNLHFQVEKTNRLEPEILTEKLLPIYEKQRIF*


CDS Sequence:
>Vu_20334.1
ATGGTCGCATTGTTCTCTCCTATCTTCTCACCCAAAGGCTGGCTCTTAGAGGAGGAGCCATTGGGCTATAATAATAGCCATAACCTCTTCTACAAAGATGATGCGTCTTCTGAGTACTCCTTTCCCTATCACTTTTATTCACCACAGACACAGATTGAGCTTGAAGAAAGGTCTATTGCACCATCCTCTGACCCTGCCATGGTCAAGAAACTTAGCCACAATGCTAGCGAACGGGATCGCCGCAAGAAGGTCAACAACTTGGTTTCTTCACTTCGCTCACTTCTTCCAATGGCAGATCAAACGAAAAAAATGAGCATCCCTGCAACAGTTTCTAGAGTCTTGAAATACATACCTGAACTACAACAGCAAGTACAAGCACTAACAAAAAGAAAAGAGGAGCTTCTAGGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGAATCTCAAAGGAAAATTTCCCACCACAACTCTTCTTTTGTTGTCTCAACAACTAGGCTTAACGAATGTGAAGCTGTAGTTCACATTTCATGTCATGAGACCCACAAGGCTCCACTATCAGAGATCCTGCAGTGTTTAGAAAATGATGGTCTTTTTCTGCTAGATGCTTCTTCCTCAGAAACCTTTGGAGGAAGGTTCTTCTACAATTTGCATTTTCAGGTGGAGAAAACTAATAGATTAGAGCCCGAGATATTAACAGAGAAGCTTTTACCAATATATGAGAAGCAAAGGATTTTCTAA


Promoter Sequence:
>Vu_20334::LG5:21495125-21497125(+)
AACTTTGTATAATGTCAATGATTTTTAGACTTTTACGTCGAATTTGAGGTCGACGTTAAATTAACGTTCAAGATAGAACAATTCGACGTTAACAGTAAAGCAAAATAACGTCGAATTTGGTCAATATTCGACGTTAACAGTAAAGCAAAATAACGTCGAATTTGGTCAATATTTGACGTTAGTCAATTTTTTTAATTAATTGTGATCCTTTTTTACAACTCAACAAGTTTTAATTTTTGGTATTTTATAAAACATAAAGTATAATGTGTAGTGTAGTTTCAACAACAAACAACAGAAACAAACAATAATAACAAACAACAAACAAGTTCAATCAAACAACAAACATGTTCAACCAAACAATAACAATAAATAAGTTTAAAAAAACAACCAACAAGTTCAACAAATAAAGTGATTGCCACCACTGAGAGAGAAAGCAAGAACATGAAAATAATCGGTCAAAACAAACGAAAATCATACCTAAAGTAGTTAATTAACATGCATTTGTAACAAATGAAAGAAAGATTACATGTGATGGTCGTCAAACTTCGATCCATAAAAGTTTGAGCAGAGAAGAAGGTACCGCGAGTTAAGATAAAGTGAATAAATTTTCAATCTCCCGCTCAAATTTTTATTGAATTCACTAACATTTTAACGTCTAACGCGGGGACATTCGACATTTTATATCCTTTTGACGTCTAATTCTAGGGAATTAAACGTGATACGTAAATACATTTTCACCTTCGCGTCAAACATTTTAGCAAAATTTATCCAATATAACAAATTGACATTGAATTACAACTCTAAACAACGTCTAATAATATCATTTATTTACAAAAATGCCACCGGTCATTTTTAAGGTTGGATATTCAGTGGTTGGACGTTGAACGCGTGACGTTATACGCTATTTTTGCACTAGTGATTAAGTTAAGTATGTTTGAATAGATTTATTTTAAATTTGTACTTATATTTTTGGATTTGAAATCTAATTTATTTAATTAAATTTGATTCAAATTTAGATTGAATAATTCTTTAGATATTGAAAATTCAAAATCACGGTATATCTAAGTTGGGTCATGACCGTTGAAGATCAAGTCGAGTTAAGTTAATCCAGATCAAAAATCGAGTTAAGTTAATTCACTCCAAAAGGTTATACCTGAGTTTGTTTGAGTCGAAAGTTAACCTGAATCAATACCAAACAATGTTATGACAAATTAGTTTAGGTCAAGATGAGCCGATCCAAATCAAAGATTTAATGGAGTTTACACATATAAAAATTTAAGTTGAGTCTGAGAAAAAACTGAAACATGTTTGTTTAAGTTAAAAGTCTATAGATTTTAATCCATATTGAAAATCAAATTCCGTCTAAATTAAAAGATTGAGTTTGACTCGACTTAAACTAAAAACATAAAATCGAGGCTAAAGAAAGAACCAAATCAACTCATCGAAAATCAAATTAACCTTTTAAAAGTCAAATTGTATCGGGTAAATAAAAATAGTAAAAGTGAGTGATTCCACGTATAAAGTAAAAAAGAGTTGAGTCAAGTACTTTCAAAAGTAAAAAAGAAGGAGAAAACATAGATGCCACGTAGACAATTAAAGAAGTAGAGAAATGCACGATGGTTGGGTAGTCATCCACGCTCTCCCACCCTCTCACCCTCTCTGCTACATGCACAACACATACAAGCCACATTTCAAACACGCGTTTACATGTGCTCCCATAAACTATCATCTCCCAACATTGTTAATGTGTTTGGTTTAATTTTTAAACATCTCAGCTCATACTTGATCAATTAACTTACATTTAAGTAATCCAAGTGACGAGGAGAAAATGAGAATATTTTAATTATCTTCTGCAGCCACTTATTTTTTATTCAATTATATTAAAATGCTCGATTACGTAAAGGATAATGACTGCTGCATATATATTCAGAAGTCGAGATCATGATTTCATTGTCTCAGAAACTTGTTAACTGCTCCCAACAAATCATAATCATTTACCA


