Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20399	LG5	22550500	22552470	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	negative regulation of RNA metabolic process, negative regulation of RNA metabolic process, negative regulation of gene expression, negative regulation of RNA metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	zinc ion binding, protein binding

SNP	Position	Effect	Amino acid change
G/A	22550518	synonymous_variant	p.His215His
C/T	22550524	synonymous_variant	p.Glu213Glu
T/A	22550593	synonymous_variant	p.Leu190Leu
A/C	22550847	downstream_gene_variant
A/T	22550855	downstream_gene_variant
T/A	22551140	downstream_gene_variant
G/A	22551340	downstream_gene_variant
A/G	22551460	downstream_gene_variant
A/G	22551504	downstream_gene_variant
T/C	22551505	downstream_gene_variant
C/A	22551748	downstream_gene_variant
T/C	22551854	downstream_gene_variant
G/T	22551859	downstream_gene_variant
T/A	22552182	stop_gained	p.Arg97*
T/A	22552306	synonymous_variant	p.Ser55Ser
G/A	22552307	missense_variant	p.Ser55Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20399.1

MGERCHSDAPLDTISSGSEEHLISHLPKECKIGSISLDENDDDYPVPRPGMIFRSEAEARLYYTKYADQMGFSVKTRTSKRGGEGQVKYLILVCSERSRTGIDESKKQYCTARINLTLRKDGTYQISAVTLGHNHELGSQRITIEMKCIRKLDPEVIDMGRFDLLCKQFNSIAAAAAEFEGTSSFVKDTLCNLKEKLDSWTSLPINSSLVDVEKHNNMIH*

CDS Sequence:
>Vu_20399.1

Promoter Sequence:
>Vu_20399::LG5:22552470-22554470(-)

TATAGAAACCTTGAAATCTTACAGTTTTTCCTCAATTTGGATAAAAGGTTTGATATATTAACTATCACAATGTTGGTTGACAGAGGTTAGCAATTACTTTTGAATGTGGTGAATTTAATGCATATTTAATTCATGAGCGAACAAATAAGACACTAGATATCAAGAGTTGAAGTGAAGAACATCAACAAACAAAAAAAGTTCTTATCAATTTGATTCTTAAATAACTGTTATAACACGCTAATTACAAATAAACCGGTATACACTTTTTTGTTTAAAATATTCTCTTCTCTTACTTTCTTAAATTACATATTATTACTACTCACCTAACTTTTACAAAAAACAAACTGGGAAAATTTAGGTAATATGTCTATCAAAATATACATGTAAGTCCGATGAAAATATACATGTATGATTAGATAAAGTCTTTACAAAACATACTTGTATACCAAACATAAACAATTTTCAATATTTTAGGAATTTGTAGTAAAGCAAAGAAAGATTTCAAAATTCTTTTACAAAAAGTTTTCGAGAATTTATTATAAACTTTAAATTCTCATAAAAATTACTTAATGTTAAGAACGTACAAAAACATAATTTTTTCTGCATAAGAATTTTAAACTGTATAGAAAAACTACCTCCCTTGATCTCAAAATTTCATAAGAAATTATCTTAAAGATTTAAATAAGTAGAAAATATCCTACCAATTTTAAATTAAAAAGACTATCCATTAACATATTTGTGAATTTTAATCCATAAACATTCCAGATTAACTACAGATGAGAAAATTTATACAACAAAGATTAAATATGCTAAAACTAATAATGTTAATTAAGATTGATATATAAAACATAATACAGACATGGGAAGAAGAAAGTTACATTATTATTATTATTATTTAGAGATAAATAAATTTTTAGATAGAGTTTGTACCTTAAAGTACTAATCTCTTCTTCCTATTATATTTGCCTTTATAAAATTAGATGCTTTAACATTATTTTTTTTGTAGAAGAAAAAAGTTTAGTTATATTAATGATAAACTGTAATGATTTAATTTAAAAAAAATTAAAGAATCAAATTTACAGTAAAAAGTTACAAGAGTTAAAATATGTGAAACTATACAAACTAAAAATTCATATAAATCTTTACAAAAAGTCAATTACTATATCTTTATGTGTTTCTTCACCATTAATGAGACTGTTTTTTTATTCTCATTCTATTTCATATTGACCAGACTCCCTTTTTTTCCACTCCTCCATGTTTTTTTGCTGATAAAAAAAAACATTGGATCTCAGAAACAAAAAAAGTCTGAATAGATTAAAACAAAAAAAATGCCCTAAAACTTTAGAAACGGTGCGTCAAAGCCCTTTCCTTCTCCCCCAACAAAAAGACGGTGCTTTCAGAGTTTCAGAGGAAGTGAAGACTAACATTAATTAGGGTAGAGGCCAAACCAGCACCATTTTGAGCTTTGGGTATTTATCAACTTCTCTCTTTTTACTCTTCTTGTCCAAAAGAATTTTCAGTTTCCTTGTCCCTGGAAGAATTTTACACGTCTTGGTAGGGCAAATTCTGTAAATTTTTTAGTTGTTTTTAACTATTTTATGTGATCCTGTATTTGATTCTTGCTTGTAGAATTGTTAATTTGTGTTTTGAATAGCTTCCGCAGCAAAATACTTATGTGTACTGTAGCCCTCATCCTGGTGCTAAGAAGTTATTTTCTAGATCTGAGTGTAATTTAAGTAAACAAGGTTAAAAGTTGTGATCACATTCCCAGTCACAGTTTCATAAAGATTTTGATATTGTAGGAAATTACGGATAAATGTGACCGGTGGTCATCATTGCAGTTTCAGTGACTCTGAAACCCTAGGGGTTGTGGCTGAAATACTAATTGGAGTCTGTTTCTTAAAACCTTGCAGGTAAAAAATGTAATGAATTGTAATTACATGCTTACATTCCTAAATTCCTGGTTTTGAATTTTGACTAGGTTGTTTTTCCTGTAGGAA