Gene Sequence:
>Vu_20334(+)
ATGGTCGCATTGTTCTCTCCTATCTTCTCACCCAAAGGCTGGCTCTTAGAGGAGGAGCCATTGGGCTATAATAATAGCCATAACCTCTTCTACAAAGATGATGCGTCTTCTGAGTACTCCTTTCCCTATCACTTTTATTCACCACAGACACAGATTGAGCTTGAAGAAAGGTCTATTGCACCATCCTCTGACCCTGCCATGGTCAAGAAACTTAGCCACAATGCTAGCGAACGGGATCGCCGCAAGAAGGTCAACAACTTGGTTTCTTCACTTCGCTCACTTCTTCCAATGGCAGATCAAACGGTACTTTATATATATATATCCCTTCTCTCTCACTTTACCACAATACTATAAACTCGCTACTGTTTTCTTTCAATCAAATTTAATTTAAACTTTGACTTTTGCTACTGCACCATAACATTTTAGTTTCTTTATATGGAATATGAGAGCAAAATTTCAGTTCTGATTAAGTCGAAACCAAAATATCCATGCAACTGTATCTGTCTGTACTCTGATCTTCAAATTAGCAGACATATGCTAATCTTGTTGGAAGTAATTTCATGAAATTCATATTACTCTTATCCATATATAGCTTCCATGAGGGTTCCTGAGATTTGTCAACTGGGATGTGTTCCCTTAGATTTCCTTTATTTTATGGTTCACAGCATGTATTTTCTATGCATTTAGGCTTATTTTTGGATCATATATTCAAATTAACTTTTCAGATAACGTTTTTTTTGAGTGATTTGTGCAGATGAAAGATAATTAGGGGTTAGTTTATGTAAAGCCTCTTTATTTGTTAGTTTTCATCAAAATAAGAACTTTTATGCAGTAAAACAAACGCGATAAAATGCAGAAATATTCCGCAGTGTGAAACTGTGTGATTCCTATCAACATCTGCAAAAATTGACCGAATGGATGATGTAATAATTTCTAATAAAACAACTATTTCTAACAATGACGTGCTAGGCCTTACTTGGTTCACATTTAATTAATTCTTTAGACAAATATGTGAAAAGTAGACAGGAATTAGATCAGCATTATTACATAAACAAACAAATAAAGCAGCTGAAATCACAAAATCAATAATATCTTAACAAAAGCAAATGAAACTTCCCCTAAGTTGTAATGTAATAAATAGAGATCTCATAATTCCATATTAATTTGCAGAAAAAAATGAGCATCCCTGCAACAGTTTCTAGAGTCTTGAAATACATACCTGAACTACAACAGCAAGTACAAGCACTAACAAAAAGAAAAGAGGAGCTTCTAGGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGAATCTCAAAGGAAAATTTCCCACCACAACTCTTCTTTTGTTGTCTCAACAACTAGGCTTAACGAATGTGAAGCTGTAGTTCACATTTCATGTCATGAGACCCACAAGGCTCCACTATCAGAGATCCTGCAGTGTTTAGAAAATGATGGTCTTTTTCTGCTAGATGCTTCTTCCTCAGAAACCTTTGGAGGAAGGTTCTTCTACAATTTGCATTTTCAGGTATCTTTCACAATATTCCAATGTATGATAACTTCATTGGTTCAAAGATAATATTAACTATTAGGTTTCTAATTATATCCTTTATTTCATTCTTATCAAGAAAAACAAAATGATGCATGAGTGAATATTAAAGTAGTAAGACAGAAAAAGGACATTTAACAAAACGACAATGCTAATGTTAGTGGTTAATGATTTAAAAATGCACCAAATTAGGTTATAATACTCTATAATTTTGAGAACTGATTAATGAAGTAATGCTGGTGTTTCTGCAGGTGGAGAAAACTAATAGATTAGAGCCCGAGATATTAACAGAGAAGCTTTTACCAATATATGAGAAGCAAAGGATTTTCTAA