Gene Sequence:

>Vu_20399(-)

ATGGGTGAACGATGTCATTCAGATGCTCCGTTAGATACTATTTCCAGTGGGAGTGAGGAACACTTGATCTCTCATTTACCAAAAGAATGTAAGATTGGATCCATTAGTTTGGATGAAAATGATGATGATTATCCTGTGCCACGACCTGGAATGATCTTTAGGTCAGAAGCTGAGGCAAGATTGTATTACACAAAATATGCCGACCAAATGGGCTTCAGCGTCAAGACTAGAACCTCAAAAAGGGGAGGTGAAGGCCAAGTTAAATATTTGATACTTGTATGTTCCGAGAGATCAAGAACTGGTATTGATGAATCAAAGAAACAGTATTGTACTGCTAGGATAAATTTGACTTTACGTAAAGATGGAACCTATCAAATTAGTGCAGTTACTCTCGGTCATAATCATGAATTGGGTTCTCAGAGAATTACTATTGAGATGAAGTGTATAAGGAAATTGGATCCAGAAGTTATTGACATGGGTGTTAAGAAGATATCAGAGCAAAATAATTGCGGAAATTACCTTCAGACAGAAAGACAGTGGATTAGAGAAAATGGAGATGGTGATGCTCTTCAGAAGTATTTGGTGAGGATGCAAGAACAAGATAGAAACTTCTTCTATGCAATTGACTTGGATGATTTGTTCAGCGCGAAGAATGTATTTTGGTCTGATGGAAGGAGTAGAGCTGCATATGAATCTTTTGGTGATGTGGTGACAGTTGATACGACATGCCTTTCCAATCACTACAAAGTGCCACTTGTAACTTTCATTGGAGTTAACCATCATGGGCAATCTGTACTGTTTGGTTGTGGGTTGTTATCATCTGACGACTCAGAGTCATTTGCTTGGTTGTTCGAATCATTGTTGCATTGCATGTCTGGTGTACCCCCACAAGGAATCGTAACAGATCATTGCTGCAGGGCCATGCAGAAAGCAGTTGAAACTGTATACCCCTCCATTCGACATCGATGGTGTTTGTCAAATATAATGGAAAAGCTTCCCCAACTAATCCATGAGTATGCTAATTGCAAGTCCTTAAGAGATCGTATGCATAATGTTGTCTATGAGACACCAACAACAGATGAATTTGAGGGAAAATGGAAGAAGATTTTGGAGGATTTTGACCTCAAAGACAATAAATGGTTGAAGGAATTGTTCCTTGACCGACATCGCTGGGCTCCTTCCTTTGTAAGAGGTGGTTTTTGGGCTGGAATGTATACTAATCCGCAAAGTGAAAGTAGGCATGAAATTTTTGATGGATTTATAAACCAACAAACAACTTTGAAGCAATTTGTTGATCAGTACAATAATGCCTTGCAGTATAAGGCTGAGAAGGAGTATATAGCTGACATACATTCATCCAGTAATAGTCAGACTTGTGTTACCAAATCTCCAATTGAGAGGCAGTTTCAATCTGCTTACACTCATGCAAAGTTTCTGGAGGTTCAACGTGAATTTGTTGGAAAGGCTGATTGTAACGTTTTTGTTGCTTGTGAAGATGGTTCTATTTGTCGCTACAATGTGATAGAGGATATGATAACAGAGGATAAGCCTAAGGAATCCGTGGTTGAAGTCATATATAACAGGGAAGATTGTGATATAAAATGCAACTGTGGCTTGTTTGAGTTTAGAGGTATACTTTGTAGGCACTCGCTTGCAGTACTATCACAAGAGAGAGTGAAGGAGGTCCCGTGTAAATATATTTTAGACAGATGGAAAAAAAATATTGTGAGGAAGCATGTTTGTATAAAAACCAGCTATGGTGTTGTGCATTTTGAACCTCAAGTGCAGAGGTTTGATCTGTTATGCAAACAATTCAATAGTATTGCTGCTGCTGCTGCTGAATTTGAGGGTACAAGTTCTTTTGTAAAGGATACCCTATGTAACTTGAAGGAGAAACTTGACTCATGGACATCGTTACCGATAAACTCTTCTCTTGTGGATGTAGAGAAACACAACAATATGATACATTGA